; position-analysis -v 1 -i $RSAT/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml30_mis0.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title CEBPa_ChIP-seq_in_dog_liver_CRM_vs_Singleton -origin center -o $RSAT/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab ; Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. ; Sequence file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml30_mis0.fasta ; Sequence format fasta ; Sequence type dna ; Output file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab ; Oligo length 1 ; Occurrences counted on a single strands ; Background model estimation: homogeneous repartition ; Sequence statistics: ; Nb of sequences 19232 ; Sum of sequence lengths 4226380 ; Min sequence length 0 ; Max sequence length 790 ; Average sequence length 219 ; Possible positions 4226380 ; Oligonucleotide statistics: ; Total occurrences 4200965 ; Position interval parameters: ; Position interval 20 ; Number of windows 40 ; Total positions 4226380 ; Degrees of freedom 39 ; K-mer clustering parameters: ; Number of clusters 0 ; Clustering method complete ; Position intervals: ; window [min,max] mid seq occ ; 1 -20 [-399,-380] -389.5 2 18 ; 2 -19 [-379,-360] -369.5 4 62 ; 3 -18 [-359,-340] -349.5 10 125 ; 4 -17 [-339,-320] -329.5 18 265 ; 5 -16 [-319,-300] -309.5 29 475 ; 6 -15 [-299,-280] -289.5 44 749 ; 7 -14 [-279,-260] -269.5 71 1163 ; 8 -13 [-259,-240] -249.5 106 1743 ; 9 -12 [-239,-220] -229.5 209 3055 ; 10 -11 [-219,-200] -209.5 524 7207 ; 11 -10 [-199,-180] -189.5 1305 17898 ; 12 -9 [-179,-160] -169.5 2602 39094 ; 13 -8 [-159,-140] -149.5 4383 70053 ; 14 -7 [-139,-120] -129.5 6665 110533 ; 15 -6 [-119,-100] -109.5 9784 165153 ; 16 -5 [-99,-80] -89.5 13990 240291 ; 17 -4 [-79,-60] -69.5 17741 322817 ; 18 -3 [-59,-40] -49.5 19118 373397 ; 19 -2 [-39,-20] -29.5 19232 384118 ; 20 -1 [-19,0] -9.5 19232 384640 ; 21 0 [1,20] 10.5 19232 384640 ; 22 1 [21,40] 30.5 19231 383996 ; 23 2 [41,60] 50.5 19098 372054 ; 24 3 [61,80] 70.5 17605 319136 ; 25 4 [81,100] 90.5 13767 236026 ; 26 5 [101,120] 110.5 9605 161979 ; 27 6 [121,140] 130.5 6525 108185 ; 28 7 [141,160] 150.5 4265 68284 ; 29 8 [161,180] 170.5 2530 37803 ; 30 9 [181,200] 190.5 1248 17096 ; 31 10 [201,220] 210.5 505 6877 ; 32 11 [221,240] 230.5 199 2953 ; 33 12 [241,260] 250.5 104 1706 ; 34 13 [261,280] 270.5 69 1140 ; 35 14 [281,300] 290.5 44 734 ; 36 15 [301,320] 310.5 29 463 ; 37 16 [321,340] 330.5 18 260 ; 38 17 [341,360] 350.5 9 118 ; 39 18 [361,380] 370.5 4 60 ; 40 19 [381,400] 390.5 1 14 ; ; Column headers ; 1 seq pattern sequence ; 2 id pattern identifier ; 3 occ pattern occurrences ; 4 chi2 observed chi-square ; 5 df degrees of freedom ; 6 Pval P-value (probability for one word to be a false positive) ; 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) ; 8 sig Significance (sig = -log10(Eval)) ; 9 rank rank of the pattern according to sorting criterion ; 10 -389.5 occurrences in window 1 [-399,-380] ; 11 -369.5 