; convert-matrix -v 1 -i $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.182940_2014-09-03.182940_LkVj4M/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.182940_2014-09-03.182940_LkVj4M/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Input files
; input /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.182940_2014-09-03.182940_LkVj4M/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format transfac
; Output files
; output /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.182940_2014-09-03.182940_LkVj4M/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Output format tab
; pseudo-weight 1
a 3310 3022 0 9626 0 1996 2451 2724 2823 3484 4759 9626 0 9626 3102 3127
c 1582 1807 0 0 0 1020 1192 2568 1511 2499 1851 0 0 0 1695 1607
g 1607 1695 0 0 0 1851 2499 1511 2568 1192 1020 0 0 0 1807 1582
t 3127 3102 9626 0 9626 4759 3484 2823 2724 2451 1996 0 9626 0 3022 3310
//
a 169 428 683 502 27 709 718 719 19 722 721 719 5 714 717 592 306
c 112 46 25 9 9 3 3 1 2 1 1 1 6 1 0 22 54
g 29 179 5 25 3 5 2 4 4 0 2 3 0 5 3 52 41
t 415 72 12 189 686 8 2 1 700 2 1 2 714 5 5 59 324
//
a 3278 3895 0 0 0 0 12984 12984 4097 5695
c 1633 1516 0 0 0 12984 0 0 3476 2378
g 2378 3476 0 0 12984 0 0 0 1516 1633
t 5695 4097 12984 12984 0 0 0 0 3895 3278
//
a 816 878 261 1523 1525 1523 37 1539 1545 1536 17 1531 1527 1524 565 769
c 357 125 635 13 8 9 27 9 9 8 28 11 20 10 156 222
g 180 136 26 10 26 21 21 13 8 19 16 16 8 12 105 130
t 214 428 645 21 8 14 1482 6 5 4 1506 9 12 21 741 446
//
a 1080 1079 0 3966 0 0 0 0 0 759 1088
c 830 910 3966 0 0 0 0 3966 0 1011 842
g 779 741 0 0 0 0 0 0 0 1042 611
t 1277 1236 0 0 3966 3966 3966 0 3966 1154 1425
//
; Host name rsat
; Job started 2014-09-03.184101
; Job done 2014-09-03.184101
; Seconds 0.28
; user 0.28
; system 0.02
; cuser 0
; csystem 0