; pattern-assembly -v 1 -i $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm.asmb
; Input file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5.tab
; Output file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm.asmb
; Input score column 8
; Output score column 0
; Strand-insensitive assembly
; Max flanking bases 1
; Max substitutions 1
; Min matches 0
; Min weight 0
; Max assembly size 50
; Max assembly width 20
; Top number of patterns 100
; Number of input patterns 100
;
; assembly # 1 seed: tgcacaa 5 assembled patterns length 11
; alignt rev_cpl score
attgcac.... ....gtgcaat 37.81
.ttgcaca... ...tgtgcaa. 122.63
..tgcacaa.. ..ttgtgca.. 245.31
...gcacaat. .attgtgc... 23.65
....cacaatc gattgtg.... 21.56
attgcacaatc gattgtgcaat 245.31 best consensus
; assembly # 2 seed: attttta 2 assembled patterns length 8
; alignt rev_cpl score
attttta. .taaaaat 141.90
.tttttaa ttaaaaa. 36.01
atttttaa ttaaaaat 141.90 best consensus
; assembly # 3 seed: tacacaa 3 assembled patterns length 9
; alignt rev_cpl score
ttacaca.. ..tgtgtaa 21.24
.tacacaa. .ttgtgta. 125.31
..acacaaa tttgtgt.. 12.37
ttacacaaa tttgtgtaa 125.31 best consensus
; assembly # 4 seed: caaaaac 2 assembled patterns length 8
; alignt rev_cpl score
acaaaaa. .tttttgt 16.58
.caaaaac gtttttg. 104.39
acaaaaac gtttttgt 104.39 best consensus
; assembly # 5 seed: tgctcaa 2 assembled patterns length 8
; alignt rev_cpl score
ttgctca. .tgagcaa 67.25
.tgctcaa ttgagca. 95.49
ttgctcaa ttgagcaa 95.49 best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 85.
; Host name rsat
; Job started 2014-09-03.095201
; Job done 2014-09-03.095208
; Seconds 6.55
; user 6.55
; system 0.01
; cuser 0
; csystem 0