occurrences in window 2 [-379,-360] ; 12 -349.5 occurrences in window 3 [-359,-340] ; 13 -329.5 occurrences in window 4 [-339,-320] ; 14 -309.5 occurrences in window 5 [-319,-300] ; 15 -289.5 occurrences in window 6 [-299,-280] ; 16 -269.5 occurrences in window 7 [-279,-260] ; 17 -249.5 occurrences in window 8 [-259,-240] ; 18 -229.5 occurrences in window 9 [-239,-220] ; 19 -209.5 occurrences in window 10 [-219,-200] ; 20 -189.5 occurrences in window 11 [-199,-180] ; 21 -169.5 occurrences in window 12 [-179,-160] ; 22 -149.5 occurrences in window 13 [-159,-140] ; 23 -129.5 occurrences in window 14 [-139,-120] ; 24 -109.5 occurrences in window 15 [-119,-100] ; 25 -89.5 occurrences in window 16 [-99,-80] ; 26 -69.5 occurrences in window 17 [-79,-60] ; 27 -49.5 occurrences in window 18 [-59,-40] ; 28 -29.5 occurrences in window 19 [-39,-20] ; 29 -9.5 occurrences in window 20 [-19,0] ; 30 10.5 occurrences in window 21 [1,20] ; 31 30.5 occurrences in window 22 [21,40] ; 32 50.5 occurrences in window 23 [41,60] ; 33 70.5 occurrences in window 24 [61,80] ; 34 90.5 occurrences in window 25 [81,100] ; 35 110.5 occurrences in window 26 [101,120] ; 36 130.5 occurrences in window 27 [121,140] ; 37 150.5 occurrences in window 28 [141,160] ; 38 170.5 occurrences in window 29 [161,180] ; 39 190.5 occurrences in window 30 [181,200] ; 40 210.5 occurrences in window 31 [201,220] ; 41 230.5 occurrences in window 32 [221,240] ; 42 250.5 occurrences in window 33 [241,260] ; 43 270.5 occurrences in window 34 [261,280] ; 44 290.5 occurrences in window 35 [281,300] ; 45 310.5 occurrences in window 36 [301,320] ; 46 330.5 occurrences in window 37 [321,340] ; 47 350.5 occurrences in window 38 [341,360] ; 48 370.5 occurrences in window 39 [361,380] ; 49 390.5 occurrences in window 40 [381,400] #seq id occ chi2 df Pval Eval sig rank -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 t t 1260517 285.1 38 1.3e-39 5.2e-39 38.29 1 3 24 38 76 111 213 359 502 898 2209 5458 11802 21043 33429 49805 72151 96175 110931 113500 113123 112682 112960 110346 95786 71833 49877 32974 20996 11706 5177 2109 864 516 296 221 159 94 43 25 3 c c 842690 278.5 38 2.3e-38 9.4e-38 37.03 2 3 13 28 47 97 169 252 358 642 1332 3472 7611 13562 21530 31977 47329 63635 74207 77007 77745 78036 78599 75160 63996 46825 31422 21156 13138 7319 3220 1314 564 349 250 137 96 52 33 7 1 a a 1255759 272.4 38 3.4e-37 1.4e-36 35.87 3 9 9 38 86 161 229 326 531 920 2250 5510 12075 21854 33823 50102 72242 96365 110211 112693 112315 113216 112880 110978 94608 70123 48171 32541 20394 11493 5293 2075 875 510 369 233 127 73 25 18 8 g g 841999 266.4 38 4.4e-36 1.8e-35 34.76 4 3 16 21 56 106 138 226 344 555 1374 3421 7531 13372 21360 32488 47339 64985 75821 78136 78035 77447 76972 73559 63107 46098 31630 20985 13481 7208 3357 1352 630 327 225 143 81 41 17 10 2 ; Host name rsat ; Job started 2014-09-06.124237 ; Job done 2014-09-06.124330 ; Seconds 53.12 ; user 53.12 ; system 0.01 ; cuser 0 ; csystem 0