One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.182940_2014-09-03.182940_LkVj4M/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.182940_2014-09-03.182940_LkVj4M/peak-motifs_custom_motif_db.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.182940_2014-09-03.182940_LkVj4M/results/discovered_vs_db/peak-motifs_motifs_vs_db_Schmidt_CEBPa_motif.tab
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m1_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| oligos_7nt_mkv5_m1_shift0 (oligos_7nt_mkv5_m1) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=14; shift=0; ncol=14; wkATTGCACAAywh
; Alignment reference
a 1173 857 3161 3 5 52 3 4369 17 4506 4512 149 1831 1226
c 816 719 307 3 4 3 4509 16 4467 9 3 2623 988 1193
g 861 1532 915 4 3 4418 2 107 5 4 3 337 502 930
t 1671 1413 138 4511 4509 48 7 29 32 2 3 1412 1200 1172
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift2 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
 |
0.944 |
0.741 |
9.821 |
0.726 |
0.943 |
0.776 |
0.965 |
1 |
3 |
3 |
3 |
1 |
1 |
1 |
1.857 |
1 |
; oligos_7nt_mkv5_m1 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=2; strand=D; shift=2; score= 1.8571; --rTTGCacMAym-
; cor=0.944; Ncor=0.741; logoDP=9.821; NIcor=0.726; NsEucl=0.943; SSD=0.776; NSW=0.965; rcor=1; rNcor=3; rlogoDP=3; rNIcor=3; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=1.857; match_rank=1
a 0 0 204 0 0 35 0 259 80 300 431 1 143 0
c 0 0 69 0 0 0 431 48 258 130 0 169 145 0
g 0 0 138 0 0 365 0 85 0 0 0 78 60 0
t 0 0 20 431 431 31 0 39 93 1 0 183 83 0
|
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m5_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| oligos_6nt_mkv4_m5_shift0 (oligos_6nt_mkv4_m5) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; oligos_6nt_mkv4_m5; m=0 (reference); ncol1=15; shift=0; ncol=15; atGATTGCACAACwy
; Alignment reference
a 1046 663 145 2141 1 1 72 6 2545 94 2687 2687 42 1152 677
c 471 240 158 56 4 1 6 2698 51 2522 26 10 2208 613 803
g 578 483 2160 474 4 10 2428 2 31 16 1 9 95 166 539
t 620 1329 252 44 2706 2703 209 9 88 83 1 9 370 784 696
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift3 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
 |
0.926 |
0.679 |
9.366 |
0.663 |
0.937 |
0.962 |
0.956 |
2 |
7 |
11 |
6 |
2 |
2 |
2 |
4.571 |
2 |
; oligos_6nt_mkv4_m5 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=3; strand=D; shift=3; score= 4.5714; ---rTTGCacMAym-
; cor=0.926; Ncor=0.679; logoDP=9.366; NIcor=0.663; NsEucl=0.937; SSD=0.962; NSW=0.956; rcor=2; rNcor=7; rlogoDP=11; rNIcor=6; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=4.571; match_rank=2
a 0 0 0 204 0 0 35 0 259 80 300 431 1 143 0
c 0 0 0 69 0 0 0 431 48 258 130 0 169 145 0
g 0 0 0 138 0 0 365 0 85 0 0 0 78 60 0
t 0 0 0 20 431 431 31 0 39 93 1 0 183 83 0
|
One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m1_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| oligos_8nt_mkv6_m1_shift0 (oligos_8nt_mkv6_m1) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; oligos_8nt_mkv6_m1; m=0 (reference); ncol1=15; shift=0; ncol=15; atGGTTGCACAATah
; Alignment reference
a 916 519 193 371 2 4 54 1 2146 57 2247 2242 18 885 631
c 427 233 24 77 4 0 3 2252 32 2134 18 4 475 510 578
g 477 406 1804 1760 2 8 2128 5 32 14 0 14 49 354 370
t 447 1109 246 59 2259 2255 82 9 57 62 2 7 1725 518 688
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift3 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
|
0.919 |
0.674 |
9.466 |
0.657 |
0.934 |
1.042 |
0.953 |
4 |
10 |
9 |
8 |
4 |
4 |
4 |
6.143 |
3 |
; oligos_8nt_mkv6_m1 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=3; strand=D; shift=3; score= 6.1429; ---rTTGCacMAym-
; cor=0.919; Ncor=0.674; logoDP=9.466; NIcor=0.657; NsEucl=0.934; SSD=1.042; NSW=0.953; rcor=4; rNcor=10; rlogoDP=9; rNIcor=8; rNsEucl=4; rSSD=4; rNSW=4; rank_mean=6.143; match_rank=3
