One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/JASPAR/jaspar_core_vertebrates_2013-11.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_vs_db_jaspar_core_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift8 ; 17 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift8 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=12; shift=8; ncol=20; --------cmAAGGTCAGrr ; Alignment reference a 0 0 0 0 0 0 0 0 139 297 715 715 0 0 0 0 715 0 220 200 c 0 0 0 0 0 0 0 0 264 201 0 0 0 0 0 715 0 0 145 133 g 0 0 0 0 0 0 0 0 154 130 0 0 715 715 0 0 0 715 200 212 t 0 0 0 0 0 0 0 0 158 87 0 0 0 0 715 0 0 0 150 170

MA0141.2_shift5 (Esrrb) 0.957 0.574 10.632 0.573 0.947 0.453 0.975 1 4 5 4 1 1 1 2.429 1
; oligos_6nt_test_vs_ctrl_m5 versus MA0141.2 (Esrrb); m=1/16; ncol2=12; w=9; offset=-3; strand=D; shift=5; score= 2.4286; -----rgsyCAAGGTCA--- ; cor=0.957; Ncor=0.574; logoDP=10.632; NIcor=0.573; NsEucl=0.947; SSD=0.453; NSW=0.975; rcor=1; rNcor=4; rlogoDP=5; rNIcor=4; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=2.429; match_rank=1 a 0 0 0 0 0 1055 673 403 260 312 3347 3590 33 12 180 9 3478 0 0 0 c 0 0 0 0 0 801 832 1212 1230 2653 32 2 2 11 43 3394 21 0 0 0 g 0 0 0 0 0 984 1352 1212 449 630 248 60 3597 3622 243 167 128 0 0 0 t 0 0 0 0 0 773 767 807 1702 51 27 6 29 16 3192 85 26 0 0 0

MA0071.1_shift7 (RORA_1) 0.913 0.632 10.808 0.628 0.926 0.886 0.951 3 3 4 3 3 3 3 3.143 2
; oligos_6nt_test_vs_ctrl_m5 versus MA0071.1 (RORA_1); m=2/16; ncol2=10; w=9; offset=-1; strand=D; shift=7; score= 3.1429; -------wwcwAGGTCA--- ; cor=0.913; Ncor=0.632; logoDP=10.808; NIcor=0.628; NsEucl=0.926; SSD=0.886; NSW=0.951; rcor=3; rNcor=3; rlogoDP=4; rNIcor=3; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=3.143; match_rank=2 a 0 0 0 0 0 0 0 15 9 6 11 21 0 0 0 0 25 0 0 0 c 0 0 0 0 0 0 0 1 1 12 2 0 0 0 0 25 0 0 0 0 g 0 0 0 0 0 0 0 2 0 4 5 4 25 25 0 0 0 0 0 0 t 0 0 0 0 0 0 0 7 15 3 7 0 0 0 25 0 0 0 0 0

MA0141.1_shift5 (Esrrb) 0.956 0.574 10.474 0.573 0.947 0.455 0.975 2 5 6 5 2 2 2 3.429 3
; oligos_6nt_test_vs_ctrl_m5 versus MA0141.1 (Esrrb); m=3/16; ncol2=12; w=9; offset=-3; strand=D; shift=5; score= 3.4286; -----rgsyCAAGGTCA--- ; cor=0.956; Ncor=0.574; logoDP=10.474; NIcor=0.573; NsEucl=0.947; SSD=0.455; NSW=0.975; rcor=2; rNcor=5; rlogoDP=6; rNIcor=5; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=3.429; match_rank=3 a 0 0 0 0 0 1054 673 420 259 310 3326 3567 32 21 182 9 3458 0 0 0 c 0 0 0 0 0 800 829 1211 1250 2664 32 2 5 12 46 3376 20 0 0 0 g 0 0 0 0 0 985 1370 1209 448 627 248 60 3586 3602 244 170 129 0 0 0 t 0 0 0 0 0 793 767 805 1693 52 50 27 31 17 3175 85 27 0 0 0

