; pattern-assembly -v 1 -i $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm.asmb ; Input file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5.tab ; Output file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm.asmb ; Input score column 8 ; Output score column 0 ; Strand-insensitive assembly ; Max flanking bases 1 ; Max substitutions 1 ; Min matches 0 ; Min weight 0 ; Max assembly size 50 ; Max assembly width 20 ; Top number of patterns 100 ; Number of input patterns 100 ; ; assembly # 1 seed: tgcacaa 5 assembled patterns length 11 ; alignt rev_cpl score attgcac.... ....gtgcaat 37.81 .ttgcaca... ...tgtgcaa. 122.63 ..tgcacaa.. ..ttgtgca.. 245.31 ...gcacaat. .attgtgc... 23.65 ....cacaatc gattgtg.... 21.56 attgcacaatc gattgtgcaat 245.31 best consensus ; assembly # 2 seed: attttta 2 assembled patterns length 8 ; alignt rev_cpl score attttta. .taaaaat 141.90 .tttttaa ttaaaaa. 36.01 atttttaa ttaaaaat 141.90 best consensus ; assembly # 3 seed: tacacaa 3 assembled patterns length 9 ; alignt rev_cpl score ttacaca.. ..tgtgtaa 21.24 .tacacaa. .ttgtgta. 125.31 ..acacaaa tttgtgt.. 12.37 ttacacaaa tttgtgtaa 125.31 best consensus ; assembly # 4 seed: caaaaac 2 assembled patterns length 8 ; alignt rev_cpl score acaaaaa. .tttttgt 16.58 .caaaaac gtttttg. 104.39 acaaaaac gtttttgt 104.39 best consensus ; assembly # 5 seed: tgctcaa 2 assembled patterns length 8 ; alignt rev_cpl score ttgctca. .tgagcaa 67.25 .tgctcaa ttgagca. 95.49 ttgctcaa ttgagcaa 95.49 best consensus ; Maximal number of assemblies is reached (5). Remaining patterns: 85. ; Host name rsat ; Job started 2014-09-03.095201 ; Job done 2014-09-03.095208 ; Seconds 6.55 ; user 6.55 ; system 0.01 ; cuser 0 ; csystem 0