a 0 0 0 204 0 0 35 0 259 80 300 431 1 143 0
c 0 0 0 69 0 0 0 431 48 258 130 0 169 145 0
g 0 0 0 138 0 0 365 0 85 0 0 0 78 60 0
t 0 0 0 20 431 431 31 0 39 93 1 0 183 83 0
|
One-to-n matrix alignment; reference matrix: positions_8nt_m3_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| positions_8nt_m3_shift0 (positions_8nt_m3) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; positions_8nt_m3; m=0 (reference); ncol1=14; shift=0; ncol=14; wtATTGCCCAATaw
; Alignment reference
a 331 246 842 1 1 12 2 34 5 1110 1118 50 412 284
c 229 210 94 0 1 0 1116 933 1097 4 0 179 259 273
g 247 258 141 0 1 1104 0 142 4 3 0 80 183 202
t 311 404 41 1117 1115 2 0 9 12 1 0 809 264 359
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift2 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
|
0.866 |
0.680 |
9.744 |
0.677 |
0.919 |
1.582 |
0.928 |
9 |
6 |
5 |
5 |
7 |
7 |
7 |
6.571 |
4 |
; positions_8nt_m3 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=2; strand=D; shift=2; score= 6.5714; --rTTGCacMAym-
; cor=0.866; Ncor=0.680; logoDP=9.744; NIcor=0.677; NsEucl=0.919; SSD=1.582; NSW=0.928; rcor=9; rNcor=6; rlogoDP=5; rNIcor=5; rNsEucl=7; rSSD=7; rNSW=7; rank_mean=6.571; match_rank=4
a 0 0 204 0 0 35 0 259 80 300 431 1 143 0
c 0 0 69 0 0 0 431 48 258 130 0 169 145 0
g 0 0 138 0 0 365 0 85 0 0 0 78 60 0
t 0 0 20 431 431 31 0 39 93 1 0 183 83 0
|
One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m5_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| oligos_8nt_mkv6_m5_shift0 (oligos_8nt_mkv6_m5) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; oligos_8nt_mkv6_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; waTTGCCCAAya
; Alignment reference
a 519 683 0 0 0 0 5 0 1878 1880 230 606
c 405 470 0 0 0 1881 1825 1880 0 1 573 394
g 401 453 0 0 1879 0 50 0 3 0 432 449
t 556 275 1881 1881 2 0 1 1 0 0 646 432
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift1 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
 |
0.848 |
0.777 |
9.811 |
0.775 |
0.917 |
1.686 |
0.923 |
13 |
1 |
4 |
1 |
10 |
10 |
10 |
7.000 |
5 |
; oligos_8nt_mkv6_m5 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=1; strand=D; shift=1; score= 7; -rTTGCacMAym
; cor=0.848; Ncor=0.777; logoDP=9.811; NIcor=0.775; NsEucl=0.917; SSD=1.686; NSW=0.923; rcor=13; rNcor=1; rlogoDP=4; rNIcor=1; rNsEucl=10; rSSD=10; rNSW=10; rank_mean=7.000; match_rank=5
a 0 204 0 0 35 0 259 80 300 431 1 143
c 0 69 0 0 0 431 48 258 130 0 169 145
g 0 138 0 0 365 0 85 0 0 0 78 60
t 0 20 431 431 31 0 39 93 1 0 183 83
|
One-to-n matrix alignment; reference matrix: positions_8nt_m4_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| positions_8nt_m4_shift0 (positions_8nt_m4) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; positions_8nt_m4; m=0 (reference); ncol1=17; shift=0; ncol=17; raTGGTTGCACAAyAwt
; Alignment reference
a 176 350 19 19 55 1 1 11 1 634 4 646 645 6 548 174 92
c 61 81 8 2 8 0 0 2 643 3 635 1 0 239 29 149 112
g 352 112 19 612 578 0 0 628 0 5 1 0 0 12 34 147 50
t 58 104 601 14 6 646 646 6 3 5 7 0 2 390 36 177 393
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift4 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
 |
0.889 |
0.576 |
9.855 |
0.555 |
0.920 |
1.561 |
0.929 |
5 |
16 |
1 |
10 |
6 |
6 |
6 |
7.143 |
6 |
; positions_8nt_m4 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=4; strand=D; shift=4; score= 7.1429; ----rTTGCacMAym--
; cor=0.889; Ncor=0.576; logoDP=9.855; NIcor=0.555; NsEucl=0.920; SSD=1.561; NSW=0.929; rcor=5; rNcor=16; rlogoDP=1; rNIcor=10; rNsEucl=6; rSSD=6; rNSW=6; rank_mean=7.143; match_rank=6
a 0 0 0 0 204 0 0 35 0 259 80 300 431 1 143 0 0
c 0 0 0 0 69 0 0 0 431 48 258 130 0 169 145 0 0
g 0 0 0 0 138 0 0 365 0 85 0 0 0 78 60 0 0
t 0 0 0 0 20 431 431 31 0 39 93 1 0 183 83 0 0
|
