; One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m3_shift2 ; 7 matrices ; sort_field=rank_mean ; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=13; shift=2; ncol=15; --wrTTACACAAtww ; Alignment reference a 0 0 858 1227 211 1 2938 0 2923 0 2923 2926 729 1021 848 c 0 0 454 523 61 1 0 2937 0 2935 0 3 720 718 708 g 0 0 669 744 112 0 0 0 15 0 13 3 388 442 590 t 0 0 957 444 2554 2936 0 1 0 3 2 6 1101 757 792 // ; oligos_7nt_mkv5_m3 versus oligos_8nt_mkv6_m4; m=1/6; ncol2=13; w=13; offset=0; strand=D; shift=2; score= 3.1429; --wrTTACACAATah ; cor=0.975; Ncor=0.975; logoDP=12.686; NIcor=0.970; NsEucl=0.970; SSD=0.297; NSW=0.989; rcor=1; rNcor=1; rlogoDP=16; rNIcor=1; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=3.143; match_rank=1 a 0 0 714 1247 9 3 2479 2 1960 1 2463 2478 125 915 663 c 0 0 367 375 3 0 0 2486 7 2449 4 2 391 571 645 g 0 0 555 662 8 10 10 2 516 0 21 8 175 399 404 t 0 0 862 214 2478 2485 9 8 15 48 10 10 1807 613 786 // ; oligos_7nt_mkv5_m3 versus oligos_8nt_mkv6_m2_rc; m=2/6; ncol2=14; w=13; offset=-1; strand=R; shift=1; score=48.4286; -wtATTTCACAATmw ; cor=0.838; Ncor=0.778; logoDP=6.442; NIcor=0.356; NsEucl=0.924; SSD=1.949; NSW=0.925; rcor=43; rNcor=33; rlogoDP=77; rNIcor=76; rNsEucl=39; rSSD=33; rNSW=38; rank_mean=48.429; match_rank=45 a 0 1180 774 3381 10 29 429 24 3685 19 3988 4014 171 1562 1090 c 0 788 674 248 7 6 11 4011 36 3952 33 8 571 1040 993 g 0 878 985 335 7 61 360 2 263 15 10 11 241 557 660 t 0 1211 1624 93 4033 3961 3257 20 73 71 26 24 3074 898 1314 // ; oligos_7nt_mkv5_m3 versus positions_7nt_m1; m=3/6; ncol2=15; w=13; offset=-1; strand=D; shift=1; score=61.8571; -wtATTTCACAATCw ; cor=0.792; Ncor=0.686; logoDP=10.613; NIcor=0.663; NsEucl=0.911; SSD=2.688; NSW=0.897; rcor=65; rNcor=73; rlogoDP=52; rNIcor=42; rNsEucl=74; rSSD=61; rNSW=66; rank_mean=61.857; match_rank=68 a 0 394 220 1355 8 10 132 6 1292 18 1376 1397 18 238 485 c 0 279 243 17 9 7 9 1403 26 1344 34 4 64 1058 302 g 0 318 341 33 4 46 167 3 48 6 1 7 13 45 157 t 0 423 610 9 1393 1351 1106 2 48 46 3 6 1319 73 470 // ; oligos_7nt_mkv5_m3 versus positions_6nt_m2; m=4/6; ncol2=15; w=13; offset=-1; strand=D; shift=1; score= 76; -dkATTACGCAAGAr ; cor=0.760; Ncor=0.658; logoDP=9.920; NIcor=0.634; NsEucl=0.906; SSD=3.005; NSW=0.884; rcor=93; rNcor=83; rlogoDP=65; rNIcor=49; rNsEucl=85; rSSD=76; rNSW=81; rank_mean=76.000; match_rank=88 a 0 203 157 612 2 1 589 32 68 11 677 677 9 629 179 c 0 108 117 23 2 2 3 539 20 645 1 0 57 15 148 g 0 175 199 33 1 11 48 27 575 2 0 1 540 14 185 t 0 192 205 10 673 664 38 80 15 20 0 0 72 20 166 // ; oligos_7nt_mkv5_m3 versus oligos_8nt_mkv6_m1; m=5/6; ncol2=15; w=13; offset=-2; strand=D; shift=0; score= 78; atGGTTGCACAACwh ; cor=0.753; Ncor=0.653; logoDP=11.132; NIcor=0.645; NsEucl=0.903; SSD=3.193; NSW=0.877; rcor=99; rNcor=85; rlogoDP=42; rNIcor=47; rNsEucl=90; rSSD=91; rNSW=92; rank_mean=78.000; match_rank=93 a 991 446 177 354 1 2 76 3 2057 59 2210 2207 18 1073 570 c 349 252 30 55 10 0 3 2211 43 2086 12 4 1847 418 624 g 470 340 1759 1769 1 4 2107 4 72 10 1 6 50 136 460 t 414 1186 258 46 2212 2218 38 6 52 69 1 7 309 597 570 // ; oligos_7nt_mkv5_m3 versus positions_6nt_m1_rc; m=6/6; ncol2=15; w=13; offset=0; strand=R; shift=2; score=81.8571; --kaTTTCACAATCT ; cor=0.777; Ncor=0.674; logoDP=1.964; NIcor=-0.062; NsEucl=0.908; SSD=2.890; NSW=0.889; rcor=77; rNcor=78; rlogoDP=93; rNIcor=93; rNsEucl=83; rSSD=71; rNSW=78; rank_mean=81.857; match_rank=95 a 0 0 184 544 4 10 88 4 824 6 870 884 5 135 75 c 0 0 102 111 6 5 6 889 7 852 17 3 17 694 31 g 0 0 243 184 1 31 82 1 40 2 2 5 8 25 20 t 0 0 368 58 886 851 721 3 26 37 8 5 867 43 771 // ; ; One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m5_shift1 ; 16 matrices ; sort_field=rank_mean ; oligos_6nt_mkv4_m5; m=0 (reference); ncol1=15; shift=1; ncol=18; -atGATTGCACAACwy-- ; Alignment reference a 0 1049 667 145 2154 1 1 73 7 2557 96 2699 2698 42 1156 679 0 0 c 0 475 241 158 56 4 1 6 2710 51 2532 26 10 2218 617 807 0 0 g 0 582 485 2173 474 4 10 2440 2 31 16 2 11 95 167 542 0 0 t 0 622 1335 252 44 2719 2716 209 9 89 84 1 9 373 788 700 0 0 // ; oligos_6nt_mkv4_m5 versus oligos_8nt_mkv6_m1; m=1/15; ncol2=15; w=15; offset=0; strand=D; shift=1; score= 6.5714; -atGGTTGCACAACwh-- ; cor=0.942; Ncor=0.942; logoDP=12.766; NIcor=0.931; NsEucl=0.958; SSD=0.812; NSW=0.973; rcor=8; rNcor=2; rlogoDP=14; rNIcor=2; rNsEucl=6; rSSD=7; rNSW=7; rank_mean=6.571; match_rank=2 a 0 991 446 177 354 1 2 76 3 2057 59 2210 2207 18 1073 570 0 0 c 0 349 252 30 55 10 0 3 2211 43 2086 12 4 1847 418 624 0 0 g 0 470 340 1759 1769 1 4 2107 4 72 10 1 6 50 136 460 0 0 t 0 414 1186 258 46 2212 2218 38 6 52 69 1 7 309 597 570 0 0 // ; oligos_6nt_mkv4_m5 versus positions_7nt_m2; m=2/15; ncol2=17; w=15; offset=-1; strand=D; shift=0; score=10.1429; rmAGATTGCACAACTyt- ; cor=0.941; Ncor=0.830; logoDP=13.395; NIcor=0.823; NsEucl=0.954; SSD=0.936; NSW=0.969; rcor=9; rNcor=19; rlogoDP=7; rNIcor=9; rNsEucl=8; rSSD=10; rNSW=9; rank_mean=10.143; match_rank=5 a 94 132 262 16 316 0 0 10 2 313 7 332 335 6 35 67 74 0 c 72 86 4 10 5 0 0 0 332 11 320 3 0 297 15 106 77 0 g 95 78 9 279 13 1 2 311 1 1 1 1 0 7 2 77 54 0 t 75 40 61 31 2 335 334 15 1 11 8 0 1 26 284 86 131 0 // ; oligos_6nt_mkv4_m5 versus positions_8nt_m5; m=3/15; ncol2=17; w=15; offset=-1; strand=D; shift=0; score= 26; raTGGTTGCACAAyAwt- ; cor=0.872; Ncor=0.769; logoDP=13.665; NIcor=0.741; NsEucl=0.933; SSD=2.050; NSW=0.932; rcor=26; rNcor=34; rlogoDP=4; rNIcor=21; rNsEucl=28; rSSD=37; rNSW=32; rank_mean=26.000; match_rank=18 a 176 350 18 19 56 1 1 11 1 634 4 645 644 6 547 174 92 0 c 61 82 6 1 8 0 0 2 642 3 634 1 0 239 29 148 111 0 g 351 112 19 612 576 0 0 627 0 4 1 0 0 12 34 147 48 0 t 58 102 603 14 6 645 645 6 3 5 7 0 2 389 36 177 395 0 // ; oligos_6nt_mkv4_m5 versus positions_8nt_m1; m=4/15; ncol2=16; w=15; offset=-1; strand=D; shift=0; score=26.5714; amAGATTGCAAAACww-- ; cor=0.864; Ncor=0.810; logoDP=11.723; NIcor=0.798; NsEucl=0.934; SSD=1.947; NSW=0.935; rcor=29; rNcor=26; rlogoDP=32; rNIcor=15; rNsEucl=24; rSSD=32; rNSW=28; rank_mean=26.571; match_rank=19 a 173 182 485 53 502 2 2 12 3 522 456 527 540 8 217 164 0 0 c 113 162 5 27 15 3 0 2 544 6 70 25 3 483 124 121 0 0 g 134 133 23 442 22 2 2 523 5 15 2 2 7 23 44 128 0 0 t 134 77 41 32 15 547 550 17 2 11 26 0 4 40 169 141 0 0 // ; oligos_6nt_mkv4_m5 versus oligos_7nt_mkv5_m1; m=5/15; ncol2=15; w=14; offset=1; strand=D; shift=2; score=29.5714; --wkATTGCACAATcwy- ; cor=0.863; Ncor=0.755; logoDP=12.131; NIcor=0.746; NsEucl=0.931; SSD=1.875; NSW=0.933; rcor=30; rNcor=43; rlogoDP=21; rNIcor=19; rNsEucl=32; rSSD=31; rNSW=31; rank_mean=29.571; match_rank=23 a 0 0 881 596 2604 4 6 132 4 2769 41 2931 2943 37 506 1027 722 0 c 0 0 545 555 127 12 0 10 2960 44 2728 35 5 195 1897 703 784 0 g 0 0 620 810 181 8 12 2652 3 37 10 2 12 67 243 299 499 0 t 0 0 926 1011 60 2948 2954 178 5 122 193 4 12 2673 326 943 967 0 // ; oligos_6nt_mkv4_m5 versus positions_8nt_m2_rc; m=6/15; ncol2=14; w=14; offset=1; strand=R; shift=2; score=37.4286; --wkATTGCTCAACak-- ; cor=0.873; Ncor=0.815; logoDP=9.544; NIcor=0.494; NsEucl=0.934; SSD=1.721; NSW=0.939; rcor=24; rNcor=23; rlogoDP=69; rNIcor=72; rNsEucl=25; rSSD=25; rNSW=24; rank_mean=37.429; match_rank=30 a 0 0 167 123 575 0 1 13 3 55 5 600 603 0 211 146 0 0 c 0 0 140 130 5 3 2 0 607 14 591 4 3 600 141 149 0 0 g 0 0 134 195 23 1 2 584 0 95 0 1 2 1 107 154 0 0 t 0 0 169 162 7 606 605 13 0 446 14 5 2 9 151 161 0 0 // ; oligos_6nt_mkv4_m5 versus positions_8nt_m4; m=7/15; ncol2=14; w=14; offset=1; strand=D; shift=2; score=51.5714; --wtATTGCCCAATaw-- ; cor=0.787; Ncor=0.734; logoDP=11.851; NIcor=0.736; NsEucl=0.915; SSD=2.826; NSW=0.899; rcor=69; rNcor=52; rlogoDP=28; rNIcor=24; rNsEucl=63; rSSD=65; rNSW=60; rank_mean=51.571; match_rank=49 a 0 0 336 249 850 1 1 12 2 35 5 1120 1128 51 410 290 0 0 c 0 0 230 213 