; One-to-n matrix alignment; reference matrix: positions_8nt_m1_shift0 ; 5 matrices ; sort_field=rank_mean ; positions_8nt_m1; m=0 (reference); ncol1=16; shift=0; ncol=16; amAGATTGCAAAACww ; Alignment reference a 172 182 482 52 497 2 2 12 3 517 451 522 535 8 215 163 c 112 161 5 27 15 3 0 2 539 6 70 25 3 479 124 119 g 134 132 23 439 22 2 2 518 5 15 2 2 7 22 43 128 t 131 74 39 31 15 542 545 17 2 11 26 0 4 40 167 139 // ; positions_8nt_m1 versus MA0102.3 (CEBPA); m=1/4; ncol2=11; w=11; offset=4; strand=D; shift=4; score= 1.1429; ----aTTGCAyAAym- ; cor=0.888; Ncor=0.610; logoDP=9.440; NIcor=0.600; NsEucl=0.925; SSD=1.358; NSW=0.938; rcor=1; rNcor=2; rlogoDP=1; rNIcor=1; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=1.143; match_rank=1 a 0 0 0 0 10351 0 0 705 0 11956 2660 12226 15318 0 5804 0 c 0 0 0 0 1332 0 0 0 15318 1274 7654 3092 0 5688 4963 0 g 0 0 0 0 3635 0 0 11304 0 1066 0 0 0 1804 890 0 t 0 0 0 0 0 15318 15318 3309 0 1022 5004 0 0 7826 3661 0 // ; positions_8nt_m1 versus MA0102.2_rc (CEBPA_rc); m=2/4; ncol2=9; w=9; offset=4; strand=R; shift=4; score= 2.8571; ----rTTGcrmaA--- ; cor=0.861; Ncor=0.484; logoDP=3.266; NIcor=0.135; NsEucl=0.901; SSD=1.596; NSW=0.911; rcor=2; rNcor=4; rlogoDP=3; rNIcor=3; rNsEucl=4; rSSD=2; rNSW=2; rank_mean=2.857; match_rank=2 a 0 0 0 0 10 0 0 1 2 5 7 12 15 0 0 0 c 0 0 0 0 2 0 0 0 10 2 6 4 0 0 0 0 g 0 0 0 0 6 0 0 15 2 9 1 1 0 0 0 0 t 0 0 0 0 0 18 18 2 4 2 4 1 3 0 0 0 // ; positions_8nt_m1 versus MA0102.1_rc (Cebpa_rc); m=3/4; ncol2=12; w=12; offset=1; strand=R; shift=1; score= 3; -vrbrTTGcrmaA--- ; cor=0.833; Ncor=0.625; logoDP=0.301; NIcor=-0.199; NsEucl=0.913; SSD=2.200; NSW=0.908; rcor=3; rNcor=1; rlogoDP=4; rNIcor=4; rNsEucl=2; rSSD=4; rNSW=3; rank_mean=3.000; match_rank=3 a 0 6 8 2 10 0 0 1 2 5 7 12 15 0 0 0 c 0 5 3 5 2 0 0 0 10 2 6 4 0 0 0 0 g 0 6 5 6 6 0 0 15 2 9 1 1 0 0 0 0 t 0 1 2 5 0 18 18 2 4 2 4 1 3 0 0 0 // ; positions_8nt_m1 versus MA0466.1 (CEBPB); m=4/4; ncol2=11; w=11; offset=3; strand=D; shift=3; score= 3; ---kATTGCAymAy-- ; cor=0.828; Ncor=0.569; logoDP=9.326; NIcor=0.559; NsEucl=0.906; SSD=2.128; NSW=0.903; rcor=4; rNcor=3; rlogoDP=2; rNIcor=2; rNsEucl=3; rSSD=3; rNSW=4; rank_mean=3.000; match_rank=4 a 0 0 0 13006 75198 0 0 4556 0 74715 8654 60151 99494 0 0 0 c 0 0 0 10026 5868 0 0 0 99494 5478 51954 39343 0 36038 0 0 g 0 0 0 33617 18428 0 0 75531 0 10015 0 0 0 2043 0 0 t 0 0 0 42845 0 99494 99494 19407 0 9286 38886 0 0 61413 0 0 // ;