MA0592.1_shift8 (ESRRA) 0.870 0.797 11.273 0.783 0.921 1.511 0.931 5 1 2 1 4 7 5 3.571 4
; oligos_6nt_test_vs_ctrl_m5 versus MA0592.1 (ESRRA); m=4/16; ncol2=11; w=11; offset=0; strand=D; shift=8; score= 3.5714; --------yCAAGGTCAcm- ; cor=0.870; Ncor=0.797; logoDP=11.273; NIcor=0.783; NsEucl=0.921; SSD=1.511; NSW=0.931; rcor=5; rNcor=1; rlogoDP=2; rNIcor=1; rNsEucl=4; rSSD=7; rNSW=5; rank_mean=3.571; match_rank=4 a 0 0 0 0 0 0 0 0 17 18 200 198 0 0 6 0 197 23 70 0 c 0 0 0 0 0 0 0 0 118 174 2 0 0 0 0 205 1 108 54 0 g 0 0 0 0 0 0 0 0 11 15 6 10 203 207 22 3 10 44 40 0 t 0 0 0 0 0 0 0 0 62 1 0 0 5 1 180 0 0 33 44 0

MA0512.1_shift8 (Rxra) 0.853 0.782 9.135 0.742 0.917 1.660 0.925 9 2 8 2 6 10 7 6.286 5
; oligos_6nt_test_vs_ctrl_m5 versus MA0512.1 (Rxra); m=5/16; ncol2=11; w=11; offset=0; strand=D; shift=8; score= 6.2857; --------CArAGKTCAgd- ; cor=0.853; Ncor=0.782; logoDP=9.135; NIcor=0.742; NsEucl=0.917; SSD=1.660; NSW=0.925; rcor=9; rNcor=2; rlogoDP=8; rNIcor=2; rNsEucl=6; rSSD=10; rNSW=7; rank_mean=6.286; match_rank=5 a 0 0 0 0 0 0 0 0 278 4154 2623 4877 0 0 0 0 5348 1150 1640 0 c 0 0 0 0 0 0 0 0 4521 418 252 0 0 0 583 5348 0 1070 742 0 g 0 0 0 0 0 0 0 0 305 9 2473 471 5348 3882 643 0 0 2336 1569 0 t 0 0 0 0 0 0 0 0 244 767 0 0 0 1466 4122 0 0 792 1397 0

MA0258.2_shift11 (ESR2) 0.896 0.448 7.773 0.442 0.919 1.075 0.940 4 14 10 12 5 4 4 7.571 6
; oligos_6nt_test_vs_ctrl_m5 versus MA0258.2 (ESR2); m=6/16; ncol2=15; w=9; offset=3; strand=D; shift=11; score= 7.5714; -----------rGGTCAsms ; cor=0.896; Ncor=0.448; logoDP=7.773; NIcor=0.442; NsEucl=0.919; SSD=1.075; NSW=0.940; rcor=4; rNcor=14; rlogoDP=10; rNIcor=12; rNsEucl=5; rSSD=4; rNSW=4; rank_mean=7.571; match_rank=6 a 0 0 0 0 0 0 0 0 0 0 0 5410 429 59 74 0 8098 502 2092 1808 c 0 0 0 0 0 0 0 0 0 0 0 96 0 0 147 7621 1 4202 3235 2510 g 0 0 0 0 0 0 0 0 0 0 0 2563 7170 8143 989 533 57 2738 1688 2173 t 0 0 0 0 0 0 0 0 0 0 0 174 644 41 7033 89 87 801 1228 1752

MA0065.1_shift0 (PPARG::RXRA) 0.831 0.498 11.103 0.484 0.916 2.048 0.915 13 8 3 8 7 14 11 9.143 7
; oligos_6nt_test_vs_ctrl_m5 versus MA0065.1 (PPARG::RXRA); m=7/16; ncol2=20; w=12; offset=-8; strand=D; shift=0; score= 9.1429; yywrrGGTCAAAGGTCAymk ; cor=0.831; Ncor=0.498; logoDP=11.103; NIcor=0.484; NsEucl=0.916; SSD=2.048; NSW=0.915; rcor=13; rNcor=8; rlogoDP=3; rNIcor=8; rNsEucl=7; rSSD=14; rNSW=11; rank_mean=9.143; match_rank=7 a 10 7 19 13 17 0 0 0 2 41 41 39 0 0 0 2 38 10 13 7 c 12 13 4 1 0 0 0 2 37 0 0 0 0 0 2 36 1 12 15 10 g 7 8 6 27 24 41 39 0 2 0 0 2 41 39 0 1 2 4 9 12 t 12 13 12 0 0 0 2 39 0 0 0 0 0 2 39 2 0 15 4 12