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m5_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| oligos_7nt_mkv5_m5_shift0 (oligos_7nt_mkv5_m5) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; wrTTGCTCAAya
; Alignment reference
a 790 1154 0 0 0 0 5 0 2774 2774 284 977
c 474 551 0 1 0 2774 0 2774 0 0 848 665
g 595 751 0 0 2774 0 6 0 0 0 483 459
t 915 318 2774 2773 0 0 2763 0 0 0 1159 673
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift1 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
|
0.847 |
0.776 |
9.834 |
0.772 |
0.915 |
1.733 |
0.921 |
14 |
2 |
2 |
2 |
11 |
11 |
11 |
7.571 |
7 |
; oligos_7nt_mkv5_m5 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=1; strand=D; shift=1; score= 7.5714; -rTTGCacMAym
; cor=0.847; Ncor=0.776; logoDP=9.834; NIcor=0.772; NsEucl=0.915; SSD=1.733; NSW=0.921; rcor=14; rNcor=2; rlogoDP=2; rNIcor=2; rNsEucl=11; rSSD=11; rNSW=11; rank_mean=7.571; match_rank=7
a 0 204 0 0 35 0 259 80 300 431 1 143
c 0 69 0 0 0 431 48 258 130 0 169 145
g 0 138 0 0 365 0 85 0 0 0 78 60
t 0 20 431 431 31 0 39 93 1 0 183 83
|
One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m3_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| oligos_8nt_mkv6_m3_shift0 (oligos_8nt_mkv6_m3) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; oligos_8nt_mkv6_m3; m=0 (reference); ncol1=14; shift=0; ncol=14; wtATTGAGCAATaw
; Alignment reference
a 1041 669 2747 14 15 176 2352 4 72 3314 3314 89 1418 955
c 573 505 180 6 5 9 210 10 3149 10 9 291 657 749
g 791 682 325 9 20 3053 96 3305 6 4 4 213 534 676
t 930 1479 83 3306 3295 97 677 16 108 7 8 2742 726 955
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_rc_shift1 (do560+do843_mmus_cebpa_liver_meme_top_m1_rc) |
 |
0.881 |
0.692 |
4.135 |
0.136 |
0.925 |
1.378 |
0.937 |
6 |
5 |
21 |
21 |
5 |
5 |
5 |
9.714 |
9 |
; oligos_8nt_mkv6_m3 versus do560+do843_mmus_cebpa_liver_meme_top_m1_rc; m=1/1; ncol2=11; w=11; offset=1; strand=R; shift=1; score= 9.7143; -krTKgtGCAAy--
; cor=0.881; Ncor=0.692; logoDP=4.135; NIcor=0.136; NsEucl=0.925; SSD=1.378; NSW=0.937; rcor=6; rNcor=5; rlogoDP=21; rNIcor=21; rNsEucl=5; rSSD=5; rNSW=5; rank_mean=9.714; match_rank=9
a 0 83 183 0 1 93 39 0 31 431 431 20 0 0
c 0 60 78 0 0 0 85 0 365 0 0 138 0 0
g 0 145 169 0 130 258 48 431 0 0 0 69 0 0
t 0 143 1 431 300 80 259 0 35 0 0 204 0 0
|
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m1_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| oligos_6nt_mkv4_m1_shift0 (oligos_6nt_mkv4_m1) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=15; shift=0; ncol=15; dkATTGTGCAATCwt
; Alignment reference
a 1017 719 2822 11 5 121 129 5 243 3289 3292 59 474 1377 760
c 520 532 95 7 0 18 37 1 2929 18 4 304 2259 685 751
g 845 848 350 11 35 3067 63 3295 7 1 5 76 297 337 623
t 927 1210 42 3280 3269 103 3080 8 130 1 8 2870 279 910 1175
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_rc_shift1 (do560+do843_mmus_cebpa_liver_meme_top_m1_rc) |
|
0.923 |
0.677 |
4.072 |
0.076 |
0.935 |
1.016 |
0.954 |
3 |
9 |
23 |
24 |
3 |
3 |
3 |
9.714 |
8 |
; oligos_6nt_mkv4_m1 versus do560+do843_mmus_cebpa_liver_meme_top_m1_rc; m=1/1; ncol2=11; w=11; offset=1; strand=R; shift=1; score= 9.7143; -krTKgtGCAAy---
; cor=0.923; Ncor=0.677; logoDP=4.072; NIcor=0.076; NsEucl=0.935; SSD=1.016; NSW=0.954; rcor=3; rNcor=9; rlogoDP=23; rNIcor=24; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=9.714; match_rank=8
a 0 83 183 0 1 93 39 0 31 431 431 20 0 0 0
c 0 60 78 0 0 0 85 0 365 0 0 138 0 0 0
g 0 145 169 0 130 258 48 431 0 0 0 69 0 0 0
t 0 143 1 431 300 80 259 0 35 0 0 204 0 0 0
|
One-to-n matrix alignment; reference matrix: positions_8nt_m1_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| positions_8nt_m1_shift0 (positions_8nt_m1) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; positions_8nt_m1; m=0 (reference); ncol1=16; shift=0; ncol=16; amAGATTGCAAAACww
; Alignment reference
a 172 182 482 52 497 2 2 12 3 517 451 522 535 8 215 163