94 0 1 0 1126 936 1106 4 0 179 261 274 0 0 g 0 0 245 259 141 0 1 1114 0 148 5 3 0 78 192 202 0 0 t 0 0 317 407 43 1127 1125 2 0 9 12 1 0 820 265 362 0 0 // ; oligos_6nt_mkv4_m5 versus oligos_8nt_mkv6_m3_rc; m=8/15; ncol2=14; w=14; offset=1; strand=R; shift=2; score=55.7143; --wtATTGCTCAATaw-- ; cor=0.801; Ncor=0.748; logoDP=9.449; NIcor=0.598; NsEucl=0.918; SSD=2.608; NSW=0.907; rcor=55; rNcor=46; rlogoDP=70; rNIcor=60; rNsEucl=48; rSSD=56; rNSW=55; rank_mean=55.714; match_rank=54 a 0 0 955 729 2706 8 8 106 14 646 97 3266 3277 83 1468 918 0 0 c 0 0 674 531 215 4 4 5 3279 85 3025 17 10 330 667 771 0 0 g 0 0 732 644 294 9 9 3122 9 210 8 5 5 181 504 570 0 0 t 0 0 945 1402 91 3285 3285 73 4 2365 176 18 14 2712 667 1047 0 0 // ; oligos_6nt_mkv4_m5 versus oligos_8nt_mkv6_m2_rc; m=9/15; ncol2=14; w=14; offset=1; strand=R; shift=2; score=56.5714; --wtATTTCACAATmw-- ; cor=0.806; Ncor=0.753; logoDP=8.479; NIcor=0.475; NsEucl=0.919; SSD=2.546; NSW=0.909; rcor=54; rNcor=45; rlogoDP=73; rNIcor=73; rNsEucl=46; rSSD=52; rNSW=53; rank_mean=56.571; match_rank=56 a 0 0 1180 774 3381 10 29 429 24 3685 19 3988 4014 171 1562 1090 0 0 c 0 0 788 674 248 7 6 11 4011 36 3952 33 8 571 1040 993 0 0 g 0 0 878 985 335 7 61 360 2 263 15 10 11 241 557 660 0 0 t 0 0 1211 1624 93 4033 3961 3257 20 73 71 26 24 3074 898 1314 0 0 // ; oligos_6nt_mkv4_m5 versus oligos_7nt_mkv5_m3; m=10/15; ncol2=13; w=13; offset=2; strand=D; shift=3; score=67.5714; ---wrTTACACAAtww-- ; cor=0.774; Ncor=0.671; logoDP=11.055; NIcor=0.669; NsEucl=0.908; SSD=2.883; NSW=0.889; rcor=79; rNcor=79; rlogoDP=46; rNIcor=40; rNsEucl=82; rSSD=70; rNSW=77; rank_mean=67.571; match_rank=75 a 0 0 0 858 1227 211 1 2938 0 2923 0 2923 2926 729 1021 848 0 0 c 0 0 0 454 523 61 1 0 2937 0 2935 0 3 720 718 708 0 0 g 0 0 0 669 744 112 0 0 0 15 0 13 3 388 442 590 0 0 t 0 0 0 957 444 2554 2936 0 1 0 3 2 6 1101 757 792 0 0 // ; oligos_6nt_mkv4_m5 versus oligos_7nt_mkv5_m5; m=11/15; ncol2=12; w=12; offset=2; strand=D; shift=3; score=71.1429; ---wrTTGCTCAAya--- ; cor=0.779; Ncor=0.623; logoDP=11.901; NIcor=0.613; NsEucl=0.900; SSD=2.866; NSW=0.881; rcor=75; rNcor=91; rlogoDP=25; rNIcor=56; rNsEucl=95; rSSD=68; rNSW=88; rank_mean=71.143; match_rank=79 a 0 0 0 798 1165 0 0 0 0 5 0 2811 2811 291 989 0 0 0 c 0 0 0 484 563 0 1 0 2811 0 2811 0 0 857 675 0 0 0 g 0 0 0 602 755 0 0 2811 0 6 0 0 0 492 465 0 0 0 t 0 0 0 927 328 2811 2810 0 0 2800 0 0 0 1171 682 0 0 0 // ; oligos_6nt_mkv4_m5 versus positions_6nt_m4; m=12/15; ncol2=18; w=15; offset=-1; strand=D; shift=0; score=73.4286; wvATGTTGCACAACAGtr ; cor=0.762; Ncor=0.635; logoDP=12.826; NIcor=0.628; NsEucl=0.908; SSD=3.810; NSW=0.873; rcor=89; rNcor=89; rlogoDP=13; rNIcor=51; rNsEucl=79; rSSD=98; rNSW=95; rank_mean=73.429; match_rank=83 a 39 30 88 5 6 0 1 4 2 116 3 119 118 2 107 5 21 32 c 22 32 17 2 4 0 0 0 115 0 111 0 0 111 2 8 26 29 g 28 31 7 0 107 0 0 111 1 0 1 0 0 3 2 100 25 34 t 30 26 7 112 2 119 118 4 1 3 4 0 1 3 8 6 47 24 // ; oligos_6nt_mkv4_m5 versus positions_7nt_m1; m=13/15; ncol2=15; w=14; offset=1; strand=D; shift=2; score=73.5714; --wtATTTCACAATCwh- ; cor=0.760; Ncor=0.665; logoDP=11.244; NIcor=0.645; NsEucl=0.908; SSD=3.308; NSW=0.882; rcor=92; rNcor=81; rlogoDP=39; rNIcor=48; rNsEucl=78; rSSD=93; rNSW=84; rank_mean=73.571; match_rank=84 a 0 0 394 220 1355 8 10 132 6 1292 18 1376 1397 18 238 485 355 0 c 0 0 279 243 17 9 7 9 1403 26 1344 34 4 64 1058 302 372 0 g 0 0 318 341 33 4 46 167 3 48 6 1 7 13 45 157 229 0 t 0 0 423 610 9 1393 1351 1106 2 48 46 3 6 1319 73 470 458 0 // ; oligos_6nt_mkv4_m5 versus oligos_8nt_mkv6_m5; m=14/15; ncol2=12; w=12; offset=2; strand=D; shift=3; score=74.2857; ---wmTTGCCCAAya--- ; cor=0.773; Ncor=0.618; logoDP=11.811; NIcor=0.617; NsEucl=0.899; SSD=2.925; NSW=0.878; rcor=81; rNcor=93; rlogoDP=31; rNIcor=55; rNsEucl=96; rSSD=73; rNSW=91; rank_mean=74.286; match_rank=85 a 0 0 0 526 686 0 0 0 0 5 0 1906 1908 237 612 0 0 0 c 0 0 0 413 478 0 0 0 1909 1852 1908 0 1 578 399 0 0 0 g 0 0 0 403 462 0 0 1907 0 50 0 3 0 440 462 0 0 0 t 0 0 0 567 283 1909 1909 2 0 2 1 0 0 654 436 0 0 0 // ; oligos_6nt_mkv4_m5 versus oligos_8nt_mkv6_m4; m=15/15; ncol2=13; w=13; offset=2; strand=D; shift=3; score=77.7143; ---wrTTACACAATah-- ; cor=0.754; Ncor=0.653; logoDP=10.903; NIcor=0.647; NsEucl=0.903; SSD=3.166; NSW=0.878; rcor=98; rNcor=84; rlogoDP=48; rNIcor=46; rNsEucl=89; rSSD=89; rNSW=90; rank_mean=77.714; match_rank=92 a 0 0 0 714 1247 9 3 2479 2 1960 1 2463 2478 125 915 663 0 0 c 0 0 0 367 375 3 0 0 2486 7 2449 4 2 391 571 645 0 0 g 0 0 0 555 662 8 10 10 2 516 0 21 8 175 399 404 0 0 t 0 0 0 862 214 2478 2485 9 8 15 48 10 10 1807 613 786 0 0 // ; ; One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m5_shift1 ; 4 matrices ; sort_field=rank_mean ; oligos_8nt_mkv6_m5; m=0 (reference); ncol1=12; shift=1; ncol=16; -wmTTGCCCAAya--- ; Alignment reference a 0 526 686 0 0 0 0 5 0 1906 1908 237 612 0 0 0 c 0 413 478 0 0 0 1909 1852 1908 0 1 578 399 0 0 0 g 0 403 462 0 0 1907 0 50 0 3 0 440 462 0 0 0 t 0 567 283 1909 1909 2 0 2 1 0 0 654 436 0 0 0 // ; oligos_8nt_mkv6_m5 versus positions_8nt_m4; m=1/3; ncol2=14; w=12; offset=-1; strand=D; shift=0; score= 7.4286; wtATTGCCCAATaw-- ; cor=0.963; Ncor=0.826; logoDP=13.781; NIcor=0.820; NsEucl=0.960; SSD=0.458; NSW=0.981; rcor=4; rNcor=22; rlogoDP=3; rNIcor=11; rNsEucl=5; rSSD=3; rNSW=4; rank_mean=7.429; match_rank=3 a 336 249 850 1 1 12 2 35 5 1120 1128 51 410 290 0 0 c 230 213 94 0 1 0 1126 936 1106 4 0 179 261 274 0 0 g 245 259 141 0 1 1114 0 148 5 3 0 78 192 202 0 0 t 317 407 43 1127 1125 2 0 9 12 1 0 820 265 362 0 0 // ; oligos_8nt_mkv6_m5 versus positions_8nt_m2_rc; m=2/3; ncol2=14; w=12; offset=-1; strand=R; shift=0; score=66.5714; wkATTGCTCAACak-- ; cor=0.798; Ncor=0.684; logoDP=10.609; NIcor=0.540; NsEucl=0.905; SSD=2.582; NSW=0.892; rcor=57; rNcor=75; rlogoDP=53; rNIcor=68; rNsEucl=86; rSSD=54; rNSW=73; rank_mean=66.571; match_rank=72 a 167 123 575 0 1 13 3 55 5 600 603 0 211 146 0 0 c 140 130 5 3 2 0 607 14 591 4 3 600 141 149 0 0 g 134 195 23 1 2 584 0 95 0 1 2 1 107 154 0 0 t 169 162 7 606 605 13 0 446 14 5 2 9 151 161 0 0 // ; oligos_8nt_mkv6_m5 versus positions_8nt_m3_rc; m=3/3; ncol2=16; w=12; offset=-1; strand=R; shift=0; score=96.8571; htcTTGCACAATCAyw ; cor=0.757; Ncor=0.568; logoDP=0.236; NIcor=-0.195; NsEucl=0.895; SSD=3.164; NSW=0.868; rcor=94; rNcor=99; rlogoDP=100; rNIcor=97; rNsEucl=100; rSSD=88; rNSW=100; rank_mean=96.857; match_rank=100 a 163 132 141 2 0 26 4 611 19 636 639 13 23 566 157 174 c 167 107 416 4 0 3 642 7 600 10 1 24 586 25 180 141 g 149 133 72 0 5 594 1 12 4 1 4 13 20 14 133 144 t 169 276 19 642 643 25 1 18 25 1 4 598 19 43 178 189 // ; ; One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m1_shift1 ; 7 matrices ; sort_field=rank_mean ; oligos_8nt_mkv6_m1; m=0 (reference); ncol1=15; shift=1; ncol=18; -atGGTTGCACAACwh-- ; Alignment reference a 0 991 446 177 354 1 2 76 3 2057 59 2210 2207 18 1073 570 0 0 c 0 349 252 30 55 10 0 3 2211 43 2086 12 4 1847 418 624 0 0 g 0 470 340 1759 1769 1 4 2107 4 72 10 1 6 50 136 460 0 0 t 0 414 1186 258 46 2212 2218 38 6 52 69 1 7 309 597 570 0 0 // ; oligos_8nt_mkv6_m1 versus positions_8nt_m5; m=1/6; ncol2=17; w=15; offset=-1; strand=D; shift=0; score= 8.4286; raTGGTTGCACAAyAwt- ; cor=0.945; Ncor=0.834; logoDP=14.406; NIcor=0.816; NsEucl=0.955; SSD=0.916; NSW=0.969; rcor=7; rNcor=15; rlogoDP=1; rNIcor=12; rNsEucl=7; rSSD=9; rNSW=8; rank_mean=8.429; match_rank=4 a 176 350 18 19 56 1 1 11 1 634 4 645 644 6 547 174 92 0 c 61 82 6 1 8 0 0 2 642 3 634 1 0 239 29 148 111 0 g 351 112 19 612 576 0 0 627 0 4 1 0 0 12 34 147 48 0 t 58 102 603 14 6 645 645 6 3 5 7 0 2 389 36 177 395 0 // ; oligos_8nt_mkv6_m1 versus positions_7nt_m2; m=2/6; ncol2=17; w=15; offset=-1; strand=D; shift=0; score=31.4286; rmAGATTGCACAACTyt- ; cor=0.857; Ncor=0.756; logoDP=13.263; NIcor=0.740; NsEucl=0.930; SSD=2.204; NSW=0.927; rcor=35; rNcor=42; rlogoDP=9; rNIcor=22; rNsEucl=35; rSSD=41; rNSW=36; rank_mean=31.429; match_rank=26 