MA0505.1_shift4 (Nr5a2) 0.833 0.573 9.942 0.545 0.911 1.909 0.913 12 6 7 7 9 13 12 9.429 8
; oligos_6nt_test_vs_ctrl_m5 versus MA0505.1 (Nr5a2); m=8/16; ncol2=15; w=11; offset=-4; strand=D; shift=4; score= 9.4286; ----ragtTCAAGGyCAgs- ; cor=0.833; Ncor=0.573; logoDP=9.942; NIcor=0.545; NsEucl=0.911; SSD=1.909; NSW=0.913; rcor=12; rNcor=6; rlogoDP=7; rNIcor=7; rNsEucl=9; rSSD=13; rNSW=12; rank_mean=9.429; match_rank=8 a 0 0 0 0 645 985 276 122 71 8 1685 1679 39 0 169 0 1437 271 249 0 c 0 0 0 0 224 170 198 378 351 1616 14 0 0 0 584 1568 20 345 693 0 g 0 0 0 0 634 336 990 366 23 74 0 23 1663 1702 61 12 90 740 454 0 t 0 0 0 0 199 211 238 836 1257 4 3 0 0 0 888 122 155 346 306 0

MA0160.1_shift10 (NR4A2) 0.859 0.573 8.211 0.562 0.888 1.606 0.900 7 7 9 6 16 9 14 9.714 9
; oligos_6nt_test_vs_ctrl_m5 versus MA0160.1 (NR4A2); m=9/16; ncol2=8; w=8; offset=2; strand=D; shift=10; score= 9.7143; ----------aAGGTCAc-- ; cor=0.859; Ncor=0.573; logoDP=8.211; NIcor=0.562; NsEucl=0.888; SSD=1.606; NSW=0.900; rcor=7; rNcor=7; rlogoDP=9; rNIcor=6; rNsEucl=16; rSSD=9; rNSW=14; rank_mean=9.714; match_rank=9 a 0 0 0 0 0 0 0 0 0 0 8 13 0 3 2 0 14 3 0 0 c 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 13 0 8 0 0 g 0 0 0 0 0 0 0 0 0 0 3 1 13 11 0 0 0 2 0 0 t 0 0 0 0 0 0 0 0 0 0 1 0 1 0 10 1 0 0 0 0

MA0258.1_shift9 (ESR2) 0.849 0.491 6.707 0.476 0.914 1.786 0.919 10 9 11 9 8 12 9 9.714 10
; oligos_6nt_test_vs_ctrl_m5 versus MA0258.1 (ESR2); m=10/16; ncol2=18; w=11; offset=1; strand=D; shift=9; score= 9.7143; ---------cwrGGTCAsgk ; cor=0.849; Ncor=0.491; logoDP=6.707; NIcor=0.476; NsEucl=0.914; SSD=1.786; NSW=0.919; rcor=10; rNcor=9; rlogoDP=11; rNIcor=9; rNsEucl=8; rSSD=12; rNSW=9; rank_mean=9.714; match_rank=10 a 0 0 0 0 0 0 0 0 0 78 158 186 27 18 13 0 337 49 64 52 c 0 0 0 0 0 0 0 0 0 161 51 15 0 20 19 357 1 123 63 61 g 0 0 0 0 0 0 0 0 0 63 41 154 275 319 33 0 0 113 149 147 t 0 0 0 0 0 0 0 0 0 55 107 2 55 0 292 0 19 72 81 97