c 112 161 5 27 15 3 0 2 539 6 70 25 3 479 124 119
g 134 132 23 439 22 2 2 518 5 15 2 2 7 22 43 128
t 131 74 39 31 15 542 545 17 2 11 26 0 4 40 167 139
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift4 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
|
0.862 |
0.593 |
8.897 |
0.572 |
0.917 |
1.651 |
0.925 |
11 |
13 |
12 |
9 |
8 |
8 |
8 |
9.857 |
10 |
; positions_8nt_m1 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=4; strand=D; shift=4; score= 9.8571; ----rTTGCacMAym-
; cor=0.862; Ncor=0.593; logoDP=8.897; NIcor=0.572; NsEucl=0.917; SSD=1.651; NSW=0.925; rcor=11; rNcor=13; rlogoDP=12; rNIcor=9; rNsEucl=8; rSSD=8; rNSW=8; rank_mean=9.857; match_rank=10
a 0 0 0 0 204 0 0 35 0 259 80 300 431 1 143 0
c 0 0 0 0 69 0 0 0 431 48 258 130 0 169 145 0
g 0 0 0 0 138 0 0 365 0 85 0 0 0 78 60 0
t 0 0 0 0 20 431 431 31 0 39 93 1 0 183 83 0
|
One-to-n matrix alignment; reference matrix: positions_7nt_m2_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| positions_7nt_m2_shift0 (positions_7nt_m2) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; positions_7nt_m2; m=0 (reference); ncol1=17; shift=0; ncol=17; rmAGATTGCACAACTyt
; Alignment reference
a 94 132 260 16 314 0 0 10 2 311 7 331 333 6 35 67 73
c 71 85 4 10 5 0 0 0 330 11 318 3 0 296 15 105 76
g 95 77 9 277 13 1 2 309 1 1 1 0 0 7 2 77 54
t 74 40 61 31 2 333 332 15 1 11 8 0 1 25 282 85 131
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift4 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
|
0.869 |
0.563 |
9.570 |
0.543 |
0.913 |
1.819 |
0.917 |
8 |
19 |
6 |
12 |
12 |
12 |
12 |
11.571 |
11 |
; positions_7nt_m2 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=4; strand=D; shift=4; score=11.5714; ----rTTGCacMAym--
; cor=0.869; Ncor=0.563; logoDP=9.570; NIcor=0.543; NsEucl=0.913; SSD=1.819; NSW=0.917; rcor=8; rNcor=19; rlogoDP=6; rNIcor=12; rNsEucl=12; rSSD=12; rNSW=12; rank_mean=11.571; match_rank=11
a 0 0 0 0 204 0 0 35 0 259 80 300 431 1 143 0 0
c 0 0 0 0 69 0 0 0 431 48 258 130 0 169 145 0 0
g 0 0 0 0 138 0 0 365 0 85 0 0 0 78 60 0 0
t 0 0 0 0 20 431 431 31 0 39 93 1 0 183 83 0 0
|
One-to-n matrix alignment; reference matrix: positions_7nt_m5_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| positions_7nt_m5_shift0 (positions_7nt_m5) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; positions_7nt_m5; m=0 (reference); ncol1=17; shift=0; ncol=17; wmACATTGCACAACTsy
; Alignment reference
a 73 84 193 16 219 0 0 4 0 221 11 226 224 2 20 52 44
c 48 64 6 163 4 0 0 0 227 3 213 1 0 205 12 64 62
g 45 44 16 18 0 0 3 206 0 1 1 0 1 4 0 58 48
t 62 36 13 31 5 228 225 18 1 3 3 1 3 17 196 54 74
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift4 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
|
0.863 |
0.558 |
9.473 |
0.537 |
0.911 |
1.916 |
0.913 |
10 |
21 |
8 |
14 |
13 |
13 |
13 |
13.143 |
12 |
; positions_7nt_m5 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=4; strand=D; shift=4; score=13.1429; ----rTTGCacMAym--
; cor=0.863; Ncor=0.558; logoDP=9.473; NIcor=0.537; NsEucl=0.911; SSD=1.916; NSW=0.913; rcor=10; rNcor=21; rlogoDP=8; rNIcor=14; rNsEucl=13; rSSD=13; rNSW=13; rank_mean=13.143; match_rank=12
a 0 0 0 0 204 0 0 35 0 259 80 300 431 1 143 0 0
c 0 0 0 0 69 0 0 0 431 48 258 130 0 169 145 0 0
g 0 0 0 0 138 0 0 365 0 85 0 0 0 78 60 0 0
t 0 0 0 0 20 431 431 31 0 39 93 1 0 183 83 0 0
|
One-to-n matrix alignment; reference matrix: positions_8nt_m2_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| positions_8nt_m2_shift0 (positions_8nt_m2) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; positions_8nt_m2; m=0 (reference); ncol1=16; shift=0; ncol=16; wrTGATTGTGCAAgad
; Alignment reference
a 183 173 43 19 589 4 1 23 18 1 24 634 632 19 271 166
c 144 131 13 20 12 4 1 4 12 1 586 4 0 72 129 147
g 140 178 24 576 24 1 10 594 7 632 3 0 4 406 107 165
t 171 156 558 23 13 629 626 17 601 4 25 0 2 141 131 160
