; pattern-assembly -v 1 -i $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm.asmb
; Input file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab
; Output file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.094519_2014-09-03.094519_gM9GBj/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm.asmb
; Input score column 9
; Output score column 0
; Strand-insensitive assembly
; Max flanking bases 1
; Max substitutions 1
; Min matches 0
; Min weight 0
; Max assembly size 50
; Max assembly width 20
; Top number of patterns 100
; Number of input patterns 100
;
; assembly # 1 seed: ttcacaa 5 assembled patterns length 11
; alignt rev_cpl score
atttcac.... ....gtgaaat 300
.tttcaca... ...tgtgaaa. 300
..ttcacaa.. ..ttgtgaa.. 300
...tcacaat. .attgtga... 300
....cacaatc gattgtg.... 300
atttcacaatc gattgtgaaat 300 best consensus
; assembly # 2 seed: attgcac 7 assembled patterns length 13
; alignt rev_cpl score
agattgc...... ......gcaatct 300
.gattgca..... .....tgcaatc. 300
..attgcac.... ....gtgcaat.. 300
...ttgcaca... ...tgtgcaa... 300
....tgcacaa.. ..ttgtgca.... 300
.....gcacaac. .gttgtgc..... 300
......cacaact agttgtg...... 300
agattgcacaact agttgtgcaatct 300 best consensus
; assembly # 3 seed: tgcgaaa 6 assembled patterns length 12
; alignt rev_cpl score
agattgc..... .....gcaatct 300
.gattgcg.... ....cgcaatc. 300
..attgcga... ...tcgcaat.. 300
...ttgcgaa.. ..ttcgcaa... 300
....tgcgaaa. .tttcgca.... 300
.....gcgaaat atttcgc..... 69.42
agattgcgaaat atttcgcaatct 300 best consensus
; assembly # 4 seed: gcaacca 6 assembled patterns length 12
; alignt rev_cpl score
atgatgc..... .....gcatcat 71.71
.tgatgca.... ....tgcatca. 300
..gatgcaa... ...ttgcatc.. 300
...atgcaac.. ..gttgcat... 300
....tgcaacc. .ggttgca.... 300
.....gcaacca tggttgc..... 300
atgatgcaacca tggttgcatcat 300 best consensus
; assembly # 5 seed: tcttgca 7 assembled patterns length 13
; alignt rev_cpl score
ctcttgc...... ......gcaagag 58.76
.tcttgca..... .....tgcaaga. 300
..cttgcac.... ....gtgcaag.. 65.01
...ttgcaca... ...tgtgcaa... 300
....tgcacaa.. ..ttgtgca.... 300
.....gcacaac. .gttgtgc..... 300
......cacaact agttgtg...... 300
ctcttgcacaact agttgtgcaagag 300 best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 73.
; Host name rsat
; Job started 2014-09-03.100349
; Job done 2014-09-03.100358
; Seconds 9.01
; user 9.01
; system 0.01
; cuser 0
; csystem 0