; pattern-assembly -v 1 -i $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm.asmb ; Input file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab ; Output file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm.asmb ; Input score column 9 ; Output score column 0 ; Strand-insensitive assembly ; Max flanking bases 1 ; Max substitutions 1 ; Min matches 0 ; Min weight 0 ; Max assembly size 50 ; Max assembly width 20 ; Top number of patterns 100 ; Number of input patterns 100 ; ; assembly # 1 seed: ttcacaa 5 assembled patterns length 11 ; alignt rev_cpl score atttcac.... ....gtgaaat 300 .tttcaca... ...tgtgaaa. 300 ..ttcacaa.. ..ttgtgaa.. 300 ...tcacaat. .attgtga... 300 ....cacaatc gattgtg.... 300 atttcacaatc gattgtgaaat 300 best consensus ; assembly # 2 seed: attgcac 7 assembled patterns length 13 ; alignt rev_cpl score agattgc...... ......gcaatct 300 .gattgca..... .....tgcaatc. 300 ..attgcac.... ....gtgcaat.. 300 ...ttgcaca... ...tgtgcaa... 300 ....tgcacaa.. ..ttgtgca.... 300 .....gcacaac. .gttgtgc..... 300 ......cacaact agttgtg...... 300 agattgcacaact agttgtgcaatct 300 best consensus ; assembly # 3 seed: tgcgaaa 6 assembled patterns length 12 ; alignt rev_cpl score agattgc..... .....gcaatct 300 .gattgcg.... ....cgcaatc. 300 ..attgcga... ...tcgcaat.. 300 ...ttgcgaa.. ..ttcgcaa... 300 ....tgcgaaa. .tttcgca.... 300 .....gcgaaat atttcgc..... 69.42 agattgcgaaat atttcgcaatct 300 best consensus ; assembly # 4 seed: gcaacca 6 assembled patterns length 12 ; alignt rev_cpl score atgatgc..... .....gcatcat 71.71 .tgatgca.... ....tgcatca. 300 ..gatgcaa... ...ttgcatc.. 300 ...atgcaac.. ..gttgcat... 300 ....tgcaacc. .ggttgca.... 300 .....gcaacca tggttgc..... 300 atgatgcaacca tggttgcatcat 300 best consensus ; assembly # 5 seed: tcttgca 7 assembled patterns length 13 ; alignt rev_cpl score ctcttgc...... ......gcaagag 58.76 .tcttgca..... .....tgcaaga. 300 ..cttgcac.... ....gtgcaag.. 65.01 ...ttgcaca... ...tgtgcaa... 300 ....tgcacaa.. ..ttgtgca.... 300 .....gcacaac. .gttgtgc..... 300 ......cacaact agttgtg...... 300 ctcttgcacaact agttgtgcaagag 300 best consensus ; Maximal number of assemblies is reached (5). Remaining patterns: 73. ; Host name rsat ; Job started 2014-09-03.100349 ; Job done 2014-09-03.100358 ; Seconds 9.01 ; user 9.01 ; system 0.01 ; cuser 0 ; csystem 0