; One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m4_shift0 ; 4 matrices ; sort_field=rank_mean ; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=13; shift=0; ncol=14; ttTTCTTTTCTtt- ; Alignment reference a 284 285 145 199 3 0 6 8 4 1 7 298 281 0 c 250 209 51 47 1336 0 0 0 1 1338 14 258 292 0 g 215 182 43 30 0 11 1 0 0 0 46 236 177 0 t 590 663 1100 1063 0 1328 1332 1331 1334 0 1272 547 589 0 // ; oligos_6nt_mkv4_m4 versus MA0035.3 (Gata1); m=1/3; ncol2=11; w=11; offset=2; strand=D; shift=2; score= 1.4286; --tyCTTATCTsy- ; cor=0.767; Ncor=0.649; logoDP=9.313; NIcor=0.658; NsEucl=0.896; SSD=2.612; NSW=0.881; rcor=2; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=1; rSSD=3; rNSW=1; rank_mean=1.429; match_rank=1 a 0 0 2035 506 0 0 0 17955 0 0 2166 2502 1886 0 c 0 0 4321 6406 14869 697 0 0 0 17955 0 6166 5072 0 g 0 0 2530 2792 437 0 0 0 0 0 0 6687 1598 0 t 0 0 9069 8251 2649 17258 17955 0 17955 0 15789 2600 9399 0 // ; oligos_6nt_mkv4_m4 versus MA0482.1 (Gata4); m=2/3; ncol2=11; w=10; offset=3; strand=D; shift=3; score= 2.1429; ---yCTTATCTsyy ; cor=0.757; Ncor=0.541; logoDP=8.933; NIcor=0.552; NsEucl=0.887; SSD=2.546; NSW=0.873; rcor=3; rNcor=2; rlogoDP=2; rNIcor=2; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=2.143; match_rank=2 a 0 0 0 10 0 0 0 2707 0 0 547 0 601 386 c 0 0 0 1039 2165 89 0 39 0 2746 0 1240 1004 929 g 0 0 0 374 306 0 0 0 0 0 0 940 157 682 t 0 0 0 1323 275 2657 2746 0 2746 0 2199 566 984 749 // ; oligos_6nt_mkv4_m4 versus MA0037.2_rc (GATA3_rc); m=3/3; ncol2=8; w=8; offset=3; strand=R; shift=3; score= 2.4286; ---tYTTATCT--- ; cor=0.787; Ncor=0.484; logoDP=2.035; NIcor=-0.076; NsEucl=0.867; SSD=2.253; NSW=0.859; rcor=1; rNcor=3; rlogoDP=3; rNIcor=3; rNsEucl=3; rSSD=1; rNSW=3; rank_mean=2.429; match_rank=3 a 0 0 0 0 0 0 0 4628 0 0 0 0 0 0 c 0 0 0 1120 3338 0 0 0 0 4628 0 0 0 0 g 0 0 0 712 0 0 0 0 0 0 0 0 0 0 t 0 0 0 2796 1290 4628 4628 0 4628 0 4628 0 0 0 // ;