a 94 132 262 16 316 0 0 10 2 313 7 332 335 6 35 67 74 0 c 72 86 4 10 5 0 0 0 332 11 320 3 0 297 15 106 77 0 g 95 78 9 279 13 1 2 311 1 1 1 1 0 7 2 77 54 0 t 75 40 61 31 2 335 334 15 1 11 8 0 1 26 284 86 131 0 // ; oligos_8nt_mkv6_m1 versus positions_6nt_m4; m=3/6; ncol2=18; w=15; offset=-1; strand=D; shift=0; score=43.7143; wvATGTTGCACAACAGtr ; cor=0.833; Ncor=0.694; logoDP=13.563; NIcor=0.693; NsEucl=0.922; SSD=2.719; NSW=0.909; rcor=44; rNcor=66; rlogoDP=5; rNIcor=34; rNsEucl=43; rSSD=62; rNSW=52; rank_mean=43.714; match_rank=37 a 39 30 88 5 6 0 1 4 2 116 3 119 118 2 107 5 21 32 c 22 32 17 2 4 0 0 0 115 0 111 0 0 111 2 8 26 29 g 28 31 7 0 107 0 0 111 1 0 1 0 0 3 2 100 25 34 t 30 26 7 112 2 119 118 4 1 3 4 0 1 3 8 6 47 24 // ; oligos_8nt_mkv6_m1 versus positions_8nt_m1; m=4/6; ncol2=16; w=15; offset=-1; strand=D; shift=0; score= 59; amAGATTGCAAAACww-- ; cor=0.780; Ncor=0.731; logoDP=11.607; NIcor=0.714; NsEucl=0.916; SSD=3.181; NSW=0.894; rcor=74; rNcor=53; rlogoDP=35; rNIcor=29; rNsEucl=61; rSSD=90; rNSW=71; rank_mean=59.000; match_rank=60 a 173 182 485 53 502 2 2 12 3 522 456 527 540 8 217 164 0 0 c 113 162 5 27 15 3 0 2 544 6 70 25 3 483 124 121 0 0 g 134 133 23 442 22 2 2 523 5 15 2 2 7 23 44 128 0 0 t 134 77 41 32 15 547 550 17 2 11 26 0 4 40 169 141 0 0 // ; oligos_8nt_mkv6_m1 versus positions_8nt_m2_rc; m=5/6; ncol2=14; w=14; offset=1; strand=R; shift=2; score=61.4286; --wkATTGCTCAACak-- ; cor=0.792; Ncor=0.739; logoDP=10.523; NIcor=0.584; NsEucl=0.914; SSD=2.868; NSW=0.898; rcor=64; rNcor=50; rlogoDP=54; rNIcor=63; rNsEucl=65; rSSD=69; rNSW=65; rank_mean=61.429; match_rank=66 a 0 0 167 123 575 0 1 13 3 55 5 600 603 0 211 146 0 0 c 0 0 140 130 5 3 2 0 607 14 591 4 3 600 141 149 0 0 g 0 0 134 195 23 1 2 584 0 95 0 1 2 1 107 154 0 0 t 0 0 169 162 7 606 605 13 0 446 14 5 2 9 151 161 0 0 // ; oligos_8nt_mkv6_m1 versus oligos_8nt_mkv6_m5; m=6/6; ncol2=12; w=12; offset=2; strand=D; shift=3; score=76.4286; ---wmTTGCCCAAya--- ; cor=0.765; Ncor=0.612; logoDP=12.229; NIcor=0.612; NsEucl=0.897; SSD=3.065; NSW=0.872; rcor=86; rNcor=96; rlogoDP=19; rNIcor=57; rNsEucl=98; rSSD=82; rNSW=97; rank_mean=76.429; match_rank=89 a 0 0 0 526 686 0 0 0 0 5 0 1906 1908 237 612 0 0 0 c 0 0 0 413 478 0 0 0 1909 1852 1908 0 1 578 399 0 0 0 g 0 0 0 403 462 0 0 1907 0 50 0 3 0 440 462 0 0 0 t 0 0 0 567 283 1909 1909 2 0 2 1 0 0 654 436 0 0 0 // ; ; One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m1_shift2 ; 16 matrices ; sort_field=rank_mean ; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=15; shift=2; ncol=17; --wkATTGCACAATcwy ; Alignment reference a 0 0 881 596 2604 4 6 132 4 2769 41 2931 2943 37 506 1027 722 c 0 0 545 555 127 12 0 10 2960 44 2728 35 5 195 1897 703 784 g 0 0 620 810 181 8 12 2652 3 37 10 2 12 67 243 299 499 t 0 0 926 1011 60 2948 2954 178 5 122 193 4 12 2673 326 943 967 // ; oligos_7nt_mkv5_m1 versus positions_7nt_m1; m=1/15; ncol2=15; w=15; offset=0; strand=D; shift=2; score=10.5714; --wtATTTCACAATCwh ; cor=0.915; Ncor=0.915; logoDP=12.174; NIcor=0.909; NsEucl=0.949; SSD=1.172; NSW=0.961; rcor=12; rNcor=4; rlogoDP=20; rNIcor=3; rNsEucl=11; rSSD=12; rNSW=12; rank_mean=10.571; match_rank=6 a 0 0 394 220 1355 8 10 132 6 1292 18 1376 1397 18 238 485 355 c 0 0 279 243 17 9 7 9 1403 26 1344 34 4 64 1058 302 372 g 0 0 318 341 33 4 46 167 3 48 6 1 7 13 45 157 229 t 0 0 423 610 9 1393 1351 1106 2 48 46 3 6 1319 73 470 458 // ; oligos_7nt_mkv5_m1 versus oligos_8nt_mkv6_m3_rc; m=2/15; ncol2=14; w=14; offset=0; strand=R; shift=2; score=25.4286; --wtATTGCTCAATaw- ; cor=0.899; Ncor=0.839; logoDP=9.852; NIcor=0.697; NsEucl=0.942; SSD=1.322; NSW=0.953; rcor=17; rNcor=12; rlogoDP=67; rNIcor=33; rNsEucl=16; rSSD=17; rNSW=16; rank_mean=25.429; match_rank=16 a 0 0 955 729 2706 8 8 106 14 646 97 3266 3277 83 1468 918 0 c 0 0 674 531 215 4 4 5 3279 85 3025 17 10 330 667 771 0 g 0 0 732 644 294 9 9 3122 9 210 8 5 5 181 504 570 0 t 0 0 945 1402 91 3285 3285 73 4 2365 176 18 14 2712 667 1047 0 // ; oligos_7nt_mkv5_m1 versus positions_8nt_m4; m=3/15; ncol2=14; w=14; offset=0; strand=D; shift=2; score=25.8571; --wtATTGCCCAATaw- ; cor=0.862; Ncor=0.804; logoDP=12.067; NIcor=0.814; NsEucl=0.932; SSD=1.819; NSW=0.935; rcor=31; rNcor=28; rlogoDP=22; rNIcor=13; rNsEucl=29; rSSD=29; rNSW=29; rank_mean=25.857; match_rank=17 a 0 0 336 249 850 1 1 12 2 35 5 1120 1128 51 410 290 0 c 0 0 230 213 94 0 1 0 1126 936 1106 4 0 179 261 274 0 g 0 0 245 259 141 0 1 1114 0 148 5 3 0 78 192 202 0 t 0 0 317 407 43 1127 1125 2 0 9 12 1 0 820 265 362 0 // ; oligos_7nt_mkv5_m1 versus oligos_8nt_mkv6_m2_rc; m=4/15; ncol2=14; w=14; offset=0; strand=R; shift=2; score=33.2857; --wtATTTCACAATmw- ; cor=0.888; Ncor=0.829; logoDP=8.897; NIcor=0.579; NsEucl=0.939; SSD=1.465; NSW=0.948; rcor=19; rNcor=20; rlogoDP=72; rNIcor=64; rNsEucl=20; rSSD=19; rNSW=19; rank_mean=33.286; match_rank=27 a 0 0 1180 774 3381 10 29 429 24 3685 19 3988 4014 171 1562 1090 0 c 0 0 788 674 248 7 6 11 4011 36 3952 33 8 571 1040 993 0 g 0 0 878 985 335 7 61 360 2 263 15 10 11 241 557 660 0 t 0 0 1211 1624 93 4033 3961 3257 20 73 71 26 24 3074 898 1314 0 // ; oligos_7nt_mkv5_m1 versus positions_8nt_m3_rc; m=5/15; ncol2=16; w=15; offset=0; strand=R; shift=2; score= 38; --htcTTGCACAATCAy ; cor=0.909; Ncor=0.852; logoDP=0.529; NIcor=-0.238; NsEucl=0.946; SSD=1.312; NSW=0.956; rcor=15; rNcor=9; rlogoDP=97; rNIcor=100; rNsEucl=14; rSSD=16; rNSW=15; rank_mean=38.000; match_rank=32 a 0 0 163 132 141 2 0 26 4 611 19 636 639 13 23 566 157 c 0 0 167 107 416 4 0 3 642 7 600 10 1 24 586 25 180 g 0 0 149 133 72 0 5 594 1 12 4 1 4 13 20 14 133 t 0 0 169 276 19 642 643 25 1 18 25 1 4 598 19 43 178 // ; oligos_7nt_mkv5_m1 versus oligos_8nt_mkv6_m4; m=6/15; ncol2=13; w=13; offset=1; strand=D; shift=3; score=46.2857; ---wrTTACACAATah- ; cor=0.825; Ncor=0.715; logoDP=11.090; NIcor=0.711; NsEucl=0.918; SSD=2.253; NSW=0.913; rcor=48; rNcor=60; rlogoDP=45; rNIcor=30; rNsEucl=49; rSSD=45; rNSW=47; rank_mean=46.286; match_rank=42 a 0 0 0 714 1247 9 3 2479 2 1960 1 2463 2478 125 915 663 0 c 0 0 0 367 375 3 0 0 2486 7 2449 4 2 391 571 645 0 g 0 0 0 555 662 8 10 10 2 516 0 21 8 175 399 404 0 t 0 0 0 862 214 2478 2485 9 8 15 48 10 10 1807 613 786 0 // ; oligos_7nt_mkv5_m1 versus positions_6nt_m1_rc; m=7/15; ncol2=15; w=14; offset=1; strand=R; shift=3; score=47.7143; ---kaTTTCACAATCTw ; cor=0.872; Ncor=0.763; logoDP=0.629; NIcor=-0.212; NsEucl=0.933; SSD=1.763; NSW=0.937; rcor=25; rNcor=37; rlogoDP=96; rNIcor=99; rNsEucl=26; rSSD=26; rNSW=25; rank_mean=47.714; match_rank=44 a 0 0 0 184 544 4 10 88 4 824 6 870 884 5 135 75 249 c 0 0 0 102 111 6 5 6 889 7 852 17 3 17 694 31 214 g 0 0 0 243 184 1 31 82 1 40 2 2 5 8 25 20 176 t 0 0 0 368 58 886 851 721 3 26 37 8 5 867 43 771 258 // ; oligos_7nt_mkv5_m1 versus positions_7nt_m2; m=8/15; ncol2=17; w=15; offset=-2; strand=D; shift=0; score=51.5714; rmAGATTGCACAACTyt ; cor=0.799; Ncor=0.705; logoDP=12.700; NIcor=0.698; NsEucl=0.918; SSD=3.047; NSW=0.898; rcor=56; rNcor=65; rlogoDP=15; rNIcor=32; rNsEucl=52; rSSD=79; rNSW=62; rank_mean=51.571; match_rank=48 a 94 132 262 16 316 0 0 10 2 313 7 332 335 6 35 67 74 c 72 86 4 10 5 0 0 0 332 11 320 3 0 297 15 106 77 g 95 78 9 279 13 1 2 311 1 1 1 1 0 7 2 77 54 t 75 40 61 31 2 335 334 15 1 11 8 0 1 26 284 86 131 // ; oligos_7nt_mkv5_m1 versus oligos_7nt_mkv5_m3; m=9/15; ncol2=13; w=13; offset=1; strand=D; shift=3; score=59.2857; ---wrTTACACAAtww- ; cor=0.792; Ncor=0.687; logoDP=10.999; NIcor=0.676; NsEucl=0.911; SSD=2.650; NSW=0.898; rcor=63; rNcor=72; rlogoDP=47; rNIcor=37; rNsEucl=73; rSSD=60; rNSW=63; rank_mean=59.286; match_rank=61 a 0 0 0 858 1227 211 1 2938 0 2923 0 2923 2926 729 1021 848 0 c 0 0 0 454 523 61 1 0 2937 0 