Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_8nt_mkv6_m1_shift0 (oligos_8nt_mkv6_m1) |
|
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; oligos_8nt_mkv6_m1; m=0 (reference); ncol1=15; shift=0; ncol=16; atGGTTGCACAATah-
; Alignment reference
a 916 519 193 371 2 4 54 1 2146 57 2247 2242 18 885 631 0
c 427 233 24 77 4 0 3 2252 32 2134 18 4 475 510 578 0
g 477 406 1804 1760 2 8 2128 5 32 14 0 14 49 354 370 0
t 447 1109 246 59 2259 2255 82 9 57 62 2 7 1725 518 688 0
|
MA0102.3_shift3 (CEBPA) |
|
0.905 |
0.664 |
9.835 |
0.645 |
0.931 |
1.166 |
0.947 |
1 |
1 |
1 |
1 |
1 |
2 |
1 |
1.143 |
1 |
; oligos_8nt_mkv6_m1 versus MA0102.3 (CEBPA); m=1/6; ncol2=11; w=11; offset=3; strand=D; shift=3; score= 1.1429; ---aTTGCAyAAym--
; cor=0.905; Ncor=0.664; logoDP=9.835; NIcor=0.645; NsEucl=0.931; SSD=1.166; NSW=0.947; rcor=1; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=1; rSSD=2; rNSW=1; rank_mean=1.143; match_rank=1
a 0 0 0 10351 0 0 705 0 11956 2660 12226 15318 0 5804 0 0
c 0 0 0 1332 0 0 0 15318 1274 7654 3092 0 5688 4963 0 0
g 0 0 0 3635 0 0 11304 0 1066 0 0 0 1804 890 0 0
t 0 0 0 0 15318 15318 3309 0 1022 5004 0 0 7826 3661 0 0
|
MA0466.1_shift2 (CEBPB) |
|
0.857 |
0.629 |
9.666 |
0.600 |
0.914 |
1.791 |
0.919 |
2 |
2 |
2 |
2 |
2 |
3 |
3 |
2.286 |
2 |
; oligos_8nt_mkv6_m1 versus MA0466.1 (CEBPB); m=2/6; ncol2=11; w=11; offset=2; strand=D; shift=2; score= 2.2857; --kATTGCAymAy---
; cor=0.857; Ncor=0.629; logoDP=9.666; NIcor=0.600; NsEucl=0.914; SSD=1.791; NSW=0.919; rcor=2; rNcor=2; rlogoDP=2; rNIcor=2; rNsEucl=2; rSSD=3; rNSW=3; rank_mean=2.286; match_rank=2
a 0 0 13006 75198 0 0 4556 0 74715 8654 60151 99494 0 0 0 0
c 0 0 10026 5868 0 0 0 99494 5478 51954 39343 0 36038 0 0 0
g 0 0 33617 18428 0 0 75531 0 10015 0 0 0 2043 0 0 0
t 0 0 42845 0 99494 99494 19407 0 9286 38886 0 0 61413 0 0 0
|
MA0078.1_rc_shift7 (Sox17_rc) |
|
0.854 |
0.427 |
2.638 |
0.134 |
0.906 |
1.140 |
0.929 |
3 |
6 |
5 |
5 |
3 |
1 |
2 |
3.571 |
3 |
; oligos_8nt_mkv6_m1 versus MA0078.1_rc (Sox17_rc); m=3/6; ncol2=9; w=8; offset=7; strand=R; shift=7; score= 3.5714; -------sACAATrdr
; cor=0.854; Ncor=0.427; logoDP=2.638; NIcor=0.134; NsEucl=0.906; SSD=1.140; NSW=0.929; rcor=3; rNcor=6; rlogoDP=5; rNIcor=5; rNsEucl=3; rSSD=1; rNSW=2; rank_mean=3.571; match_rank=3
a 0 0 0 0 0 0 0 4 29 0 31 30 1 9 11 9
c 0 0 0 0 0 0 0 10 2 31 0 0 0 1 4 6
g 0 0 0 0 0 0 0 17 0 0 0 1 0 18 8 9
t 0 0 0 0 0 0 0 0 0 0 0 0 30 3 8 7
|
MA0102.2_shift4 (CEBPA) |
|
0.819 |
0.492 |
6.238 |
0.466 |
0.889 |
2.012 |
0.888 |
4 |
5 |
3 |
4 |
6 |
4 |
5 |
4.429 |
4 |
; oligos_8nt_mkv6_m1 versus MA0102.2 (CEBPA); m=4/6; ncol2=9; w=9; offset=4; strand=D; shift=4; score= 4.4286; ----TtkygCAAy---
; cor=0.819; Ncor=0.492; logoDP=6.238; NIcor=0.466; NsEucl=0.889; SSD=2.012; NSW=0.888; rcor=4; rNcor=5; rlogoDP=3; rNIcor=4; rNsEucl=6; rSSD=4; rNSW=5; rank_mean=4.429; match_rank=4
a 0 0 0 0 3 1 4 2 4 2 18 18 0 0 0 0
c 0 0 0 0 0 1 1 9 2 15 0 0 6 0 0 0
g 0 0 0 0 0 4 6 2 10 0 0 0 2 0 0 0
t 0 0 0 0 15 12 7 5 2 1 0 0 10 0 0 0
|
MA0102.1_rc_shift0 (Cebpa_rc) |
|
0.771 |
0.617 |
0.293 |
-0.165 |
0.904 |
2.655 |
0.889 |
5 |
3 |
6 |
6 |
4 |
5 |
4 |
4.714 |
5 |
; oligos_8nt_mkv6_m1 versus MA0102.1_rc (Cebpa_rc); m=5/6; ncol2=12; w=12; offset=0; strand=R; shift=0; score= 4.7143; vrbrTTGcrmaA----
; cor=0.771; Ncor=0.617; logoDP=0.293; NIcor=-0.165; NsEucl=0.904; SSD=2.655; NSW=0.889; rcor=5; rNcor=3; rlogoDP=6; rNIcor=6; rNsEucl=4; rSSD=5; rNSW=4; rank_mean=4.714; match_rank=5
a 6 8 2 10 0 0 1 2 5 7 12 15 0 0 0 0
c 5 3 5 2 0 0 0 10 2 6 4 0 0 0 0 0
g 6 5 6 6 0 0 15 2 9 1 1 0 0 0 0 0
t 1 2 5 0 18 18 2 4 2 4 1 3 0 0 0 0
|
MA0043.1_shift2 (HLF) |
|
0.753 |
0.602 |
6.217 |
0.584 |
0.899 |
2.942 |
0.877 |
6 |
4 |
4 |
3 |
5 |
6 |
6 |
4.857 |
6 |
; oligos_8nt_mkv6_m1 versus MA0043.1 (HLF); m=6/6; ncol2=12; w=12; offset=2; strand=D; shift=2; score= 4.8571; --krTTACryAAth--
; cor=0.753; Ncor=0.602; logoDP=6.217; NIcor=0.584; NsEucl=0.899; SSD=2.942; NSW=0.877; rcor=6; rNcor=4; rlogoDP=4; rNIcor=3; rNsEucl=5; rSSD=6; rNSW=6; rank_mean=4.857; match_rank=6
a 0 0 1 6 1 0 13 0 6 0 13 15 2 5 0 0
c 0 0 4 0 0 0 1 15 0 9 4 0 3 5 0 0
g 0 0 8 12 0 3 2 1 12 0 1 1 1 3 0 0
t 0 0 5 0 17 15 2 2 0 9 0 2 12 5 0 0
|