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_rc_shift3 (do560+do843_mmus_cebpa_liver_meme_top_m1_rc) |
 |
0.872 |
0.599 |
4.112 |
0.066 |
0.917 |
1.683 |
0.923 |
7 |
12 |
22 |
25 |
9 |
9 |
9 |
13.286 |
13 |
; positions_8nt_m2 versus do560+do843_mmus_cebpa_liver_meme_top_m1_rc; m=1/1; ncol2=11; w=11; offset=3; strand=R; shift=3; score=13.2857; ---krTKgtGCAAy--
; cor=0.872; Ncor=0.599; logoDP=4.112; NIcor=0.066; NsEucl=0.917; SSD=1.683; NSW=0.923; rcor=7; rNcor=12; rlogoDP=22; rNIcor=25; rNsEucl=9; rSSD=9; rNSW=9; rank_mean=13.286; match_rank=13
a 0 0 0 83 183 0 1 93 39 0 31 431 431 20 0 0
c 0 0 0 60 78 0 0 0 85 0 365 0 0 138 0 0
g 0 0 0 145 169 0 130 258 48 431 0 0 0 69 0 0
t 0 0 0 143 1 431 300 80 259 0 35 0 0 204 0 0
|
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m3_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| oligos_7nt_mkv5_m3_shift0 (oligos_7nt_mkv5_m3) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=12; shift=0; ncol=12; wrTTACACAAya
; Alignment reference
a 701 1073 23 1 2580 0 2542 0 2578 2579 307 920
c 409 457 6 0 0 2580 0 2580 0 1 755 634
g 616 697 30 0 0 0 38 0 2 0 388 415
t 854 353 2521 2579 0 0 0 0 0 0 1130 611
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift1 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
|
0.795 |
0.729 |
8.894 |
0.708 |
0.904 |
2.244 |
0.898 |
19 |
4 |
13 |
4 |
18 |
19 |
18 |
13.571 |
14 |
; oligos_7nt_mkv5_m3 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=1; strand=D; shift=1; score=13.5714; -rTTGCacMAym
; cor=0.795; Ncor=0.729; logoDP=8.894; NIcor=0.708; NsEucl=0.904; SSD=2.244; NSW=0.898; rcor=19; rNcor=4; rlogoDP=13; rNIcor=4; rNsEucl=18; rSSD=19; rNSW=18; rank_mean=13.571; match_rank=14
a 0 204 0 0 35 0 259 80 300 431 1 143
c 0 69 0 0 0 431 48 258 130 0 169 145
g 0 138 0 0 365 0 85 0 0 0 78 60
t 0 20 431 431 31 0 39 93 1 0 183 83
|
One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m4_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| oligos_8nt_mkv6_m4_shift0 (oligos_8nt_mkv6_m4) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; oligos_8nt_mkv6_m4; m=0 (reference); ncol1=13; shift=0; ncol=13; wrTTACACAATah
; Alignment reference
a 768 1278 9 3 2545 2 2026 1 2529 2545 143 934 674
c 372 377 3 0 0 2552 7 2516 4 1 447 595 648
g 562 670 8 10 10 2 516 0 21 8 179 403 433
t 862 239 2544 2551 9 8 15 47 10 10 1795 632 809
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift1 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
|
0.800 |
0.677 |
8.714 |
0.660 |
0.906 |
2.155 |
0.902 |
17 |
8 |
14 |
7 |
17 |
18 |
17 |
14.000 |
15 |
; oligos_8nt_mkv6_m4 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=1; strand=D; shift=1; score= 14; -rTTGCacMAym-
; cor=0.800; Ncor=0.677; logoDP=8.714; NIcor=0.660; NsEucl=0.906; SSD=2.155; NSW=0.902; rcor=17; rNcor=8; rlogoDP=14; rNIcor=7; rNsEucl=17; rSSD=18; rNSW=17; rank_mean=14.000; match_rank=15
a 0 204 0 0 35 0 259 80 300 431 1 143 0
c 0 69 0 0 0 431 48 258 130 0 169 145 0
g 0 138 0 0 365 0 85 0 0 0 78 60 0
t 0 20 431 431 31 0 39 93 1 0 183 83 0
|
One-to-n matrix alignment; reference matrix: positions_6nt_m4_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| positions_6nt_m4_shift0 (positions_6nt_m4) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; positions_6nt_m4; m=0 (reference); ncol1=18; shift=0; ncol=18; wsATGTTGCACAACAGtr
; Alignment reference
a 39 29 88 5 6 0 1 4 2 115 3 118 117 2 106 5 21 32
c 22 32 16 1 4 0 0 0 114 0 110 0 0 110 2 8 25 29
g 27 31 7 0 106 0 0 110 1 0 1 0 0 3 2 99 25 33
t 30 26 7 112 2 118 117 4 1 3 4 0 1 3 8 6 47 24
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift4 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
|
0.855 |
0.522 |
9.394 |
0.500 |
0.909 |
2.020 |
0.908 |
12 |
24 |
10 |
17 |
15 |
15 |
15 |
15.429 |
17 |
