; position-analysis -v 1 -i $RSAT/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/data/sequences/peak-motifs_test_maxlen1000_purged_ml30_mis0.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title CEBPa_ChIP-seq_in_dog_liver_CRM_vs_Singleton -origin center -o $RSAT/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab ; Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. ; Sequence file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/data/sequences/peak-motifs_test_maxlen1000_purged_ml30_mis0.fasta ; Sequence format fasta ; Sequence type dna ; Output file /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab ; Oligo length 1 ; Occurrences counted on a single strands ; Background model estimation: homogeneous repartition ; Sequence statistics: ; Nb of sequences 23807 ; Sum of sequence lengths 6774188 ; Min sequence length 0 ; Max sequence length 1000 ; Average sequence length 284 ; Possible positions 6774188 ; Oligonucleotide statistics: ; Total occurrences 6715218 ; Position interval parameters: ; Position interval 20 ; Number of windows 50 ; Total positions 6774188 ; Degrees of freedom 49 ; K-mer clustering parameters: ; Number of clusters 0 ; Clustering method complete ; Position intervals: ; window [min,max] mid seq occ ; 1 -25 [-499,-480] -489.5 9 172 ; 2 -24 [-479,-460] -469.5 19 290 ; 3 -23 [-459,-440] -449.5 27 443 ; 4 -22 [-439,-420] -429.5 34 628 ; 5 -21 [-419,-400] -409.5 50 809 ; 6 -20 [-399,-380] -389.5 70 1161 ; 7 -19 [-379,-360] -369.5 95 1603 ; 8 -18 [-359,-340] -349.5 155 2445 ; 9 -17 [-339,-320] -329.5 232 3849 ; 10 -16 [-319,-300] -309.5 355 5901 ; 11 -15 [-299,-280] -289.5 556 9085 ; 12 -14 [-279,-260] -269.5 829 14060 ; 13 -13 [-259,-240] -249.5 1262 20899 ; 14 -12 [-239,-220] -229.5 1969 32186 ; 15 -11 [-219,-200] -209.5 3441 53127 ; 16 -10 [-199,-180] -189.5 5958 94113 ; 17 -9 [-179,-160] -169.5 8914 150485 ; 18 -8 [-159,-140] -149.5 11859 211038 ; 19 -7 [-139,-120] -129.5 14465 265738 ; 20 -6 [-119,-100] -109.5 17129 317919 ; 21 -5 [-99,-80] -89.5 20117 375408 ; 22 -4 [-79,-60] -69.5 22461 429492 ; 23 -3 [-59,-40] -49.5 23320 460475 ; 24 -2 [-39,-20] -29.5 23807 471541 ; 25 -1 [-19,0] -9.5 23807 476140 ; 26 0 [1,20] 10.5 23807 476140 ; 27 1 [21,40] 30.5 23807 471057 ; 28 2 [41,60] 50.5 23306 459634 ; 29 3 [61,80] 70.5 22364 427144 ; 30 4 [81,100] 90.5 19965 372494 ; 31 5 [101,120] 110.5 16992 315271 ; 32 6 [121,140] 130.5 14364 263143 ; 33 7 [141,160] 150.5 11710 208079 ; 34 8 [161,180] 170.5 8775 147524 ; 35 9 [181,200] 190.5 5803 91558 ; 36 10 [201,220] 210.5 3325 51655 ; 37 11 [221,240] 230.5 1930 31433 ; 38 12 [241,260] 250.5 1233 20430 ; 39 13 [261,280] 270.5 816 13782 ; 40 14 [281,300] 290.5 546 8873 ; 41 15 [301,320] 310.5 340 5774 ; 42 16 [321,340] 330.5 228 3780 ; 43 17 [341,360] 350.5 153 2388 ; 44 18 [361,380] 370.5 93 1580 ; 45 19 [381,400] 390.5 67 1141 ; 46 20 [401,420] 410.5 50 795 ; 47 21 [421,440] 430.5 34 622 ; 48 22 [441,460] 450.5 26 435 ; 49 23 [461,480] 470.5 18 279 ; 50 24 [481,500] 490.5 9 170 ; ; Column headers ; 1 seq pattern sequence ; 2 id pattern identifier ; 3 occ pattern occurrences ; 4 chi2 observed chi-square ; 5 df degrees of freedom ; 6 Pval P-value (probability for one word to be a false positive) ; 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) ; 8 sig Significance (sig = -log10(Eval)) ; 9 rank rank of the pattern according to sorting criterion ; 10 -489.5 occurrences in window 1 [-499,-480] ; 11 -469.5 occurrences in window 2 [-479,-460] ; 12 -449.5 occurrences in window 3 [-459,-440] ; 13 -429.5 