2935 0 3 720 718 708 0 g 0 0 0 669 744 112 0 0 0 15 0 13 3 388 442 590 0 t 0 0 0 957 444 2554 2936 0 1 0 3 2 6 1101 757 792 0 // ; oligos_7nt_mkv5_m1 versus oligos_8nt_mkv6_m1; m=10/15; ncol2=15; w=14; offset=-1; strand=D; shift=1; score=61.2857; -atGGTTGCACAACwh- ; cor=0.783; Ncor=0.685; logoDP=12.032; NIcor=0.668; NsEucl=0.912; SSD=3.006; NSW=0.893; rcor=71; rNcor=74; rlogoDP=23; rNIcor=41; rNsEucl=71; rSSD=77; rNSW=72; rank_mean=61.286; match_rank=65 a 0 991 446 177 354 1 2 76 3 2057 59 2210 2207 18 1073 570 0 c 0 349 252 30 55 10 0 3 2211 43 2086 12 4 1847 418 624 0 g 0 470 340 1759 1769 1 4 2107 4 72 10 1 6 50 136 460 0 t 0 414 1186 258 46 2212 2218 38 6 52 69 1 7 309 597 570 0 // ; oligos_7nt_mkv5_m1 versus oligos_7nt_mkv5_m5; m=11/15; ncol2=12; w=12; offset=1; strand=D; shift=3; score=63.8571; ---wrTTGCTCAAya-- ; cor=0.795; Ncor=0.636; logoDP=11.820; NIcor=0.622; NsEucl=0.904; SSD=2.645; NSW=0.890; rcor=59; rNcor=86; rlogoDP=30; rNIcor=52; rNsEucl=87; rSSD=58; rNSW=75; rank_mean=63.857; match_rank=70 a 0 0 0 798 1165 0 0 0 0 5 0 2811 2811 291 989 0 0 c 0 0 0 484 563 0 1 0 2811 0 2811 0 0 857 675 0 0 g 0 0 0 602 755 0 0 2811 0 6 0 0 0 492 465 0 0 t 0 0 0 927 328 2811 2810 0 0 2800 0 0 0 1171 682 0 0 // ; oligos_7nt_mkv5_m1 versus positions_8nt_m5; m=12/15; ncol2=17; w=15; offset=-2; strand=D; shift=0; score=68.1429; raTGGTTGCACAAyAwt ; cor=0.771; Ncor=0.680; logoDP=12.995; NIcor=0.656; NsEucl=0.911; SSD=3.604; NSW=0.880; rcor=82; rNcor=76; rlogoDP=11; rNIcor=45; rNsEucl=77; rSSD=97; rNSW=89; rank_mean=68.143; match_rank=76 a 176 350 18 19 56 1 1 11 1 634 4 645 644 6 547 174 92 c 61 82 6 1 8 0 0 2 642 3 634 1 0 239 29 148 111 g 351 112 19 612 576 0 0 627 0 4 1 0 0 12 34 147 48 t 58 102 603 14 6 645 645 6 3 5 7 0 2 389 36 177 395 // ; oligos_7nt_mkv5_m1 versus oligos_8nt_mkv6_m5; m=13/15; ncol2=12; w=12; offset=1; strand=D; shift=3; score=71.2857; ---wmTTGCCCAAya-- ; cor=0.778; Ncor=0.622; logoDP=11.700; NIcor=0.617; NsEucl=0.901; SSD=2.846; NSW=0.881; rcor=76; rNcor=92; rlogoDP=33; rNIcor=54; rNsEucl=93; rSSD=66; rNSW=85; rank_mean=71.286; match_rank=80 a 0 0 0 526 686 0 0 0 0 5 0 1906 1908 237 612 0 0 c 0 0 0 413 478 0 0 0 1909 1852 1908 0 1 578 399 0 0 g 0 0 0 403 462 0 0 1907 0 50 0 3 0 440 462 0 0 t 0 0 0 567 283 1909 1909 2 0 2 1 0 0 654 436 0 0 // ; oligos_7nt_mkv5_m1 versus positions_8nt_m2_rc; m=14/15; ncol2=14; w=14; offset=0; strand=R; shift=2; score=71.8571; --wkATTGCTCAACak- ; cor=0.769; Ncor=0.718; logoDP=10.111; NIcor=0.602; NsEucl=0.911; SSD=3.122; NSW=0.888; rcor=83; rNcor=59; rlogoDP=63; rNIcor=59; rNsEucl=75; rSSD=85; rNSW=79; rank_mean=71.857; match_rank=81 a 0 0 167 123 575 0 1 13 3 55 5 600 603 0 211 146 0 c 0 0 140 130 5 3 2 0 607 14 591 4 3 600 141 149 0 g 0 0 134 195 23 1 2 584 0 95 0 1 2 1 107 154 0 t 0 0 169 162 7 606 605 13 0 446 14 5 2 9 151 161 0 // ; oligos_7nt_mkv5_m1 versus positions_7nt_m3_rc; m=15/15; ncol2=16; w=15; offset=0; strand=R; shift=2; score= 76; --wyATTTCGCAATCTy ; cor=0.777; Ncor=0.729; logoDP=2.756; NIcor=0.040; NsEucl=0.916; SSD=3.156; NSW=0.895; rcor=78; rNcor=55; rlogoDP=92; rNIcor=90; rNsEucl=60; rSSD=87; rNSW=70; rank_mean=76.000; match_rank=87 a 0 0 117 93 410 0 0 18 14 71 4 433 434 3 41 19 84 c 0 0 76 112 7 1 0 2 366 24 423 1 0 11 351 9 129 g 0 0 90 102 15 0 10 17 14 303 0 0 0 6 27 4 108 t 0 0 151 127 2 433 424 397 40 36 7 0 0 414 15 402 113 // ; ; One-to-n matrix alignment; reference matrix: positions_6nt_m1_shift0 ; 4 matrices ; sort_field=rank_mean ; positions_6nt_m1; m=0 (reference); ncol1=15; shift=0; ncol=16; wwAGATTGTGAAAtm- ; Alignment reference a 358 258 771 43 867 5 8 37 26 3 721 851 886 58 368 0 c 124 176 20 25 8 5 2 2 40 1 82 31 1 184 243 0 g 173 214 31 694 17 3 17 852 7 889 6 5 6 111 102 0 t 242 249 75 135 5 884 870 6 824 4 88 10 4 544 184 0 // ; positions_6nt_m1 versus positions_7nt_m3; m=1/3; ncol2=16; w=15; offset=0; strand=D; shift=0; score=13.4286; arAGATTGCGAAATrw ; cor=0.911; Ncor=0.854; logoDP=11.901; NIcor=0.841; NsEucl=0.947; SSD=1.283; NSW=0.957; rcor=13; rNcor=8; rlogoDP=26; rNIcor=6; rNsEucl=13; rSSD=15; rNSW=13; rank_mean=13.429; match_rank=7 a 162 113 402 15 414 0 0 7 36 40 397 424 433 2 127 151 c 77 108 4 27 6 0 0 0 303 14 17 10 0 15 102 90 g 99 129 9 351 11 0 1 423 24 366 2 0 1 7 112 76 t 96 84 19 41 3 434 433 4 71 14 18 0 0 410 93 117 // ; positions_6nt_m1 versus positions_7nt_m1_rc; m=2/3; ncol2=15; w=14; offset=1; strand=R; shift=1; score=27.5714; -dwGATTGTGAAATaw ; cor=0.959; Ncor=0.839; logoDP=4.409; NIcor=0.160; NsEucl=0.962; SSD=0.573; NSW=0.980; rcor=5; rNcor=13; rlogoDP=80; rNIcor=81; rNsEucl=4; rSSD=5; rNSW=5; rank_mean=27.571; match_rank=20 a 0 458 470 73 1319 6 3 46 48 2 1106 1351 1393 9 610 423 c 0 229 157 45 13 7 1 6 48 3 167 46 4 33 341 318 g 0 372 302 1058 64 4 34 1344 26 1403 9 7 9 17 243 279 t 0 355 485 238 18 1397 1376 18 1292 6 132 10 8 1355 220 394 // ; positions_6nt_m1 versus positions_8nt_m3; m=3/3; ncol2=16; w=15; offset=0; strand=D; shift=0; score=50.2857; wrTGATTGTGCAAgad ; cor=0.791; Ncor=0.742; logoDP=11.855; NIcor=0.737; NsEucl=0.918; SSD=3.021; NSW=0.899; rcor=66; rNcor=48; rlogoDP=27; rNIcor=23; rNsEucl=51; rSSD=78; rNSW=59; rank_mean=50.286; match_rank=46 a 189 178 43 19 598 4 1 25 18 1 25 643 642 19 276 169 c 144 133 14 20 13 4 1 4 12 1 594 5 0 72 133 149 g 141 180 25 586 24 1 10 600 7 642 3 0 4 416 107 167 t 174 157 566 23 13 639 636 19 611 4 26 0 2 141 132 163 // ; ; One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m3_shift2 ; 8 matrices ; sort_field=rank_mean ; oligos_8nt_mkv6_m3; m=0 (reference); ncol1=14; shift=2; ncol=16; --wtATTGAGCAATaw ; Alignment reference a 0 0 1047 667 2712 14 18 176 2365 4 73 3285 3285 91 1402 945 c 0 0 570 504 181 5 5 8 210 9 3122 9 9 294 644 732 g 0 0 771 667 330 10 17 3025 85 3279 5 4 4 215 531 674 t 0 0 918 1468 83 3277 3266 97 646 14 106 8 8 2706 729 955 // ; oligos_8nt_mkv6_m3 versus positions_8nt_m2; m=1/7; ncol2=14; w=14; offset=0; strand=D; shift=2; score=17.7143; --mtGTTGAGCAATmw ; cor=0.881; Ncor=0.881; logoDP=11.903; NIcor=0.879; NsEucl=0.937; SSD=1.548; NSW=0.945; rcor=23; rNcor=7; rlogoDP=24; rNIcor=4; rNsEucl=22; rSSD=22; rNSW=22; rank_mean=17.714; match_rank=8 a 0 0 161 151 9 2 5 14 446 0 13 605 606 7 162 169 c 0 0 154 107 1 2 1 0 95 0 584 2 1 23 195 134 g 0 0 149 141 600 3 4 591 14 607 0 2 3 5 130 140 t 0 0 146 211 0 603 600 5 55 3 13 1 0 575 123 167 // ; oligos_8nt_mkv6_m3 versus positions_8nt_m4_rc; m=2/7; ncol2=14; w=14; offset=0; strand=R; shift=2; score= 20; --wtATTGGGCAATaw ; cor=0.902; Ncor=0.902; logoDP=10.454; NIcor=0.770; NsEucl=0.944; SSD=1.223; NSW=0.956; rcor=16; rNcor=6; rlogoDP=57; rNIcor=18; rNsEucl=15; rSSD=14; rNSW=14; rank_mean=20.000; match_rank=12 a 0 0 362 265 820 0 1 12 9 0 2 1125 1127 43 407 317 c 0 0 202 192 78 0 3 5 148 0 1114 1 0 141 259 245 g 0 0 274 261 179 0 4 1106 936 1126 0 1 0 94 213 230 t 0 0 290 410 51 1128 1120 5 35 2 12 1 1 850 249 336 // ; oligos_8nt_mkv6_m3 versus oligos_8nt_mkv6_m5_rc; m=3/7; ncol2=12; w=12; offset=1; strand=R; shift=3; score=55.2857; ---trTTGGGCAAkw- ; cor=0.828; Ncor=0.710; logoDP=10.178; NIcor=0.578; NsEucl=0.915; SSD=2.096; NSW=0.913; rcor=47; rNcor=63; rlogoDP=61; rNIcor=65; rNsEucl=64; rSSD=38; rNSW=49; rank_mean=55.286; match_rank=52 a 0 0 0 436 654 0 0 1 2 0 2 1909 1909 283 567 0 c 0 0 0 462 440 0 3 0 50 0 1907 0 0 462 403 0 g 0 0 0 399 578 1 0 1908 1852 1909 0 0 0 478 413 0 t 0 0 0 612 237 1908 1906 0 5 0 0 0 0 686 526 0 // ; oligos_8nt_mkv6_m3 versus positions_8nt_m3; m=4/7; ncol2=16; w=14; offset=-2; strand=D; shift=0; score=60.8571; wrTGATTGTGCAAgad ; cor=0.788; Ncor=0.689; logoDP=11.314; NIcor=0.672; NsEucl=0.913; SSD=2.934; NSW=0.895; rcor=68; rNcor=70; rlogoDP=38; rNIcor=38; rNsEucl=68; rSSD=75; rNSW=69; rank_mean=60.857; match_rank=64 a 189 178 43 19 598 4 1 25 18 1 25 643 642 19 276 169 c 144 133 14 20 13 