; positions_6nt_m4 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=4; strand=D; shift=4; score=15.4286; ----rTTGCacMAym---
; cor=0.855; Ncor=0.522; logoDP=9.394; NIcor=0.500; NsEucl=0.909; SSD=2.020; NSW=0.908; rcor=12; rNcor=24; rlogoDP=10; rNIcor=17; rNsEucl=15; rSSD=15; rNSW=15; rank_mean=15.429; match_rank=17
a 0 0 0 0 204 0 0 35 0 259 80 300 431 1 143 0 0 0
c 0 0 0 0 69 0 0 0 431 48 258 130 0 169 145 0 0 0
g 0 0 0 0 138 0 0 365 0 85 0 0 0 78 60 0 0 0
t 0 0 0 0 20 431 431 31 0 39 93 1 0 183 83 0 0 0
|
One-to-n matrix alignment; reference matrix: positions_7nt_m4_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| positions_7nt_m4_shift0 (positions_7nt_m4) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; positions_7nt_m4; m=0 (reference); ncol1=17; shift=0; ncol=17; wyCTCTTGCACAACTbh
; Alignment reference
a 53 47 13 1 20 0 1 2 0 180 11 195 197 3 6 36 50
c 42 60 160 8 160 0 0 0 198 8 185 2 1 178 15 53 54
g 45 38 9 0 18 0 1 189 1 3 1 1 0 3 3 54 24
t 59 54 17 190 1 199 197 8 0 8 2 1 1 15 175 56 71
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift4 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
|
0.834 |
0.540 |
9.481 |
0.527 |
0.906 |
2.141 |
0.903 |
15 |
22 |
7 |
15 |
16 |
17 |
16 |
15.429 |
16 |
; positions_7nt_m4 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=4; strand=D; shift=4; score=15.4286; ----rTTGCacMAym--
; cor=0.834; Ncor=0.540; logoDP=9.481; NIcor=0.527; NsEucl=0.906; SSD=2.141; NSW=0.903; rcor=15; rNcor=22; rlogoDP=7; rNIcor=15; rNsEucl=16; rSSD=17; rNSW=16; rank_mean=15.429; match_rank=16
a 0 0 0 0 204 0 0 35 0 259 80 300 431 1 143 0 0
c 0 0 0 0 69 0 0 0 431 48 258 130 0 169 145 0 0
g 0 0 0 0 138 0 0 365 0 85 0 0 0 78 60 0 0
t 0 0 0 0 20 431 431 31 0 39 93 1 0 183 83 0 0
|
One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m2_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| oligos_8nt_mkv6_m2_shift0 (oligos_8nt_mkv6_m2) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; oligos_8nt_mkv6_m2; m=0 (reference); ncol1=14; shift=0; ncol=14; wkATTGTGAAATaw
; Alignment reference
a 1308 894 3061 24 26 74 72 19 3238 3937 4012 92 1614 1207
c 658 553 238 10 9 14 263 2 359 63 6 333 982 869
g 987 1034 569 8 32 3924 36 3990 11 6 7 246 669 786
t 1082 1554 167 3993 3968 23 3664 24 427 29 10 3364 770 1173
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_rc_shift1 (do560+do843_mmus_cebpa_liver_meme_top_m1_rc) |
|
0.820 |
0.644 |
4.004 |
0.138 |
0.909 |
2.015 |
0.908 |
16 |
11 |
24 |
20 |
14 |
14 |
14 |
16.143 |
18 |
; oligos_8nt_mkv6_m2 versus do560+do843_mmus_cebpa_liver_meme_top_m1_rc; m=1/1; ncol2=11; w=11; offset=1; strand=R; shift=1; score=16.1429; -krTKgtGCAAy--
; cor=0.820; Ncor=0.644; logoDP=4.004; NIcor=0.138; NsEucl=0.909; SSD=2.015; NSW=0.908; rcor=16; rNcor=11; rlogoDP=24; rNIcor=20; rNsEucl=14; rSSD=14; rNSW=14; rank_mean=16.143; match_rank=18
a 0 83 183 0 1 93 39 0 31 431 431 20 0 0
c 0 60 78 0 0 0 85 0 365 0 0 138 0 0
g 0 145 169 0 130 258 48 431 0 0 0 69 0 0
t 0 143 1 431 300 80 259 0 35 0 0 204 0 0
|
One-to-n matrix alignment; reference matrix: positions_7nt_m1_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| positions_7nt_m1_shift0 (positions_7nt_m1) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; positions_7nt_m1; m=0 (reference); ncol1=15; shift=0; ncol=15; wtATTTCACAATCwy
; Alignment reference
a 394 218 1344 6 10 132 6 1281 17 1366 1387 18 237 486 348
c 277 242 17 9 7 9 1392 26 1335 33 4 63 1048 300 369
g 313 341 33 4 46 166 3 48 5 1 6 13 43 155 231
t 419 602 9 1384 1340 1096 2 48 46 3 6 1309 75 462 455
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift2 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
|
0.796 |
0.583 |
8.448 |
0.547 |
0.898 |
2.497 |
0.886 |
18 |
14 |
15 |
11 |
20 |
22 |
20 |
17.143 |
19 |
; positions_7nt_m1 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=2; strand=D; shift=2; score=17.1429; --rTTGCacMAym--
