; One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m2_shift2 ; 3 matrices ; sort_field=rank_mean ; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=12; shift=2; ncol=15; --wwATTTTTAAaw- ; Alignment reference a 0 0 733 697 2692 0 0 0 0 0 2692 2691 1303 989 0 c 0 0 574 667 0 0 0 0 0 0 0 1 332 343 0 g 0 0 419 398 0 0 0 0 0 0 0 0 578 427 0 t 0 0 966 930 0 2692 2692 2692 2692 2692 0 0 479 933 0 // ; oligos_7nt_mkv5_m2 versus MA0151.1_rc (ARID3A_rc); m=1/2; ncol2=6; w=6; offset=5; strand=R; shift=7; score= 1.2857; -------TTTrAT-- ; cor=0.820; Ncor=0.410; logoDP=6.330; NIcor=0.335; NsEucl=0.864; SSD=1.339; NSW=0.888; rcor=1; rNcor=2; rlogoDP=1; rNIcor=1; rNsEucl=2; rSSD=1; rNSW=1; rank_mean=1.286; match_rank=1 a 0 0 0 0 0 0 0 6 0 0 17 27 0 0 0 c 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 t 0 0 0 0 0 0 0 20 27 27 1 0 27 0 0 // ; oligos_7nt_mkv5_m2 versus MA0497.1_rc (MEF2C_rc); m=2/2; ncol2=15; w=12; offset=-2; strand=R; shift=0; score= 1.7143; wkCTATTTTTrgmhy ; cor=0.751; Ncor=0.601; logoDP=2.167; NIcor=-0.067; NsEucl=0.901; SSD=2.826; NSW=0.882; rcor=2; rNcor=1; rlogoDP=2; rNIcor=2; rNsEucl=1; rSSD=2; rNSW=2; rank_mean=1.714; match_rank=2 a 624 250 29 0 2091 70 76 15 230 263 1224 337 760 752 507 c 126 148 1671 32 0 4 2 87 241 74 0 78 822 573 676 g 450 836 120 0 62 0 0 0 32 256 985 1412 196 151 321 t 1009 975 389 2177 56 2135 2131 2107 1706 1616 0 382 431 733 705 // ;