4 1 4 12 1 594 5 0 72 133 149 g 141 180 25 586 24 1 10 600 7 642 3 0 4 416 107 167 t 174 157 566 23 13 639 636 19 611 4 26 0 2 141 132 163 // ; oligos_8nt_mkv6_m3 versus positions_7nt_m1_rc; m=5/7; ncol2=15; w=14; offset=-1; strand=R; shift=1; score=63.8571; -dwGATTGTGAAATaw ; cor=0.793; Ncor=0.740; logoDP=4.466; NIcor=0.194; NsEucl=0.917; SSD=2.723; NSW=0.903; rcor=62; rNcor=49; rlogoDP=79; rNIcor=79; rNsEucl=58; rSSD=63; rNSW=57; rank_mean=63.857; match_rank=69 a 0 458 470 73 1319 6 3 46 48 2 1106 1351 1393 9 610 423 c 0 229 157 45 13 7 1 6 48 3 167 46 4 33 341 318 g 0 372 302 1058 64 4 34 1344 26 1403 9 7 9 17 243 279 t 0 355 485 238 18 1397 1376 18 1292 6 132 10 8 1355 220 394 // ; oligos_8nt_mkv6_m3 versus oligos_8nt_mkv6_m4_rc; m=6/7; ncol2=13; w=13; offset=0; strand=R; shift=2; score=77.1429; --dtATTGTGTAAyw- ; cor=0.765; Ncor=0.710; logoDP=3.926; NIcor=0.127; NsEucl=0.908; SSD=2.863; NSW=0.890; rcor=87; rNcor=62; rlogoDP=87; rNIcor=83; rNsEucl=80; rSSD=67; rNSW=74; rank_mean=77.143; match_rank=91 a 0 0 786 613 1807 10 10 48 15 8 9 2485 2478 214 862 0 c 0 0 404 399 175 8 21 0 516 2 10 10 8 662 555 0 g 0 0 645 571 391 2 4 2449 7 2486 0 0 3 375 367 0 t 0 0 663 915 125 2478 2463 1 1960 2 2479 3 9 1247 714 0 // ; oligos_8nt_mkv6_m3 versus positions_6nt_m1; m=7/7; ncol2=15; w=13; offset=-2; strand=D; shift=0; score=84.8571; wwAGATTGTGAAAtm- ; cor=0.751; Ncor=0.610; logoDP=10.223; NIcor=0.591; NsEucl=0.901; SSD=3.292; NSW=0.873; rcor=100; rNcor=97; rlogoDP=59; rNIcor=61; rNsEucl=91; rSSD=92; rNSW=94; rank_mean=84.857; match_rank=96 a 358 258 771 43 867 5 8 37 26 3 721 851 886 58 368 0 c 124 176 20 25 8 5 2 2 40 1 82 31 1 184 243 0 g 173 214 31 694 17 3 17 852 7 889 6 5 6 111 102 0 t 242 249 75 135 5 884 870 6 824 4 88 10 4 544 184 0 // ; ; One-to-n matrix alignment; reference matrix: positions_7nt_m2_shift0 ; 4 matrices ; sort_field=rank_mean ; positions_7nt_m2; m=0 (reference); ncol1=17; shift=0; ncol=17; rmAGATTGCACAACTyt ; Alignment reference a 94 132 262 16 316 0 0 10 2 313 7 332 335 6 35 67 74 c 72 86 4 10 5 0 0 0 332 11 320 3 0 297 15 106 77 g 95 78 9 279 13 1 2 311 1 1 1 1 0 7 2 77 54 t 75 40 61 31 2 335 334 15 1 11 8 0 1 26 284 86 131 // ; positions_7nt_m2 versus positions_8nt_m1; m=1/3; ncol2=16; w=16; offset=0; strand=D; shift=0; score=18.4286; amAGATTGCAAAACww- ; cor=0.885; Ncor=0.833; logoDP=12.893; NIcor=0.822; NsEucl=0.941; SSD=1.800; NSW=0.944; rcor=22; rNcor=17; rlogoDP=12; rNIcor=10; rNsEucl=17; rSSD=28; rNSW=23; rank_mean=18.429; match_rank=9 a 173 182 485 53 502 2 2 12 3 522 456 527 540 8 217 164 0 c 113 162 5 27 15 3 0 2 544 6 70 25 3 483 124 121 0 g 134 133 23 442 22 2 2 523 5 15 2 2 7 23 44 128 0 t 134 77 41 32 15 547 550 17 2 11 26 0 4 40 169 141 0 // ; positions_7nt_m2 versus positions_8nt_m2_rc; m=2/3; ncol2=14; w=14; offset=2; strand=R; shift=2; score=55.7143; --wkATTGCTCAACak- ; cor=0.840; Ncor=0.692; logoDP=9.736; NIcor=0.387; NsEucl=0.921; SSD=2.420; NSW=0.914; rcor=41; rNcor=68; rlogoDP=68; rNIcor=74; rNsEucl=44; rSSD=50; rNSW=45; rank_mean=55.714; match_rank=53 a 0 0 167 123 575 0 1 13 3 55 5 600 603 0 211 146 0 c 0 0 140 130 5 3 2 0 607 14 591 4 3 600 141 149 0 g 0 0 134 195 23 1 2 584 0 95 0 1 2 1 107 154 0 t 0 0 169 162 7 606 605 13 0 446 14 5 2 9 151 161 0 // ; positions_7nt_m2 versus positions_7nt_m5; m=3/3; ncol2=17; w=17; offset=0; strand=D; shift=0; score=57.8571; wyCTCTTGCACAACTbh ; cor=0.754; Ncor=0.754; logoDP=13.371; NIcor=0.772; NsEucl=0.917; SSD=3.992; NSW=0.883; rcor=97; rNcor=44; rlogoDP=8; rNIcor=17; rNsEucl=57; rSSD=99; rNSW=83; rank_mean=57.857; match_rank=57 a 53 47 13 1 20 0 1 2 0 181 11 196 198 3 6 36 50 c 42 60 160 8 161 0 0 0 199 8 186 2 1 179 15 54 54 g 46 38 9 0 18 0 1 190 1 3 1 1 0 3 4 54 25 t 59 55 18 191 1 200 198 8 0 8 2 1 1 15 175 56 71 // ; ; One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m1_shift2 ; 18 matrices ; sort_field=rank_mean ; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=15; shift=2; ncol=17; --dkATTGTGCAATCwt ; Alignment reference a 0 0 1020 725 2836 11 6 122 129 5 244 3304 3306 61 474 1385 763 c 0 0 526 533 95 7 0 18 37 1 2943 18 4 304 2273 689 753 g 0 0 848 851 351 11 35 3080 63 3310 7 1 6 79 297 338 629 t 0 0 930 1215 42 3295 3283 104 3095 8 130 1 8 2880 280 912 1179 // ; oligos_6nt_mkv4_m1 versus oligos_8nt_mkv6_m3; m=1/17; ncol2=14; w=14; offset=0; strand=D; shift=2; score=18.4286; --wtATTGAGCAATaw- ; cor=0.893; Ncor=0.834; logoDP=11.635; NIcor=0.829; NsEucl=0.940; SSD=1.395; NSW=0.950; rcor=18; rNcor=16; rlogoDP=34; rNIcor=7; rNsEucl=18; rSSD=18; rNSW=18; rank_mean=18.429; match_rank=10 a 0 0 1047 667 2712 14 18 176 2365 4 73 3285 3285 91 1402 945 0 c 0 0 570 504 181 5 5 8 210 9 3122 9 9 294 644 732 0 g 0 0 771 667 330 10 17 3025 85 3279 5 4 4 215 531 674 0 t 0 0 918 1468 83 3277 3266 97 646 14 106 8 8 2706 729 955 0 // ; oligos_6nt_mkv4_m1 versus oligos_8nt_mkv6_m2; m=2/17; ncol2=14; w=14; offset=0; strand=D; shift=2; score= 21; --wkATTGTGAAATaw- ; cor=0.886; Ncor=0.827; logoDP=11.582; NIcor=0.824; NsEucl=0.938; SSD=1.496; NSW=0.947; rcor=21; rNcor=21; rlogoDP=36; rNIcor=8; rNsEucl=21; rSSD=20; rNSW=20; rank_mean=21.000; match_rank=13 a 0 0 1314 898 3074 24 26 71 73 20 3257 3961 4033 93 1624 1211 0 c 0 0 660 557 241 11 10 15 263 2 360 61 7 335 985 878 0 g 0 0 993 1040 571 8 33 3952 36 4011 11 6 7 248 674 788 0 t 0 0 1090 1562 171 4014 3988 19 3685 24 429 29 10 3381 774 1180 0 // ; oligos_6nt_mkv4_m1 versus oligos_7nt_mkv5_m1_rc; m=3/17; ncol2=15; w=14; offset=-1; strand=R; shift=1; score=29.1429; -rwgATTGTGCAATmw- ; cor=0.966; Ncor=0.845; logoDP=3.903; NIcor=0.018; NsEucl=0.966; SSD=0.466; NSW=0.983; rcor=3; rNcor=11; rlogoDP=88; rNIcor=92; rNsEucl=3; rSSD=4; rNSW=3; rank_mean=29.143; match_rank=22 a 0 967 943 326 2673 12 4 193 122 5 178 2954 2948 60 1011 926 0 c 0 499 299 243 67 12 2 10 37 3 2652 12 8 181 810 620 0 g 0 784 703 1897 195 5 35 2728 44 2960 10 0 12 127 555 545 0 t 0 722 1027 506 37 2943 2931 41 2769 4 132 6 4 2604 596 881 0 // ; oligos_6nt_mkv4_m1 versus oligos_6nt_mkv4_m5_rc; m=4/17; ncol2=15; w=15; offset=0; strand=R; shift=2; score=30.8571; --rwGTTGTGCAATCat ; cor=0.921; Ncor=0.921; logoDP=4.120; NIcor=0.083; NsEucl=0.951; SSD=1.079; NSW=0.964; rcor=11; rNcor=3; rlogoDP=84; rNIcor=86; rNsEucl=10; rSSD=11; rNSW=11; rank_mean=30.857; match_rank=24 a 0 0 700 788 373 9 1 84 89 9 209 2716 2719 44 252 1335 622 c 0 0 542 167 95 11 2 16 31 2 2440 10 4 474 2173 485 582 g 0 0 807 617 2218 10 26 2532 51 2710 6 1 4 56 158 241 475 t 0 0 679 1156 42 2698 2699 96 2557 7 73 1 1 2154 145 667 1049 // ; oligos_6nt_mkv4_m1 versus positions_8nt_m4_rc; m=5/17; ncol2=14; w=14; offset=0; strand=R; shift=2; score=35.4286; --wtATTGGGCAATaw- ; cor=0.859; Ncor=0.802; logoDP=10.335; NIcor=0.676; NsEucl=0.931; SSD=1.857; NSW=0.934; rcor=33; rNcor=30; rlogoDP=58; rNIcor=36; rNsEucl=31; rSSD=30; rNSW=30; rank_mean=35.429; match_rank=28 a 0 0 362 265 820 0 1 12 9 0 2 1125 1127 43 407 317 0 c 0 0 202 192 78 0 3 5 148 0 1114 1 0 141 259 245 0 g 0 0 274 261 179 0 4 1106 936 1126 0 1 0 94 213 230 0 t 0 0 290 410 51 1128 1120 5 35 2 12 1 1 850 249 336 0 // ; oligos_6nt_mkv4_m1 versus positions_8nt_m3; m=6/17; ncol2=16; w=14; offset=-2; strand=D; shift=0; score=40.1429; wrTGATTGTGCAAgad- ; cor=0.843; Ncor=0.694; logoDP=12.240; NIcor=0.685; NsEucl=0.924; SSD=2.253; NSW=0.920; rcor=39; rNcor=67; rlogoDP=18; rNIcor=35; rNsEucl=38; rSSD=44; rNSW=40; rank_mean=40.143; match_rank=34 a 189 178 43 19 598 4 1 25 18 1 25 643 642 19 276 169 0 c 144 133 14 20 13 4 1 4 12 1 594 5 0 72 133 149 0 g 141 180 25 586 24 1 10 600 7 642 3 0 4 416 107 167 0 t 174 157 566 23 13 639 636 19 611 4 26 0 2 141 132 163 0 // ; oligos_6nt_mkv4_m1 versus positions_7nt_m1_rc; m=7/17; ncol2=15; w=14; offset=-1; strand=R; shift=1; score=44.5714; -dwGATTGTGAAATaw- ; cor=0.871; Ncor=0.762; logoDP=4.227; NIcor=0.089; NsEucl=0.933; SSD=1.771; NSW=0.937; rcor=27; rNcor=38; rlogoDP=82; rNIcor=84; rNsEucl=27; rSSD=27; rNSW=27; rank_mean=44.571; match_rank=39 