; cor=0.796; Ncor=0.583; logoDP=8.448; NIcor=0.547; NsEucl=0.898; SSD=2.497; NSW=0.886; rcor=18; rNcor=14; rlogoDP=15; rNIcor=11; rNsEucl=20; rSSD=22; rNSW=20; rank_mean=17.143; match_rank=19
a 0 0 204 0 0 35 0 259 80 300 431 1 143 0 0
c 0 0 69 0 0 0 431 48 258 130 0 169 145 0 0
g 0 0 138 0 0 365 0 85 0 0 0 78 60 0 0
t 0 0 20 431 431 31 0 39 93 1 0 183 83 0 0
|
One-to-n matrix alignment; reference matrix: dyads_m3_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| dyads_m3_shift0 (dyads_m3) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; dyads_m3; m=0 (reference); ncol1=10; shift=0; ncol=12; wdTTGCAAhw--
; Alignment reference
a 3278 3895 0 0 0 0 12984 12984 4097 5695 0 0
c 1633 1516 0 0 0 12984 0 0 3476 2378 0 0
g 2378 3476 0 0 12984 0 0 0 1516 1633 0 0
t 5695 4097 12984 12984 0 0 0 0 3895 3278 0 0
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift1 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
|
0.763 |
0.572 |
7.208 |
0.538 |
0.886 |
2.106 |
0.883 |
25 |
17 |
18 |
13 |
25 |
16 |
23 |
19.571 |
20 |
; dyads_m3 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=9; offset=1; strand=D; shift=1; score=19.5714; -rTTGCacMAym
; cor=0.763; Ncor=0.572; logoDP=7.208; NIcor=0.538; NsEucl=0.886; SSD=2.106; NSW=0.883; rcor=25; rNcor=17; rlogoDP=18; rNIcor=13; rNsEucl=25; rSSD=16; rNSW=23; rank_mean=19.571; match_rank=20
a 0 204 0 0 35 0 259 80 300 431 1 143
c 0 69 0 0 0 431 48 258 130 0 169 145
g 0 138 0 0 365 0 85 0 0 0 78 60
t 0 20 431 431 31 0 39 93 1 0 183 83
|
One-to-n matrix alignment; reference matrix: positions_6nt_m1_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| positions_6nt_m1_shift0 (positions_6nt_m1) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; positions_6nt_m1; m=0 (reference); ncol1=15; shift=0; ncol=15; wwAGATTGTGAAAtm
; Alignment reference
a 357 259 768 43 865 5 8 36 26 3 721 847 870 59 359
c 127 176 19 23 8 5 2 2 40 1 79 31 2 182 239
g 172 215 31 695 16 3 17 850 7 885 6 5 14 114 107
t 237 243 75 132 4 880 866 5 820 4 87 10 7 538 188
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_rc_shift3 (do560+do843_mmus_cebpa_liver_meme_top_m1_rc) |
|
0.795 |
0.583 |
3.785 |
0.125 |
0.901 |
2.363 |
0.893 |
20 |
15 |
25 |
22 |
19 |
20 |
19 |
20.000 |
21 |
; positions_6nt_m1 versus do560+do843_mmus_cebpa_liver_meme_top_m1_rc; m=1/1; ncol2=11; w=11; offset=3; strand=R; shift=3; score= 20; ---krTKgtGCAAy-
; cor=0.795; Ncor=0.583; logoDP=3.785; NIcor=0.125; NsEucl=0.901; SSD=2.363; NSW=0.893; rcor=20; rNcor=15; rlogoDP=25; rNIcor=22; rNsEucl=19; rSSD=20; rNSW=19; rank_mean=20.000; match_rank=21
a 0 0 0 83 183 0 1 93 39 0 31 431 431 20 0
c 0 0 0 60 78 0 0 0 85 0 365 0 0 138 0
g 0 0 0 145 169 0 130 258 48 431 0 0 0 69 0
t 0 0 0 143 1 431 300 80 259 0 35 0 0 204 0
|
One-to-n matrix alignment; reference matrix: positions_6nt_m3_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| positions_6nt_m3_shift0 (positions_6nt_m3) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; positions_6nt_m3; m=0 (reference); ncol1=13; shift=0; ncol=14; rmAGTTGCAAAay-
; Alignment reference
a 115 113 342 0 0 0 0 0 343 342 344 223 67 0
c 76 100 2 0 0 1 0 344 0 0 0 27 93 0
g 90 71 0 344 0 0 344 0 1 0 0 50 71 0
t 63 60 0 0 344 343 0 0 0 2 0 44 113 0
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift3 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
|
0.782 |
0.558 |
8.249 |
0.522 |
0.890 |
2.433 |
0.878 |
21 |
20 |
16 |
16 |
24 |
21 |
25 |
20.429 |
22 |
; positions_6nt_m3 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=10; offset=3; strand=D; shift=3; score=20.4286; ---rTTGCacMAym
; cor=0.782; Ncor=0.558; logoDP=8.249; NIcor=0.522; NsEucl=0.890; SSD=2.433; NSW=0.878; rcor=21; rNcor=20; rlogoDP=16; rNIcor=16; rNsEucl=24; rSSD=21; rNSW=25; rank_mean=20.429; match_rank=22
a 0 0 0 204 0 0 35 0 259 80 300 431 1 143
c 0 0 0 69 0 0 0 431 48 258 130 0 169 145
