; pattern-assembly -v 1 -i $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm.asmb
; Input file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab
; Output file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm.asmb
; Input score column 9
; Output score column 0
; Strand-insensitive assembly
; Max flanking bases 1
; Max substitutions 1
; Min matches 0
; Min weight 0
; Max assembly size 50
; Max assembly width 20
; Top number of patterns 100
; Number of input patterns 100
;
; assembly # 1 seed: tgtgaa 6 assembled patterns length 11
; alignt rev_cpl score
agattg..... .....caatct 300
.gattgt.... ....acaatc. 300
..attgtg... ...cacaat.. 300
...ttgtga.. ..tcacaa... 300
....tgtgaa. .ttcaca.... 300
.....gtgaaa tttcac..... 300
agattgtgaaa tttcacaatct 300 best consensus
; assembly # 2 seed: cgcaag 6 assembled patterns length 11
; alignt rev_cpl score
attacg..... .....cgtaat 300
.ttacgc.... ....gcgtaa. 300
..tacgca... ...tgcgta.. 300
...acgcaa.. ..ttgcgt... 300
....cgcaag. .cttgcg.... 300
.....gcaaga tcttgc..... 300
attacgcaaga tcttgcgtaat 300 best consensus
; assembly # 3 seed: ttgcaa 4 assembled patterns length 9
; alignt rev_cpl score
agttgc... ...gcaact 300
.gttgca.. ..tgcaac. 300
..ttgcaa. .ttgcaa.. 300
...tgcaaa tttgca... 300
agttgcaaa tttgcaact 300 best consensus
; assembly # 4 seed: atgttg 9 assembled patterns length 14
; alignt rev_cpl score
atgttg........ ........caacat 300
.tgttgc....... .......gcaaca. 300
..gttgca...... ......tgcaac.. 300
...ttgcac..... .....gtgcaa... 300
....tgcaca.... ....tgtgca.... 300
.....gcacaa... ...ttgtgc..... 300
......cacaac.. ..gttgtg...... 300
.......acaaca. .tgttgt....... 54.27
........caacag ctgttg........ 300
atgttgcacaacag ctgttgtgcaacat 300 best consensus
; assembly # 5 seed: ataaat 15 assembled patterns length 20
; alignt rev_cpl score
ttttct.............. ..............agaaaa 300
.tttctt............. .............aagaaa. 56.98
..ttcttt............ ............aaagaa.. 62.76
...tctttt........... ...........aaaaga... 300
....cttttt.......... ..........aaaaag.... 300
.....tttttt......... .........aaaaaa..... 300
......ttttta........ ........taaaaa...... 300
.......ttttaa....... .......ttaaaa....... 300
........tttaaa...... ......tttaaa........ 300
.........ttaaaa..... .....ttttaa......... 300
..........taaaat.... ....atttta.......... 300
...........aaaata... ...tatttt........... 300
............aaataa.. ..ttattt............ 300
.............aataaa. .tttatt............. 300
..............ataaat atttat.............. 300
ttttcttttttaaaataaat atttattttaaaaaagaaaa 300 best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 61.
; Host name rsat
; Job started 2014-09-03.095815
; Job done 2014-09-03.095827
; Seconds 11.86
; user 11.86
; system 0.01
; cuser 0
; csystem 0