a 0 458 470 73 1319 6 3 46 48 2 1106 1351 1393 9 610 423 0 c 0 229 157 45 13 7 1 6 48 3 167 46 4 33 341 318 0 g 0 372 302 1058 64 4 34 1344 26 1403 9 7 9 17 243 279 0 t 0 355 485 238 18 1397 1376 18 1292 6 132 10 8 1355 220 394 0 // ; oligos_6nt_mkv4_m1 versus oligos_8nt_mkv6_m1_rc; m=8/17; ncol2=15; w=15; offset=0; strand=R; shift=2; score=45.5714; --dwGTTGTGCAACCat ; cor=0.847; Ncor=0.847; logoDP=4.114; NIcor=0.084; NsEucl=0.931; SSD=2.128; NSW=0.929; rcor=37; rNcor=10; rlogoDP=85; rNIcor=85; rNsEucl=30; rSSD=39; rNSW=33; rank_mean=45.571; match_rank=40 a 0 0 570 597 309 7 1 69 52 6 38 2218 2212 46 258 1186 414 c 0 0 460 136 50 6 1 10 72 4 2107 4 1 1769 1759 340 470 g 0 0 624 418 1847 4 12 2086 43 2211 3 0 10 55 30 252 349 t 0 0 570 1073 18 2207 2210 59 2057 3 76 2 1 354 177 446 991 // ; oligos_6nt_mkv4_m1 versus positions_7nt_m2_rc; m=9/17; ncol2=17; w=15; offset=-1; strand=R; shift=1; score=50.5714; -arAGTTGTGCAATCTk ; cor=0.858; Ncor=0.757; logoDP=4.177; NIcor=0.042; NsEucl=0.931; SSD=2.166; NSW=0.928; rcor=34; rNcor=41; rlogoDP=83; rNIcor=89; rNsEucl=33; rSSD=40; rNSW=34; rank_mean=50.571; match_rank=47 a 0 131 86 284 26 1 0 8 11 1 15 334 335 2 31 61 40 c 0 54 77 2 7 0 1 1 1 1 311 2 1 13 279 9 78 g 0 77 106 15 297 0 3 320 11 332 0 0 0 5 10 4 86 t 0 74 67 35 6 335 332 7 313 2 10 0 0 316 16 262 132 // ; oligos_6nt_mkv4_m1 versus positions_8nt_m5_rc; m=10/17; ncol2=17; w=15; offset=-1; strand=R; shift=1; score= 52; -awTrTTGTGCAACCAt ; cor=0.860; Ncor=0.758; logoDP=4.108; NIcor=0.026; NsEucl=0.930; SSD=2.232; NSW=0.926; rcor=32; rNcor=40; rlogoDP=86; rNIcor=91; rNsEucl=36; rSSD=42; rNSW=37; rank_mean=52.000; match_rank=50 a 0 395 177 36 389 2 0 7 5 3 6 645 645 6 14 603 102 c 0 48 147 34 12 0 0 1 4 0 627 0 0 576 612 19 112 g 0 111 148 29 239 0 1 634 3 642 2 0 0 8 1 6 82 t 0 92 174 547 6 644 645 4 634 1 11 1 1 56 19 18 350 // ; oligos_6nt_mkv4_m1 versus positions_6nt_m1; m=11/17; ncol2=15; w=13; offset=-2; strand=D; shift=0; score=53.7143; wwAGATTGTGAAAtm-- ; cor=0.831; Ncor=0.636; logoDP=11.338; NIcor=0.619; NsEucl=0.917; SSD=2.316; NSW=0.911; rcor=45; rNcor=88; rlogoDP=37; rNIcor=53; rNsEucl=55; rSSD=47; rNSW=51; rank_mean=53.714; match_rank=51 a 358 258 771 43 867 5 8 37 26 3 721 851 886 58 368 0 0 c 124 176 20 25 8 5 2 2 40 1 82 31 1 184 243 0 0 g 173 214 31 694 17 3 17 852 7 889 6 5 6 111 102 0 0 t 242 249 75 135 5 884 870 6 824 4 88 10 4 544 184 0 0 // ; oligos_6nt_mkv4_m1 versus positions_8nt_m2; m=12/17; ncol2=14; w=14; offset=0; strand=D; shift=2; score=55.7143; --mtGTTGAGCAATmw- ; cor=0.783; Ncor=0.731; logoDP=11.851; NIcor=0.726; NsEucl=0.914; SSD=2.929; NSW=0.895; rcor=72; rNcor=54; rlogoDP=29; rNIcor=26; rNsEucl=67; rSSD=74; rNSW=68; rank_mean=55.714; match_rank=55 a 0 0 161 151 9 2 5 14 446 0 13 605 606 7 162 169 0 c 0 0 154 107 1 2 1 0 95 0 584 2 1 23 195 134 0 g 0 0 149 141 600 3 4 591 14 607 0 2 3 5 130 140 0 t 0 0 146 211 0 603 600 5 55 3 13 1 0 575 123 167 0 // ; oligos_6nt_mkv4_m1 versus oligos_8nt_mkv6_m4_rc; m=13/17; ncol2=13; w=13; offset=0; strand=R; shift=2; score=61.8571; --dtATTGTGTAAyw-- ; cor=0.823; Ncor=0.714; logoDP=3.752; NIcor=0.050; NsEucl=0.918; SSD=2.264; NSW=0.913; rcor=49; rNcor=61; rlogoDP=91; rNIcor=88; rNsEucl=50; rSSD=46; rNSW=48; rank_mean=61.857; match_rank=67 a 0 0 786 613 1807 10 10 48 15 8 9 2485 2478 214 862 0 0 c 0 0 404 399 175 8 21 0 516 2 10 10 8 662 555 0 0 g 0 0 645 571 391 2 4 2449 7 2486 0 0 3 375 367 0 0 t 0 0 663 915 125 2478 2463 1 1960 2 2479 3 9 1247 714 0 0 // ; oligos_6nt_mkv4_m1 versus positions_8nt_m1_rc; m=14/17; ncol2=16; w=15; offset=0; strand=R; shift=2; score=67.1429; --wwGTTTTGCAATCTk ; cor=0.784; Ncor=0.735; logoDP=6.923; NIcor=0.386; NsEucl=0.918; SSD=3.061; NSW=0.898; rcor=70; rNcor=51; rlogoDP=76; rNIcor=75; rNsEucl=53; rSSD=81; rNSW=64; rank_mean=67.143; match_rank=74 a 0 0 141 169 40 4 0 26 11 2 17 550 547 15 32 41 77 c 0 0 128 44 23 7 2 2 15 5 523 2 2 22 442 23 133 g 0 0 121 124 483 3 25 70 6 544 2 0 3 15 27 5 162 t 0 0 164 217 8 540 527 456 522 3 12 2 2 502 53 485 182 // ; oligos_6nt_mkv4_m1 versus oligos_7nt_mkv5_m3_rc; m=15/17; ncol2=13; w=13; offset=0; strand=R; shift=2; score=71.1429; --wwaTTGTGTAAyw-- ; cor=0.793; Ncor=0.687; logoDP=3.872; NIcor=0.061; NsEucl=0.912; SSD=2.627; NSW=0.899; rcor=61; rNcor=71; rlogoDP=89; rNIcor=87; rNsEucl=72; rSSD=57; rNSW=61; rank_mean=71.143; match_rank=78 a 0 0 792 757 1101 6 2 3 0 1 0 2936 2554 444 957 0 0 c 0 0 590 442 388 3 13 0 15 0 0 0 112 744 669 0 0 g 0 0 708 718 720 3 0 2935 0 2937 0 1 61 523 454 0 0 t 0 0 848 1021 729 2926 2923 0 2923 0 2938 1 211 1227 858 0 0 // ; oligos_6nt_mkv4_m1 versus oligos_7nt_mkv5_m5_rc; m=16/17; ncol2=12; w=12; offset=1; strand=R; shift=3; score=71.8571; ---trTTGAGCAAyw-- ; cor=0.795; Ncor=0.636; logoDP=9.955; NIcor=0.510; NsEucl=0.904; SSD=2.649; NSW=0.890; rcor=60; rNcor=87; rlogoDP=64; rNIcor=69; rNsEucl=88; rSSD=59; rNSW=76; rank_mean=71.857; match_rank=82 a 0 0 0 682 1171 0 0 0 2800 0 0 2810 2811 328 927 0 0 c 0 0 0 465 492 0 0 0 6 0 2811 0 0 755 602 0 0 g 0 0 0 675 857 0 0 2811 0 2811 0 1 0 563 484 0 0 t 0 0 0 989 291 2811 2811 0 5 0 0 0 0 1165 798 0 0 // ; oligos_6nt_mkv4_m1 versus oligos_8nt_mkv6_m5_rc; m=17/17; ncol2=12; w=12; offset=1; strand=R; shift=3; score=76.8571; ---trTTGGGCAAkw-- ; cor=0.781; Ncor=0.624; logoDP=9.912; NIcor=0.499; NsEucl=0.901; SSD=2.808; NSW=0.883; rcor=73; rNcor=90; rlogoDP=66; rNIcor=71; rNsEucl=92; rSSD=64; rNSW=82; rank_mean=76.857; match_rank=90 a 0 0 0 436 654 0 0 1 2 0 2 1909 1909 283 567 0 0 c 0 0 0 462 440 0 3 0 50 0 1907 0 0 462 403 0 0 g 0 0 0 399 578 1 0 1908 1852 1909 0 0 0 478 413 0 0 t 0 0 0 612 237 1908 1906 0 5 0 0 0 0 686 526 0 0 // ; ; One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m2_shift2 ; 8 matrices ; sort_field=rank_mean ; oligos_8nt_mkv6_m2; m=0 (reference); ncol1=14; shift=2; ncol=16; --wkATTGTGAAATaw ; Alignment reference a 0 0 1314 898 3074 24 26 71 73 20 3257 3961 4033 93 1624 1211 c 0 0 660 557 241 11 10 15 263 2 360 61 7 335 985 878 g 0 0 993 1040 571 8 33 3952 36 4011 11 6 7 248 674 788 t 0 0 1090 1562 171 4014 3988 19 3685 24 429 29 10 3381 774 1180 // ; oligos_8nt_mkv6_m2 versus positions_6nt_m1; m=1/7; ncol2=15; w=13; offset=-2; strand=D; shift=0; score= 20; wwAGATTGTGAAAtm- ; cor=0.934; Ncor=0.759; logoDP=11.174; NIcor=0.746; NsEucl=0.949; SSD=0.892; NSW=0.966; rcor=10; rNcor=39; rlogoDP=41; rNIcor=20; rNsEucl=12; rSSD=8; rNSW=10; rank_mean=20.000; match_rank=11 a 358 258 771 43 867 5 8 37 26 3 721 851 886 58 368 0 c 124 176 20 25 8 5 2 2 40 1 82 31 1 184 243 0 g 173 214 31 694 17 3 17 852 7 889 6 5 6 111 102 0 t 242 249 75 135 5 884 870 6 824 4 88 10 4 544 184 0 // ; oligos_8nt_mkv6_m2 versus positions_7nt_m1_rc; m=2/7; ncol2=15; w=14; offset=-1; strand=R; shift=1; score=24.1429; -dwGATTGTGAAATaw ; cor=0.970; Ncor=0.905; logoDP=4.643; NIcor=0.212; NsEucl=0.968; SSD=0.410; NSW=0.985; rcor=2; rNcor=5; rlogoDP=78; rNIcor=78; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=24.143; match_rank=14 a 0 458 470 73 1319 6 3 46 48 2 1106 1351 1393 9 610 423 c 0 229 157 45 13 7 1 6 48 3 167 46 4 33 341 318 g 0 372 302 1058 64 4 34 1344 26 1403 9 7 9 17 243 279 t 0 355 485 238 18 1397 1376 18 1292 6 132 10 8 1355 220 394 // ; oligos_8nt_mkv6_m2 versus positions_7nt_m3; m=3/7; ncol2=16; w=14; offset=-2; strand=D; shift=0; score=37.4286; arAGATTGCGAAATrw ; cor=0.853; Ncor=0.747; logoDP=11.108; NIcor=0.724; NsEucl=0.928; SSD=2.026; NSW=0.928; rcor=36; rNcor=47; rlogoDP=44; rNIcor=27; rNsEucl=37; rSSD=36; rNSW=35; rank_mean=37.429; match_rank=29 a 162 113 402 15 414 0 0 7 36 40 397 424 433 2 127 151 c 77 108 4 27 6 0 0 0 303 14 17 10 0 15 102 90 g 99 129 9 351 11 0 1 423 24 366 2 0 1 7 