g 0 0 0 138 0 0 365 0 85 0 0 0 78 60
t 0 0 0 20 431 431 31 0 39 93 1 0 183 83
|
One-to-n matrix alignment; reference matrix: positions_6nt_m2_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| positions_6nt_m2_shift0 (positions_6nt_m2) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; positions_6nt_m2; m=0 (reference); ncol1=15; shift=0; ncol=15; dkATTACGCAAGArw
; Alignment reference
a 201 156 603 2 1 580 30 65 11 668 668 9 620 178 200
c 107 113 23 2 2 3 534 20 638 1 0 57 15 145 138
g 172 198 33 1 11 48 28 569 1 0 1 531 14 185 143
t 189 202 10 664 655 38 77 15 19 0 0 72 20 161 188
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_rc_shift1 (do560+do843_mmus_cebpa_liver_meme_top_m1_rc) |
|
0.768 |
0.563 |
4.172 |
0.096 |
0.898 |
2.497 |
0.886 |
23 |
18 |
20 |
23 |
21 |
23 |
21 |
21.286 |
23 |
; positions_6nt_m2 versus do560+do843_mmus_cebpa_liver_meme_top_m1_rc; m=1/1; ncol2=11; w=11; offset=1; strand=R; shift=1; score=21.2857; -krTKgtGCAAy---
; cor=0.768; Ncor=0.563; logoDP=4.172; NIcor=0.096; NsEucl=0.898; SSD=2.497; NSW=0.886; rcor=23; rNcor=18; rlogoDP=20; rNIcor=23; rNsEucl=21; rSSD=23; rNSW=21; rank_mean=21.286; match_rank=23
a 0 83 183 0 1 93 39 0 31 431 431 20 0 0 0
c 0 60 78 0 0 0 85 0 365 0 0 138 0 0 0
g 0 145 169 0 130 258 48 431 0 0 0 69 0 0 0
t 0 143 1 431 300 80 259 0 35 0 0 204 0 0 0
|
One-to-n matrix alignment; reference matrix: positions_8nt_m5_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| positions_8nt_m5_shift0 (positions_8nt_m5) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; positions_8nt_m5; m=0 (reference); ncol1=17; shift=0; ncol=17; rwATGTTGCAATCATtw
; Alignment reference
a 51 42 154 1 0 17 1 1 7 163 165 3 8 146 9 41 46
c 33 31 4 1 2 3 4 1 152 2 0 3 152 7 13 38 40
g 45 38 7 0 155 2 5 164 1 0 0 3 2 3 10 36 34
t 37 55 1 164 9 144 156 0 6 1 1 157 4 10 134 51 46
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_rc_shift1 (do560+do843_mmus_cebpa_liver_meme_top_m1_rc) |
|
0.782 |
0.506 |
4.619 |
0.152 |
0.897 |
2.554 |
0.884 |
22 |
25 |
19 |
19 |
22 |
24 |
22 |
21.857 |
24 |
; positions_8nt_m5 versus do560+do843_mmus_cebpa_liver_meme_top_m1_rc; m=1/1; ncol2=11; w=11; offset=1; strand=R; shift=1; score=21.8571; -krTKgtGCAAy-----
; cor=0.782; Ncor=0.506; logoDP=4.619; NIcor=0.152; NsEucl=0.897; SSD=2.554; NSW=0.884; rcor=22; rNcor=25; rlogoDP=19; rNIcor=19; rNsEucl=22; rSSD=24; rNSW=22; rank_mean=21.857; match_rank=24
a 0 83 183 0 1 93 39 0 31 431 431 20 0 0 0 0 0
c 0 60 78 0 0 0 85 0 365 0 0 138 0 0 0 0 0
g 0 145 169 0 130 258 48 431 0 0 0 69 0 0 0 0 0
t 0 143 1 431 300 80 259 0 35 0 0 204 0 0 0 0 0
|
One-to-n matrix alignment; reference matrix: positions_7nt_m3_shift0 ; 2 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| positions_7nt_m3_shift0 (positions_7nt_m3) |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
; positions_7nt_m3; m=0 (reference); ncol1=16; shift=0; ncol=16; arAGATTGCGAAATrw
; Alignment reference
a 162 113 401 15 413 0 0 7 36 40 396 423 432 2 126 150
c 77 108 4 27 6 0 0 0 303 14 17 10 0 15 102 90
g 98 128 9 350 11 0 1 422 24 365 2 0 1 7 112 76
t 96 84 19 41 3 433 432 4 70 14 18 0 0 409 93 117
|
| do560+do843_mmus_cebpa_liver_meme_top_m1_shift4 (do560+do843_mmus_cebpa_liver_meme_top_m1) |
|
0.763 |
0.525 |
8.143 |
0.491 |
0.895 |
2.660 |
0.879 |
24 |
23 |
17 |
18 |
23 |
25 |
24 |
22.000 |
25 |
; positions_7nt_m3 versus do560+do843_mmus_cebpa_liver_meme_top_m1; m=1/1; ncol2=11; w=11; offset=4; strand=D; shift=4; score= 22; ----rTTGCacMAym-
; cor=0.763; Ncor=0.525; logoDP=8.143; NIcor=0.491; NsEucl=0.895; SSD=2.660; NSW=0.879; rcor=24; rNcor=23; rlogoDP=17; rNIcor=18; rNsEucl=23; rSSD=25; rNSW=24; rank_mean=22.000; match_rank=25
a 0 0 0 0 204 0 0 35 0 259 80 300 431 1 143 0
c 0 0 0 0 69 0 0 0 431 48 258 130 0 169 145 0
g 0 0 0 0 138 0 0 365 0 85 0 0 0 78 60 0
t 0 0 0 0 20 431 431 31 0 39 93 1 0 183 83 0
|