; pattern-assembly -v 1 -i $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.182940_2014-09-03.182940_LkVj4M/results/positions_8nt/peak-motifs_positions-2str-noov_8nt_ci50.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.182940_2014-09-03.182940_LkVj4M/results/positions_8nt/peak-motifs_positions-2str-noov_8nt_ci50_pssm.asmb ; Input file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.182940_2014-09-03.182940_LkVj4M/results/positions_8nt/peak-motifs_positions-2str-noov_8nt_ci50.tab ; Output file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.182940_2014-09-03.182940_LkVj4M/results/positions_8nt/peak-motifs_positions-2str-noov_8nt_ci50_pssm.asmb ; Input score column 9 ; Output score column 0 ; Strand-insensitive assembly ; Max flanking bases 1 ; Max substitutions 1 ; Min matches 0 ; Min weight 0 ; Max assembly size 50 ; Max assembly width 20 ; Top number of patterns 100 ; Number of input patterns 100 ; ; assembly # 1 seed: ttgcaaaa 5 assembled patterns length 12 ; alignt rev_cpl score agattgca.... ....tgcaatct 300 .gattgcaa... ...ttgcaatc. 60.08 ..attgcaaa.. ..tttgcaat.. 300 ...ttgcaaaa. .ttttgcaa... 300 ....tgcaaaac gttttgca.... 60.39 agattgcaaaac gttttgcaatct 300 best consensus ; assembly # 2 seed: gattgtgc 5 assembled patterns length 12 ; alignt rev_cpl score tgattgtg.... ....cacaatca 71.72 .gattgtgc... ...gcacaatc. 300 ..attgtgca.. ..tgcacaat.. 300 ...ttgtgcaa. .ttgcacaa... 300 ....tgtgcaag cttgcaca.... 300 tgattgtgcaag cttgcacaatca 300 best consensus ; assembly # 3 seed: ttgcccaa 3 assembled patterns length 10 ; alignt rev_cpl score attgccca.. ..tgggcaat 53.90 .ttgcccaa. .ttgggcaa. 300 ..tgcccaat attgggca.. 52.41 attgcccaat attgggcaat 300 best consensus ; assembly # 4 seed: gttgcaca 6 assembled patterns length 13 ; alignt rev_cpl score tggttgca..... .....tgcaacca 74.34 .ggttgcac.... ....gtgcaacc. 300 ..gttgcaca... ...tgtgcaac.. 300 ...ttgcacaa.. ..ttgtgcaa... 300 ....tgcacaat. .attgtgca.... 300 .....gcacaata tattgtgc..... 300 tggttgcacaata tattgtgcaacca 300 best consensus ; assembly # 5 seed: tgttgcaa 6 assembled patterns length 13 ; alignt rev_cpl score atgttgca..... .....tgcaacat 300 .tgttgcaa.... ....ttgcaaca. 300 ..gttgcaat... ...attgcaac.. 300 ...ttgcaatc.. ..gattgcaa... 60.08 ....tgcaatca. .tgattgca.... 300 .....gcaatcat atgattgc..... 49.80 atgttgcaatcat atgattgcaacat 300 best consensus ; Maximal number of assemblies is reached (5). Remaining patterns: 77. ; Host name rsat ; Job started 2014-09-03.185505 ; Job done 2014-09-03.185515 ; Seconds 10.7 ; user 10.7 ; system 0.01 ; cuser 0 ; csystem 0