occurrences in window 4 [-439,-420] ; 14 -409.5 occurrences in window 5 [-419,-400] ; 15 -389.5 occurrences in window 6 [-399,-380] ; 16 -369.5 occurrences in window 7 [-379,-360] ; 17 -349.5 occurrences in window 8 [-359,-340] ; 18 -329.5 occurrences in window 9 [-339,-320] ; 19 -309.5 occurrences in window 10 [-319,-300] ; 20 -289.5 occurrences in window 11 [-299,-280] ; 21 -269.5 occurrences in window 12 [-279,-260] ; 22 -249.5 occurrences in window 13 [-259,-240] ; 23 -229.5 occurrences in window 14 [-239,-220] ; 24 -209.5 occurrences in window 15 [-219,-200] ; 25 -189.5 occurrences in window 16 [-199,-180] ; 26 -169.5 occurrences in window 17 [-179,-160] ; 27 -149.5 occurrences in window 18 [-159,-140] ; 28 -129.5 occurrences in window 19 [-139,-120] ; 29 -109.5 occurrences in window 20 [-119,-100] ; 30 -89.5 occurrences in window 21 [-99,-80] ; 31 -69.5 occurrences in window 22 [-79,-60] ; 32 -49.5 occurrences in window 23 [-59,-40] ; 33 -29.5 occurrences in window 24 [-39,-20] ; 34 -9.5 occurrences in window 25 [-19,0] ; 35 10.5 occurrences in window 26 [1,20] ; 36 30.5 occurrences in window 27 [21,40] ; 37 50.5 occurrences in window 28 [41,60] ; 38 70.5 occurrences in window 29 [61,80] ; 39 90.5 occurrences in window 30 [81,100] ; 40 110.5 occurrences in window 31 [101,120] ; 41 130.5 occurrences in window 32 [121,140] ; 42 150.5 occurrences in window 33 [141,160] ; 43 170.5 occurrences in window 34 [161,180] ; 44 190.5 occurrences in window 35 [181,200] ; 45 210.5 occurrences in window 36 [201,220] ; 46 230.5 occurrences in window 37 [221,240] ; 47 250.5 occurrences in window 38 [241,260] ; 48 270.5 occurrences in window 39 [261,280] ; 49 290.5 occurrences in window 40 [281,300] ; 50 310.5 occurrences in window 41 [301,320] ; 51 330.5 occurrences in window 42 [321,340] ; 52 350.5 occurrences in window 43 [341,360] ; 53 370.5 occurrences in window 44 [361,380] ; 54 390.5 occurrences in window 45 [381,400] ; 55 410.5 occurrences in window 46 [401,420] ; 56 430.5 occurrences in window 47 [421,440] ; 57 450.5 occurrences in window 48 [441,460] ; 58 470.5 occurrences in window 49 [461,480] ; 59 490.5 occurrences in window 50 [481,500] #seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5 a a 1878983 786.6 49 0.0e+00 0 300 1 50 67 105 176 212 330 486 748 1118 1697 2621 4082 5960 9337 15557 27280 43475 60387 75086 89082 103774 118105 125937 127656 127934 129838 129633 126982 117720 103251 87762 74132 58735 42379 26154 14855 8950 5951 3930 2538 1641 1133 680 465 336 240 185 122 68 41 t t 1882157 604.8 49 0.0e+00 0 300 2 47 96 134 196 237 330 464 666 1083 1695 2581 4100 6044 9216 15167 27093 42719 59582 74304 88776 104400 119251 127382 129754 129800 128126 128339 127000 118027 103303 88638 74273 59128 42256 26555 15050 9161 5896 3893 2579 1659 1089 692 448 332 205 178 102 71 40 c c 1477262 561.3 49 0.0e+00 0 300 3 36 44 112 114 172 227 304 493 799 1279 1921 2906 4411 6756 11010 19896 32195 45472 57335 69213 82719 95096 102976 104353 104702 103507 103914 101365 94339 81472 68515 55944 44315 30522 19138 10784 6390 4187 2962 1819 1218 774 530 330 229 158 123 88 54 44 g g 1476816 529.2 49 0.0e+00 0 300 4 39 65 72 122 168 254 339 514 797 1167 1882 2894 4370 6664 11111 19425 31382 44555 57486 69092 82589 94940 101774 103499 103019 104032 103959 102100 94983 82522 68577 57030 44489 31550 19315 10742 6779 4334 2890 1823 1191 760 467 317 224 172 127 107 66 41 ; Host name rsat ; Job started 2014-09-06.123927 ; Job done 2014-09-06.124048 ; Seconds 81.9 ; user 81.9 ; system 0.03 ; cuser 0 ; csystem 0