; position-analysis -v 1 -i $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/data/sequences/peak-motifs_test_maxlen1000_purged_ml30_mis0.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title CEBPa_ChIP-seq_in_dog_liver -origin center -o $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab ; Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. ; Sequence file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/data/sequences/peak-motifs_test_maxlen1000_purged_ml30_mis0.fasta ; Sequence format fasta ; Sequence type dna ; Output file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab ; Oligo length 1 ; Occurrences counted on a single strands ; Background model estimation: homogeneous repartition ; Sequence statistics: ; Nb of sequences 43038 ; Sum of sequence lengths 11000544 ; Min sequence length 0 ; Max sequence length 1000 ; Average sequence length 255 ; Possible positions 11000544 ; Oligonucleotide statistics: ; Total occurrences 10900701 ; Position interval parameters: ; Position interval 20 ; Number of windows 50 ; Total positions 11000544 ; Degrees of freedom 49 ; K-mer clustering parameters: ; Number of clusters 0 ; Clustering method complete ; Position intervals: ; window [min,max] mid seq occ ; 1 -25 [-499,-480] -489.5 9 172 ; 2 -24 [-479,-460] -469.5 19 290 ; 3 -23 [-459,-440] -449.5 27 443 ; 4 -22 [-439,-420] -429.5 34 628 ; 5 -21 [-419,-400] -409.5 50 809 ; 6 -20 [-399,-380] -389.5 72 1179 ; 7 -19 [-379,-360] -369.5 99 1665 ; 8 -18 [-359,-340] -349.5 165 2570 ; 9 -17 [-339,-320] -329.5 250 4114 ; 10 -16 [-319,-300] -309.5 384 6376 ; 11 -15 [-299,-280] -289.5 600 9834 ; 12 -14 [-279,-260] -269.5 900 15223 ; 13 -13 [-259,-240] -249.5 1368 22642 ; 14 -12 [-239,-220] -229.5 2178 35241 ; 15 -11 [-219,-200] -209.5 3965 60334 ; 16 -10 [-199,-180] -189.5 7263 112011 ; 17 -9 [-179,-160] -169.5 11516 189579 ; 18 -8 [-159,-140] -149.5 16242 281091 ; 19 -7 [-139,-120] -129.5 21130 376271 ; 20 -6 [-119,-100] -109.5 26913 483072 ; 21 -5 [-99,-80] -89.5 34107 615699 ; 22 -4 [-79,-60] -69.5 40202 752309 ; 23 -3 [-59,-40] -49.5 42438 833872 ; 24 -2 [-39,-20] -29.5 43038 855666 ; 25 -1 [-19,0] -9.5 43038 860760 ; 26 0 [1,20] 10.5 43038 860760 ; 27 1 [21,40] 30.5 43038 855062 ; 28 2 [41,60] 50.5 42404 831688 ; 29 3 [61,80] 70.5 39969 746280 ; 30 4 [81,100] 90.5 33732 608520 ; 31 5 [101,120] 110.5 26597 477250 ; 32 6 [121,140] 130.5 20889 371328 ; 33 7 [141,160] 150.5 15975 276363 ; 34 8 [161,180] 170.5 11305 185327 ; 35 9 [181,200] 190.5 7051 108654 ; 36 10 [201,220] 210.5 3830 58532 ; 37 11 [221,240] 230.5 2129 34386 ; 38 12 [241,260] 250.5 1337 22136 ; 39 13 [261,280] 270.5 885 14922 ; 40 14 [281,300] 290.5 590 9607 ; 41 15 [301,320] 310.5 369 6237 ; 42 16 [321,340] 330.5 246 4040 ; 43 17 [341,360] 350.5 162 2506 ; 44 18 [361,380] 370.5 97 1640 ; 45 19 [381,400] 390.5 68 1155 ; 46 20 [401,420] 410.5 50 795 ; 47 21 [421,440] 430.5 34 622 ; 48 22 [441,460] 450.5 26 435 ; 49 23 [461,480] 470.5 18 279 ; 50 24 [481,500] 490.5 9 170 ; ; Column headers ; 1 seq pattern sequence ; 2 id pattern identifier ; 3 occ pattern occurrences ; 4 chi2 observed chi-square ; 5 df degrees of freedom ; 6 Pval P-value (probability for one word to be a false positive) ; 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) ; 8 sig Significance (sig = -log10(Eval)) ; 9 rank rank of the pattern according to sorting criterion ; 10 -489.5 occurrences in window 1 [-499,-480] ; 11 -469.5 occurrences in window 2 [-479,-460] ; 12 -449.5 occurrences in window 3 [-459,-440] ; 13 -429.5 occurrences in window 4 [-439,-420] ; 