112 76 t 96 84 19 41 3 434 433 4 71 14 18 0 0 410 93 117 // ; oligos_8nt_mkv6_m2 versus oligos_8nt_mkv6_m3; m=4/7; ncol2=14; w=14; offset=0; strand=D; shift=2; score=40.2857; --wtATTGAGCAATaw ; cor=0.809; Ncor=0.809; logoDP=10.494; NIcor=0.806; NsEucl=0.922; SSD=2.366; NSW=0.916; rcor=53; rNcor=27; rlogoDP=55; rNIcor=14; rNsEucl=42; rSSD=48; rNSW=43; rank_mean=40.286; match_rank=35 a 0 0 1047 667 2712 14 18 176 2365 4 73 3285 3285 91 1402 945 c 0 0 570 504 181 5 5 8 210 9 3122 9 9 294 644 732 g 0 0 771 667 330 10 17 3025 85 3279 5 4 4 215 531 674 t 0 0 918 1468 83 3277 3266 97 646 14 106 8 8 2706 729 955 // ; oligos_8nt_mkv6_m2 versus oligos_8nt_mkv6_m4_rc; m=5/7; ncol2=13; w=13; offset=0; strand=R; shift=2; score=43.1429; --dtATTGTGTAAyw- ; cor=0.865; Ncor=0.803; logoDP=4.262; NIcor=0.167; NsEucl=0.930; SSD=1.642; NSW=0.937; rcor=28; rNcor=29; rlogoDP=81; rNIcor=80; rNsEucl=34; rSSD=24; rNSW=26; rank_mean=43.143; match_rank=36 a 0 0 786 613 1807 10 10 48 15 8 9 2485 2478 214 862 0 c 0 0 404 399 175 8 21 0 516 2 10 10 8 662 555 0 g 0 0 645 571 391 2 4 2449 7 2486 0 0 3 375 367 0 t 0 0 663 915 125 2478 2463 1 1960 2 2479 3 9 1247 714 0 // ; oligos_8nt_mkv6_m2 versus positions_8nt_m4_rc; m=6/7; ncol2=14; w=14; offset=0; strand=R; shift=2; score=63.8571; --wtATTGGGCAATaw ; cor=0.767; Ncor=0.767; logoDP=9.348; NIcor=0.630; NsEucl=0.914; SSD=2.925; NSW=0.896; rcor=85; rNcor=36; rlogoDP=71; rNIcor=50; rNsEucl=66; rSSD=72; rNSW=67; rank_mean=63.857; match_rank=71 a 0 0 362 265 820 0 1 12 9 0 2 1125 1127 43 407 317 c 0 0 202 192 78 0 3 5 148 0 1114 1 0 141 259 245 g 0 0 274 261 179 0 4 1106 936 1126 0 1 0 94 213 230 t 0 0 290 410 51 1128 1120 5 35 2 12 1 1 850 249 336 // ; oligos_8nt_mkv6_m2 versus positions_8nt_m3; m=7/7; ncol2=16; w=14; offset=-2; strand=D; shift=0; score=69.4286; wrTGATTGTGCAAgad ; cor=0.773; Ncor=0.677; logoDP=11.122; NIcor=0.662; NsEucl=0.911; SSD=3.133; NSW=0.888; rcor=80; rNcor=77; rlogoDP=43; rNIcor=44; rNsEucl=76; rSSD=86; rNSW=80; rank_mean=69.429; match_rank=77 a 189 178 43 19 598 4 1 25 18 1 25 643 642 19 276 169 c 144 133 14 20 13 4 1 4 12 1 594 5 0 72 133 149 g 141 180 25 586 24 1 10 600 7 642 3 0 4 416 107 167 t 174 157 566 23 13 639 636 19 611 4 26 0 2 141 132 163 // ; ; One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m5_shift2 ; 7 matrices ; sort_field=rank_mean ; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=12; shift=2; ncol=16; --wrTTGCTCAAya-- ; Alignment reference a 0 0 798 1165 0 0 0 0 5 0 2811 2811 291 989 0 0 c 0 0 484 563 0 1 0 2811 0 2811 0 0 857 675 0 0 g 0 0 602 755 0 0 2811 0 6 0 0 0 492 465 0 0 t 0 0 927 328 2811 2810 0 0 2800 0 0 0 1171 682 0 0 // ; oligos_7nt_mkv5_m5 versus oligos_8nt_mkv6_m3_rc; m=1/6; ncol2=14; w=12; offset=-1; strand=R; shift=1; score=24.7143; -wtATTGCTCAATaw- ; cor=0.950; Ncor=0.815; logoDP=10.213; NIcor=0.589; NsEucl=0.954; SSD=0.609; NSW=0.975; rcor=6; rNcor=24; rlogoDP=60; rNIcor=62; rNsEucl=9; rSSD=6; rNSW=6; rank_mean=24.714; match_rank=15 a 0 955 729 2706 8 8 106 14 646 97 3266 3277 83 1468 918 0 c 0 674 531 215 4 4 5 3279 85 3025 17 10 330 667 771 0 g 0 732 644 294 9 9 3122 9 210 8 5 5 181 504 570 0 t 0 945 1402 91 3285 3285 73 4 2365 176 18 14 2712 667 1047 0 // ; oligos_7nt_mkv5_m5 versus oligos_8nt_mkv6_m5; m=2/6; ncol2=12; w=12; offset=0; strand=D; shift=2; score= 28; --wmTTGCCCAAya-- ; cor=0.838; Ncor=0.838; logoDP=13.406; NIcor=0.856; NsEucl=0.918; SSD=1.959; NSW=0.918; rcor=42; rNcor=14; rlogoDP=6; rNIcor=5; rNsEucl=54; rSSD=34; rNSW=41; rank_mean=28.000; match_rank=21 a 0 0 526 686 0 0 0 0 5 0 1906 1908 237 612 0 0 c 0 0 413 478 0 0 0 1909 1852 1908 0 1 578 399 0 0 g 0 0 403 462 0 0 1907 0 50 0 3 0 440 462 0 0 t 0 0 567 283 1909 1909 2 0 2 1 0 0 654 436 0 0 // ; oligos_7nt_mkv5_m5 versus positions_8nt_m2_rc; m=3/6; ncol2=14; w=12; offset=-1; strand=R; shift=1; score= 31; -wkATTGCTCAACak- ; cor=0.909; Ncor=0.780; logoDP=10.667; NIcor=0.547; NsEucl=0.936; SSD=1.174; NSW=0.951; rcor=14; rNcor=32; rlogoDP=51; rNIcor=67; rNsEucl=23; rSSD=13; rNSW=17; rank_mean=31.000; match_rank=25 a 0 167 123 575 0 1 13 3 55 5 600 603 0 211 146 0 c 0 140 130 5 3 2 0 607 14 591 4 3 600 141 149 0 g 0 134 195 23 1 2 584 0 95 0 1 2 1 107 154 0 t 0 169 162 7 606 605 13 0 446 14 5 2 9 151 161 0 // ; oligos_7nt_mkv5_m5 versus positions_8nt_m4; m=4/6; ncol2=14; w=12; offset=-1; strand=D; shift=1; score=37.7143; -wtATTGCCCAATaw- ; cor=0.841; Ncor=0.721; logoDP=13.036; NIcor=0.733; NsEucl=0.917; SSD=1.977; NSW=0.918; rcor=40; rNcor=56; rlogoDP=10; rNIcor=25; rNsEucl=56; rSSD=35; rNSW=42; rank_mean=37.714; match_rank=31 a 0 336 249 850 1 1 12 2 35 5 1120 1128 51 410 290 0 c 0 230 213 94 0 1 0 1126 936 1106 4 0 179 261 274 0 g 0 245 259 141 0 1 1114 0 148 5 3 0 78 192 202 0 t 0 317 407 43 1127 1125 2 0 9 12 1 0 820 265 362 0 // ; oligos_7nt_mkv5_m5 versus oligos_8nt_mkv6_m1; m=5/6; ncol2=15; w=12; offset=-2; strand=D; shift=0; score=75.1429; atGGTTGCACAACwh- ; cor=0.768; Ncor=0.614; logoDP=12.304; NIcor=0.606; NsEucl=0.897; SSD=3.055; NSW=0.873; rcor=84; rNcor=94; rlogoDP=17; rNIcor=58; rNsEucl=97; rSSD=80; rNSW=96; rank_mean=75.143; match_rank=86 a 991 446 177 354 1 2 76 3 2057 59 2210 2207 18 1073 570 0 c 349 252 30 55 10 0 3 2211 43 2086 12 4 1847 418 624 0 g 470 340 1759 1769 1 4 2107 4 72 10 1 6 50 136 460 0 t 414 1186 258 46 2212 2218 38 6 52 69 1 7 309 597 570 0 // ; oligos_7nt_mkv5_m5 versus positions_8nt_m3_rc; m=6/6; ncol2=16; w=12; offset=-1; strand=R; shift=1; score=94.5714; -htcTTGCACAATCAy ; cor=0.765; Ncor=0.573; logoDP=0.258; NIcor=-0.195; NsEucl=0.896; SSD=3.089; NSW=0.871; rcor=88; rNcor=98; rlogoDP=99; rNIcor=96; rNsEucl=99; rSSD=84; rNSW=98; rank_mean=94.571; match_rank=98 a 0 163 132 141 2 0 26 4 611 19 636 639 13 23 566 157 c 0 167 107 416 4 0 3 642 7 600 10 1 24 586 25 180 g 0 149 133 72 0 5 594 1 12 4 1 4 13 20 14 133 t 0 169 276 19 642 643 25 1 18 25 1 4 598 19 43 178 // ; ; One-to-n matrix alignment; reference matrix: positions_7nt_m1_shift0 ; 3 matrices ; sort_field=rank_mean ; positions_7nt_m1; m=0 (reference); ncol1=15; shift=0; ncol=16; wtATTTCACAATCwh- ; Alignment reference a 394 220 1355 8 10 132 6 1292 18 1376 1397 18 238 485 355 0 c 279 243 17 9 7 9 1403 26 1344 34 4 64 1058 302 372 0 g 318 341 33 4 46 167 3 48 6 1 7 13 45 157 229 0 t 423 610 9 1393 1351 1106 2 48 46 3 6 1319 73 470 458 0 // ; positions_7nt_m1 versus positions_7nt_m3_rc; m=1/2; ncol2=16; w=15; offset=0; strand=R; shift=0; score= 39; wyATTTCGCAATCTyt ; cor=0.887; Ncor=0.831; logoDP=3.865; NIcor=0.139; NsEucl=0.940; SSD=1.620; NSW=0.946; rcor=20; rNcor=18; rlogoDP=90; rNIcor=82; rNsEucl=19; rSSD=23; rNSW=21; rank_mean=39.000; match_rank=33 a 117 93 410 0 0 18 14 71 4 433 434 3 41 19 84 96 c 76 112 7 1 0 2 366 24 423 1 0 11 351 9 129 99 g 90 102 15 0 10 17 14 303 0 0 0 6 27 4 108 77 t 151 127 2 433 424 397 40 36 7 0 0 414 15 402 113 162 // ; positions_7nt_m1 versus positions_8nt_m3_rc; m=2/2; ncol2=16; w=15; offset=0; strand=R; shift=0; score=59.4286; htcTTGCACAATCAyw ; cor=0.819; Ncor=0.768; logoDP=1.201; NIcor=-0.156; NsEucl=0.924; SSD=2.599; NSW=0.913; rcor=50; rNcor=35; rlogoDP=95; rNIcor=95; rNsEucl=40; rSSD=55; rNSW=46; rank_mean=59.429; match_rank=62 a 163 132 141 2 0 26 4 611 19 636 639 13 23 566 157 174 c 167 107 416 4 0 3 642 7 600 10 1 24 586 25 180 141 g 149 133 72 0 5 594 1 12 4 1 4 13 20 14 133 144 t 169 276 19 642 643 25 1 18 25 1 4 598 19 43 178 189 // ; ; One-to-n matrix alignment; reference matrix: positions_8nt_m2_shift0 ; 2 matrices ; sort_field=rank_mean ; positions_8nt_m2; m=0 (reference); ncol1=14; shift=0; ncol=14; mtGTTGAGCAATmw ; Alignment reference a 161 151 9 2 5 14 446 0 13 605 606 7 162 169 c 154 107 1 2 1 0 95 0 584 2 1 23 195 134 g 149 141 600 3 4 591 14 607 0 2 3 5 130 140 t 146 211 0 603 600 5 55 3 13 1 0 575 123 167 // ; positions_8nt_m2 versus