; One-to-n matrix alignment; reference matrix: positions_8nt_m4_shift0 ; 6 matrices ; sort_field=rank_mean ; positions_8nt_m4; m=0 (reference); ncol1=17; shift=0; ncol=17; raTGGTTGCACAAyAwt ; Alignment reference a 176 350 19 19 55 1 1 11 1 634 4 646 645 6 548 174 92 c 61 81 8 2 8 0 0 2 643 3 635 1 0 239 29 149 112 g 352 112 19 612 578 0 0 628 0 5 1 0 0 12 34 147 50 t 58 104 601 14 6 646 646 6 3 5 7 0 2 390 36 177 393 // ; positions_8nt_m4 versus MA0102.3 (CEBPA); m=1/5; ncol2=11; w=11; offset=4; strand=D; shift=4; score= 1; ----aTTGCAyAAym-- ; cor=0.872; Ncor=0.564; logoDP=10.262; NIcor=0.542; NsEucl=0.916; SSD=1.725; NSW=0.922; rcor=1; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=1.000; match_rank=1 a 0 0 0 0 10351 0 0 705 0 11956 2660 12226 15318 0 5804 0 0 c 0 0 0 0 1332 0 0 0 15318 1274 7654 3092 0 5688 4963 0 0 g 0 0 0 0 3635 0 0 11304 0 1066 0 0 0 1804 890 0 0 t 0 0 0 0 0 15318 15318 3309 0 1022 5004 0 0 7826 3661 0 0 // ; positions_8nt_m4 versus MA0466.1 (CEBPB); m=2/5; ncol2=11; w=11; offset=3; strand=D; shift=3; score= 2.8571; ---kATTGCAymAy--- ; cor=0.825; Ncor=0.534; logoDP=10.032; NIcor=0.501; NsEucl=0.902; SSD=2.334; NSW=0.894; rcor=2; rNcor=3; rlogoDP=2; rNIcor=3; rNsEucl=3; rSSD=4; rNSW=3; rank_mean=2.857; match_rank=2 a 0 0 0 13006 75198 0 0 4556 0 74715 8654 60151 99494 0 0 0 0 c 0 0 0 10026 5868 0 0 0 99494 5478 51954 39343 0 36038 0 0 0 g 0 0 0 33617 18428 0 0 75531 0 10015 0 0 0 2043 0 0 0 t 0 0 0 42845 0 99494 99494 19407 0 9286 38886 0 0 61413 0 0 0 // ; positions_8nt_m4 versus MA0102.1 (Cebpa); m=3/5; ncol2=12; w=12; offset=5; strand=D; shift=5; score= 3.2857; -----TtkygCAAyvyb ; cor=0.771; Ncor=0.544; logoDP=6.562; NIcor=0.521; NsEucl=0.902; SSD=2.771; NSW=0.885; rcor=5; rNcor=2; rlogoDP=3; rNIcor=2; rNsEucl=2; rSSD=5; rNSW=4; rank_mean=3.286; match_rank=3 a 0 0 0 0 0 3 1 4 2 4 2 18 18 0 5 2 1 c 0 0 0 0 0 0 1 1 9 2 15 0 0 6 6 5 6 g 0 0 0 0 0 0 4 6 2 10 0 0 0 2 5 3 5 t 0 0 0 0 0 15 12 7 5 2 1 0 0 10 2 8 6 // ; positions_8nt_m4 versus MA0078.1_rc (Sox17_rc); m=4/5; ncol2=9; w=9; offset=8; strand=R; shift=8; score= 3.8571; --------sACAATrdr ; cor=0.781; Ncor=0.414; logoDP=2.538; NIcor=0.089; NsEucl=0.893; SSD=1.869; NSW=0.896; rcor=4; rNcor=5; rlogoDP=5; rNIcor=5; rNsEucl=4; rSSD=2; rNSW=2; rank_mean=3.857; match_rank=4 a 0 0 0 0 0 0 0 0 4 29 0 31 30 1 9 11 9 c 0 0 0 0 0 0 0 0 10 2 31 0 0 0 1 4 6 g 0 0 0 0 0 0 0 0 17 0 0 0 1 0 18 8 9 t 0 0 0 0 0 0 0 0 0 0 0 0 0 30 3 8 7 // ; positions_8nt_m4 versus MA0102.2 (CEBPA); m=5/5; ncol2=9; w=9; offset=5; strand=D; shift=5; score= 4; -----TtkygCAAy--- ; cor=0.815; Ncor=0.431; logoDP=6.536; NIcor=0.408; NsEucl=0.886; SSD=2.101; NSW=0.883; rcor=3; rNcor=4; rlogoDP=4; rNIcor=4; rNsEucl=5; rSSD=3; rNSW=5; rank_mean=4.000; match_rank=5 a 0 0 0 0 0 3 1 4 2 4 2 18 18 0 0 0 0 c 0 0 0 0 0 0 1 1 9 2 15 0 0 6 0 0 0 g 0 0 0 0 0 0 4 6 2 10 0 0 0 2 0 0 0 t 0 0 0 0 0 15 12 7 5 2 1 0 0 10 0 0 0 // ;