14 -409.5 occurrences in window 5 [-419,-400] ; 15 -389.5 occurrences in window 6 [-399,-380] ; 16 -369.5 occurrences in window 7 [-379,-360] ; 17 -349.5 occurrences in window 8 [-359,-340] ; 18 -329.5 occurrences in window 9 [-339,-320] ; 19 -309.5 occurrences in window 10 [-319,-300] ; 20 -289.5 occurrences in window 11 [-299,-280] ; 21 -269.5 occurrences in window 12 [-279,-260] ; 22 -249.5 occurrences in window 13 [-259,-240] ; 23 -229.5 occurrences in window 14 [-239,-220] ; 24 -209.5 occurrences in window 15 [-219,-200] ; 25 -189.5 occurrences in window 16 [-199,-180] ; 26 -169.5 occurrences in window 17 [-179,-160] ; 27 -149.5 occurrences in window 18 [-159,-140] ; 28 -129.5 occurrences in window 19 [-139,-120] ; 29 -109.5 occurrences in window 20 [-119,-100] ; 30 -89.5 occurrences in window 21 [-99,-80] ; 31 -69.5 occurrences in window 22 [-79,-60] ; 32 -49.5 occurrences in window 23 [-59,-40] ; 33 -29.5 occurrences in window 24 [-39,-20] ; 34 -9.5 occurrences in window 25 [-19,0] ; 35 10.5 occurrences in window 26 [1,20] ; 36 30.5 occurrences in window 27 [21,40] ; 37 50.5 occurrences in window 28 [41,60] ; 38 70.5 occurrences in window 29 [61,80] ; 39 90.5 occurrences in window 30 [81,100] ; 40 110.5 occurrences in window 31 [101,120] ; 41 130.5 occurrences in window 32 [121,140] ; 42 150.5 occurrences in window 33 [141,160] ; 43 170.5 occurrences in window 34 [161,180] ; 44 190.5 occurrences in window 35 [181,200] ; 45 210.5 occurrences in window 36 [201,220] ; 46 230.5 occurrences in window 37 [221,240] ; 47 250.5 occurrences in window 38 [241,260] ; 48 270.5 occurrences in window 39 [261,280] ; 49 290.5 occurrences in window 40 [281,300] ; 50 310.5 occurrences in window 41 [301,320] ; 51 330.5 occurrences in window 42 [321,340] ; 52 350.5 occurrences in window 43 [341,360] ; 53 370.5 occurrences in window 44 [361,380] ; 54 390.5 occurrences in window 45 [381,400] ; 55 410.5 occurrences in window 46 [401,420] ; 56 430.5 occurrences in window 47 [421,440] ; 57 450.5 occurrences in window 48 [441,460] ; 58 470.5 occurrences in window 49 [461,480] ; 59 490.5 occurrences in window 50 [481,500] #seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5 a a 3130284 467.1 49 0.0e+00 0 300 1 50 67 105 176 212 339 495 786 1204 1858 2850 4408 6488 10247 17793 32739 55437 82160 108764 138953 175712 214092 235852 239942 239837 242636 242211 237675 212028 173175 135804 106548 79002 53800 31415 16917 9821 6457 4296 2771 1768 1206 705 483 344 240 185 122 68 41 t t 3138151 358.5 49 1.2e-48 4.7e-48 47.33 2 47 96 134 196 237 333 488 704 1159 1806 2794 4459 6545 10107 17371 32518 54469 80545 107631 138402 176299 215160 238006 242838 242495 240384 241001 237089 213517 174834 138292 106999 79953 53871 31690 17139 10015 6409 4184 2795 1818 1183 735 473 335 205 178 102 71 40 c c 2316762 218.8 49 2.6e-23 1e-22 21.99 3 36 44 112 114 172 230 317 521 846 1376 2090 3158 4765 7376 12322 23344 39758 58949 78800 101052 129835 158493 176958 181077 182105 181243 182278 176325 158114 128137 99848 77003 57369 37800 22345 12080 6948 4529 3205 1951 1314 826 563 337 230 158 123 88 54 44 g g 2315504 188.1 49 3.5e-18 1.4e-17 16.85 4 39 65 72 122 168 257 355 535 853 1273 2020 3120 4712 7203 12472 22830 38870 57864 78758 101441 129770 159700 177310 181314 180724 181139 180689 175451 157864 128467 100124 77897 57860 38709 22643 12064 7398 4655 3110 1964 1272 801 484 327 226 172 127 107 66 41 ; Host name rsat ; Job started 2014-09-03.094538 ; Job done 2014-09-03.094756 ; Seconds 138.05 ; user 138.05 ; system 0.06 ; cuser 0 ; csystem 0