; pattern-assembly -v 1 -i $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.182940_2014-09-03.182940_LkVj4M/results/positions_8nt/peak-motifs_positions-2str-noov_8nt_ci50.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.182940_2014-09-03.182940_LkVj4M/results/positions_8nt/peak-motifs_positions-2str-noov_8nt_ci50_pssm.asmb
; Input file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.182940_2014-09-03.182940_LkVj4M/results/positions_8nt/peak-motifs_positions-2str-noov_8nt_ci50.tab
; Output file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/03/peak-motifs.2014-09-03.182940_2014-09-03.182940_LkVj4M/results/positions_8nt/peak-motifs_positions-2str-noov_8nt_ci50_pssm.asmb
; Input score column 9
; Output score column 0
; Strand-insensitive assembly
; Max flanking bases 1
; Max substitutions 1
; Min matches 0
; Min weight 0
; Max assembly size 50
; Max assembly width 20
; Top number of patterns 100
; Number of input patterns 100
;
; assembly # 1 seed: ttgcaaaa 5 assembled patterns length 12
; alignt rev_cpl score
agattgca.... ....tgcaatct 300
.gattgcaa... ...ttgcaatc. 60.08
..attgcaaa.. ..tttgcaat.. 300
...ttgcaaaa. .ttttgcaa... 300
....tgcaaaac gttttgca.... 60.39
agattgcaaaac gttttgcaatct 300 best consensus
; assembly # 2 seed: gattgtgc 5 assembled patterns length 12
; alignt rev_cpl score
tgattgtg.... ....cacaatca 71.72
.gattgtgc... ...gcacaatc. 300
..attgtgca.. ..tgcacaat.. 300
...ttgtgcaa. .ttgcacaa... 300
....tgtgcaag cttgcaca.... 300
tgattgtgcaag cttgcacaatca 300 best consensus
; assembly # 3 seed: ttgcccaa 3 assembled patterns length 10
; alignt rev_cpl score
attgccca.. ..tgggcaat 53.90
.ttgcccaa. .ttgggcaa. 300
..tgcccaat attgggca.. 52.41
attgcccaat attgggcaat 300 best consensus
; assembly # 4 seed: gttgcaca 6 assembled patterns length 13
; alignt rev_cpl score
tggttgca..... .....tgcaacca 74.34
.ggttgcac.... ....gtgcaacc. 300
..gttgcaca... ...tgtgcaac.. 300
...ttgcacaa.. ..ttgtgcaa... 300
....tgcacaat. .attgtgca.... 300
.....gcacaata tattgtgc..... 300
tggttgcacaata tattgtgcaacca 300 best consensus
; assembly # 5 seed: tgttgcaa 6 assembled patterns length 13
; alignt rev_cpl score
atgttgca..... .....tgcaacat 300
.tgttgcaa.... ....ttgcaaca. 300
..gttgcaat... ...attgcaac.. 300
...ttgcaatc.. ..gattgcaa... 60.08
....tgcaatca. .tgattgca.... 300
.....gcaatcat atgattgc..... 49.80
atgttgcaatcat atgattgcaacat 300 best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 77.
; Host name rsat
; Job started 2014-09-03.185505
; Job done 2014-09-03.185515
; Seconds 10.7
; user 10.7
; system 0.01
; cuser 0
; csystem 0