positions_8nt_m4_rc; m=1/1; ncol2=14; w=14; offset=0; strand=R; shift=0; score=44.4286; wtATTGGGCAATaw ; cor=0.812; Ncor=0.812; logoDP=10.850; NIcor=0.672; NsEucl=0.921; SSD=2.453; NSW=0.912; rcor=52; rNcor=25; rlogoDP=49; rNIcor=39; rNsEucl=45; rSSD=51; rNSW=50; rank_mean=44.429; match_rank=38 a 362 265 820 0 1 12 9 0 2 1125 1127 43 407 317 c 202 192 78 0 3 5 148 0 1114 1 0 141 259 245 g 274 261 179 0 4 1106 936 1126 0 1 0 94 213 230 t 290 410 51 1128 1120 5 35 2 12 1 1 850 249 336 // ; ; One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m4_shift1 ; 5 matrices ; sort_field=rank_mean ; oligos_8nt_mkv6_m4; m=0 (reference); ncol1=13; shift=1; ncol=16; -wrTTACACAATah-- ; Alignment reference a 0 714 1247 9 3 2479 2 1960 1 2463 2478 125 915 663 0 0 c 0 367 375 3 0 0 2486 7 2449 4 2 391 571 645 0 0 g 0 555 662 8 10 10 2 516 0 21 8 175 399 404 0 0 t 0 862 214 2478 2485 9 8 15 48 10 10 1807 613 786 0 0 // ; oligos_8nt_mkv6_m4 versus positions_7nt_m1; m=1/4; ncol2=15; w=13; offset=-1; strand=D; shift=0; score=45.5714; wtATTTCACAATCwh- ; cor=0.828; Ncor=0.718; logoDP=10.805; NIcor=0.704; NsEucl=0.919; SSD=2.235; NSW=0.914; rcor=46; rNcor=58; rlogoDP=50; rNIcor=31; rNsEucl=47; rSSD=43; rNSW=44; rank_mean=45.571; match_rank=41 a 394 220 1355 8 10 132 6 1292 18 1376 1397 18 238 485 355 0 c 279 243 17 9 7 9 1403 26 1344 34 4 64 1058 302 372 0 g 318 341 33 4 46 167 3 48 6 1 7 13 45 157 229 0 t 423 610 9 1393 1351 1106 2 48 46 3 6 1319 73 470 458 0 // ; oligos_8nt_mkv6_m4 versus positions_6nt_m2; m=2/4; ncol2=15; w=13; offset=-1; strand=D; shift=0; score= 58; dkATTACGCAAGArw- ; cor=0.797; Ncor=0.691; logoDP=10.468; NIcor=0.662; NsEucl=0.913; SSD=2.559; NSW=0.902; rcor=58; rNcor=69; rlogoDP=56; rNIcor=43; rNsEucl=69; rSSD=53; rNSW=58; rank_mean=58.000; match_rank=58 a 203 157 612 2 1 589 32 68 11 677 677 9 629 179 202 0 c 108 117 23 2 2 3 539 20 645 1 0 57 15 148 142 0 g 175 199 33 1 11 48 27 575 2 0 1 540 14 185 144 0 t 192 205 10 673 664 38 80 15 20 0 0 72 20 166 190 0 // ; oligos_8nt_mkv6_m4 versus positions_6nt_m1_rc; m=3/4; ncol2=15; w=13; offset=0; strand=R; shift=1; score=66.8571; -kaTTTCACAATCTww ; cor=0.816; Ncor=0.707; logoDP=1.948; NIcor=-0.077; NsEucl=0.916; SSD=2.412; NSW=0.907; rcor=51; rNcor=64; rlogoDP=94; rNIcor=94; rNsEucl=62; rSSD=49; rNSW=54; rank_mean=66.857; match_rank=73 a 0 184 544 4 10 88 4 824 6 870 884 5 135 75 249 242 c 0 102 111 6 5 6 889 7 852 17 3 17 694 31 214 173 g 0 243 184 1 31 82 1 40 2 2 5 8 25 20 176 124 t 0 368 58 886 851 721 3 26 37 8 5 867 43 771 258 358 // ; oligos_8nt_mkv6_m4 versus positions_8nt_m3_rc; m=4/4; ncol2=16; w=13; offset=-1; strand=R; shift=0; score=96.4286; htcTTGCACAATCAyw ; cor=0.754; Ncor=0.613; logoDP=0.498; NIcor=-0.210; NsEucl=0.900; SSD=3.355; NSW=0.871; rcor=96; rNcor=95; rlogoDP=98; rNIcor=98; rNsEucl=94; rSSD=95; rNSW=99; rank_mean=96.429; match_rank=99 a 163 132 141 2 0 26 4 611 19 636 639 13 23 566 157 174 c 167 107 416 4 0 3 642 7 600 10 1 24 586 25 180 141 g 149 133 72 0 5 594 1 12 4 1 4 13 20 14 133 144 t 169 276 19 642 643 25 1 18 25 1 4 598 19 43 178 189 // ; ; One-to-n matrix alignment; reference matrix: positions_7nt_m3_shift0 ; 2 matrices ; sort_field=rank_mean ; positions_7nt_m3; m=0 (reference); ncol1=16; shift=0; ncol=16; arAGATTGCGAAATrw ; Alignment reference a 162 113 402 15 414 0 0 7 36 40 397 424 433 2 127 151 c 77 108 4 27 6 0 0 0 303 14 17 10 0 15 102 90 g 99 129 9 351 11 0 1 423 24 366 2 0 1 7 112 76 t 96 84 19 41 3 434 433 4 71 14 18 0 0 410 93 117 // ; positions_7nt_m3 versus positions_8nt_m1; m=1/1; ncol2=16; w=16; offset=0; strand=D; shift=0; score=47.7143; amAGATTGCAAAACww ; cor=0.791; Ncor=0.791; logoDP=11.242; NIcor=0.780; NsEucl=0.923; SSD=3.073; NSW=0.904; rcor=67; rNcor=31; rlogoDP=40; rNIcor=16; rNsEucl=41; rSSD=83; rNSW=56; rank_mean=47.714; match_rank=43 a 173 182 485 53 502 2 2 12 3 522 456 527 540 8 217 164 c 113 162 5 27 15 3 0 2 544 6 70 25 3 483 124 121 g 134 133 23 442 22 2 2 523 5 15 2 2 7 23 44 128 t 134 77 41 32 15 547 550 17 2 11 26 0 4 40 169 141 // ; ; One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m2_shift6 ; 2 matrices ; sort_field=rank_mean ; oligos_6nt_mkv4_m2; m=0 (reference); ncol1=10; shift=6; ncol=16; ------waCAAAACwa ; Alignment reference a 0 0 0 0 0 0 3789 3782 0 9991 9991 9991 9991 0 4608 3524 c 0 0 0 0 0 0 1446 1847 9991 0 0 0 0 9991 2039 2075 g 0 0 0 0 0 0 1693 1936 0 0 0 0 0 0 531 1897 t 0 0 0 0 0 0 3063 2426 0 0 0 0 0 0 2813 2495 // ; oligos_6nt_mkv4_m2 versus positions_8nt_m1; m=1/1; ncol2=16; w=10; offset=-6; strand=D; shift=0; score=58.8571; amAGATTGCAAAACww ; cor=0.845; Ncor=0.528; logoDP=8.446; NIcor=0.506; NsEucl=0.913; SSD=1.523; NSW=0.924; rcor=38; rNcor=100; rlogoDP=74; rNIcor=70; rNsEucl=70; rSSD=21; rNSW=39; rank_mean=58.857; match_rank=59 a 173 182 485 53 502 2 2 12 3 522 456 527 540 8 217 164 c 113 162 5 27 15 3 0 2 544 6 70 25 3 483 124 121 g 134 133 23 442 22 2 2 523 5 15 2 2 7 23 44 128 t 134 77 41 32 15 547 550 17 2 11 26 0 4 40 169 141 // ; ; One-to-n matrix alignment; reference matrix: positions_6nt_m4_shift0 ; 2 matrices ; sort_field=rank_mean ; positions_6nt_m4; m=0 (reference); ncol1=18; shift=0; ncol=18; wvATGTTGCACAACAGtr ; Alignment reference a 39 30 88 5 6 0 1 4 2 116 3 119 118 2 107 5 21 32 c 22 32 17 2 4 0 0 0 115 0 111 0 0 111 2 8 26 29 g 28 31 7 0 107 0 0 111 1 0 1 0 0 3 2 100 25 34 t 30 26 7 112 2 119 118 4 1 3 4 0 1 3 8 6 47 24 // ; positions_6nt_m4 versus positions_7nt_m5; m=1/1; ncol2=17; w=17; offset=0; strand=D; shift=0; score=60.2857; wyCTCTTGCACAACTbh- ; cor=0.762; Ncor=0.720; logoDP=14.216; NIcor=0.718; NsEucl=0.916; SSD=4.040; NSW=0.881; rcor=90; rNcor=57; rlogoDP=2; rNIcor=28; rNsEucl=59; rSSD=100; rNSW=86; rank_mean=60.286; match_rank=63 a 53 47 13 1 20 0 1 2 0 181 11 196 198 3 6 36 50 0 c 42 60 160 8 161 0 0 0 199 8 186 2 1 179 15 54 54 0 g 46 38 9 0 18 0 1 190 1 3 1 1 0 3 4 54 25 0 t 59 55 18 191 1 200 198 8 0 8 2 1 1 15 175 56 71 0 // ; ; One-to-n matrix alignment; reference matrix: positions_8nt_m3_shift0 ; 2 matrices ; sort_field=rank_mean ; positions_8nt_m3; m=0 (reference); ncol1=16; shift=0; ncol=16; wrTGATTGTGCAAgad ; Alignment reference a 189 178 43 19 598 4 1 25 18 1 25 643 642 19 276 169 c 144 133 14 20 13 4 1 4 12 1 594 5 0 72 133 149 g 141 180 25 586 24 1 10 600 7 642 3 0 4 416 107 167 t 174 157 566 23 13 639 636 19 611 4 26 0 2 141 132 163 // ; positions_8nt_m3 versus positions_8nt_m4_rc; m=1/1; ncol2=14; w=14; offset=2; strand=R; shift=2; score=80.1429; --wtATTGGGCAATaw ; cor=0.761; Ncor=0.666; logoDP=10.168; NIcor=0.548; NsEucl=0.908; SSD=3.328; NSW=0.881; rcor=91; rNcor=80; rlogoDP=62; rNIcor=66; rNsEucl=81; rSSD=94; rNSW=87; rank_mean=80.143; match_rank=94 a 0 0 362 265 820 0 1 12 9 0 2 1125 1127 43 407 317 c 0 0 202 192 78 0 3 5 148 0 1114 1 0 141 259 245 g 0 0 274 261 179 0 4 1106 936 1126 0 1 0 94 213 230 t 0 0 290 410 51 1128 1120 5 35 2 12 1 1 850 249 336 // ; ; One-to-n matrix alignment; reference matrix: positions_8nt_m1_shift0 ; 2 matrices ; sort_field=rank_mean ; positions_8nt_m1; m=0 (reference); ncol1=16; shift=0; ncol=16; amAGATTGCAAAACww ; Alignment reference a 173 182 485 53 502 2 2 12 3 522 456 527 540 8 217 164 c 113 162 5 27 15 3 0 2 544 6 70 25 3 483 124 121 g 134 133 23 442 22 2 2 523 5 15 2 2 7 23 44 128 t 134 77 41 32 15 547 550 17 2 11 26 0 4 40 169 141 // ; positions_8nt_m1 versus positions_8nt_m2_rc; m=1/1; ncol2=14; w=14; offset=2; strand=R; shift=2; score= 86; --wkATTGCTCAACak ; cor=0.754; Ncor=0.660; logoDP=8.168; NIcor=0.329; NsEucl=0.906; SSD=3.459; NSW=0.876; rcor=95; rNcor=82; rlogoDP=75; rNIcor=77; rNsEucl=84; rSSD=96; rNSW=93; rank_mean=86.000; match_rank=97 a 0 0 167 123 575 0 1 13 3 55 5 600 603 0 211 146 c 0 0 140 130 5 3 2 0 607 14 591 4 3 600 141 149 g 0 0 134 195 23 1 2 584 0 95 0 1 2 1 107 154 t 0 0 169 162 7 606 605 13 0 446 14 5 2 9 151 161 // ;