; One-to-n matrix alignment; reference matrix: positions_8nt_m5_shift0 ; 4 matrices ; sort_field=rank_mean ; positions_8nt_m5; m=0 (reference); ncol1=17; shift=0; ncol=17; rwATGTTGCAATCATtw ; Alignment reference a 51 42 154 1 0 17 1 1 7 163 165 3 8 146 9 41 46 c 33 31 4 1 2 3 4 1 152 2 0 3 152 7 13 38 40 g 45 38 7 0 155 2 5 164 1 0 0 3 2 3 10 36 34 t 37 55 1 164 9 144 156 0 6 1 1 157 4 10 134 51 46 // ; positions_8nt_m5 versus MA0102.3_rc (CEBPA_rc); m=1/3; ncol2=11; w=11; offset=1; strand=R; shift=1; score= 1.5714; -krTTrTGCAAt----- ; cor=0.798; Ncor=0.516; logoDP=4.406; NIcor=0.116; NsEucl=0.900; SSD=2.401; NSW=0.891; rcor=2; rNcor=2; rlogoDP=2; rNIcor=2; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=1.571; match_rank=1 a 0 3661 7826 0 0 5004 1022 0 3309 15318 15318 0 0 0 0 0 0 c 0 890 1804 0 0 0 1066 0 11304 0 0 3635 0 0 0 0 0 g 0 4963 5688 0 3092 7654 1274 15318 0 0 0 1332 0 0 0 0 0 t 0 5804 0 15318 12226 2660 11956 0 705 0 0 10351 0 0 0 0 0 // ; positions_8nt_m5 versus MA0466.1_rc (CEBPB_rc); m=2/3; ncol2=11; w=11; offset=2; strand=R; shift=2; score= 2; --rTkrTGCAATm---- ; cor=0.814; Ncor=0.526; logoDP=2.312; NIcor=-0.065; NsEucl=0.900; SSD=2.409; NSW=0.891; rcor=1; rNcor=1; rlogoDP=3; rNIcor=3; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=2.000; match_rank=2 a 0 0 61413 0 0 38886 9286 0 19407 99494 99494 0 42845 0 0 0 0 c 0 0 2043 0 0 0 10015 0 75531 0 0 18428 33617 0 0 0 0 g 0 0 36038 0 39343 51954 5478 99494 0 0 0 5868 10026 0 0 0 0 t 0 0 0 99494 60151 8654 74715 0 4556 0 0 75198 13006 0 0 0 0 // ; positions_8nt_m5 versus MA0102.2 (CEBPA); m=3/3; ncol2=9; w=9; offset=3; strand=D; shift=3; score= 2.4286; ---TtkygCAAy----- ; cor=0.761; Ncor=0.403; logoDP=5.949; NIcor=0.375; NsEucl=0.876; SSD=2.497; NSW=0.861; rcor=3; rNcor=3; rlogoDP=1; rNIcor=1; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=2.429; match_rank=3 a 0 0 0 3 1 4 2 4 2 18 18 0 0 0 0 0 0 c 0 0 0 0 1 1 9 2 15 0 0 6 0 0 0 0 0 g 0 0 0 0 4 6 2 10 0 0 0 2 0 0 0 0 0 t 0 0 0 15 12 7 5 2 1 0 0 10 0 0 0 0 0 // ;