MA0017.1_rc_shift3 (NR2F1_rc) 0.868 0.460 0.751 -0.135 0.909 1.339 0.926 6 12 16 16 10 5 6 10.143 11
; oligos_6nt_test_vs_ctrl_m5 versus MA0017.1_rc (NR2F1_rc); m=11/16; ncol2=14; w=9; offset=-5; strand=R; shift=3; score=10.1429; ---arGkkCAAAGkTCA--- ; cor=0.868; Ncor=0.460; logoDP=0.751; NIcor=-0.135; NsEucl=0.909; SSD=1.339; NSW=0.926; rcor=6; rNcor=12; rlogoDP=16; rNIcor=16; rNsEucl=10; rSSD=5; rNSW=6; rank_mean=10.143; match_rank=11 a 0 0 0 7 4 1 1 0 0 12 11 10 0 0 0 0 11 0 0 0 c 0 0 0 3 0 1 1 3 11 0 0 0 0 0 1 12 2 0 0 0 g 0 0 0 3 6 10 5 4 0 0 2 3 13 7 0 0 0 0 0 0 t 0 0 0 0 3 1 6 6 2 1 0 0 0 6 12 1 0 0 0 0

MA0065.2_shift2 (PPARG::RXRA) 0.858 0.429 4.750 0.402 0.906 1.432 0.920 8 15 13 15 11 6 8 10.857 12
; oligos_6nt_test_vs_ctrl_m5 versus MA0065.2 (PPARG::RXRA); m=12/16; ncol2=15; w=9; offset=-6; strand=D; shift=2; score=10.8571; --strGGgcArAGGkcA--- ; cor=0.858; Ncor=0.429; logoDP=4.750; NIcor=0.402; NsEucl=0.906; SSD=1.432; NSW=0.920; rcor=8; rNcor=15; rlogoDP=13; rNIcor=15; rNsEucl=11; rSSD=6; rNSW=8; rank_mean=10.857; match_rank=12 a 0 0 94 101 390 100 139 145 71 819 522 713 82 41 22 54 676 0 0 0 c 0 0 317 166 23 3 15 129 547 21 48 5 2 9 99 555 58 0 0 0 g 0 0 320 127 368 671 674 395 179 15 270 137 767 693 263 144 47 0 0 0 t 0 0 126 464 79 87 34 193 66 8 23 9 12 120 479 109 81 0 0 0

MA0115.1_shift2 (NR1H2::RXRA) 0.797 0.487 13.304 0.469 0.893 2.754 0.875 15 10 1 10 15 16 16 11.857 13
; oligos_6nt_test_vs_ctrl_m5 versus MA0115.1 (NR1H2::RXRA); m=13/16; ncol2=17; w=11; offset=-6; strand=D; shift=2; score=11.8571; --AAAGGTCAAAGGTCAAc- ; cor=0.797; Ncor=0.487; logoDP=13.304; NIcor=0.469; NsEucl=0.893; SSD=2.754; NSW=0.875; rcor=15; rNcor=10; rlogoDP=1; rNIcor=10; rNsEucl=15; rSSD=16; rNSW=16; rank_mean=11.857; match_rank=13 a 0 0 17 17 20 0 0 0 0 25 24 25 0 0 0 0 25 20 0 0 c 0 0 5 1 0 0 0 0 25 0 0 0 0 0 0 25 0 1 15 0 g 0 0 0 5 5 25 24 0 0 0 0 0 25 25 0 0 0 2 6 0 t 0 0 3 2 0 0 1 25 0 0 1 0 0 0 25 0 0 2 4 0

MA0504.1_shift2 (NR2C2) 0.845 0.423 6.396 0.402 0.903 1.517 0.916 11 16 12 14 13 8 10 12.000 14
; oligos_6nt_test_vs_ctrl_m5 versus MA0504.1 (NR2C2); m=14/16; ncol2=15; w=9; offset=-6; strand=D; shift=2; score= 12; --mgrGGTCArAGGTCA--- ; cor=0.845; Ncor=0.423; logoDP=6.396; NIcor=0.402; NsEucl=0.903; SSD=1.517; NSW=0.916; rcor=11; rNcor=16; rlogoDP=12; rNIcor=14; rNsEucl=13; rSSD=8; rNSW=10; rank_mean=12.000; match_rank=14 a 0 0 129 82 193 0 10 3 6 343 187 324 10 11 0 9 290 0 0 0 c 0 0 126 70 6 8 3 0 309 0 0 0 0 0 27 315 0 0 0 0 g 0 0 90 221 195 366 355 79 54 48 208 71 385 336 89 35 92 0 0 0 t 0 0 50 22 1 21 27 313 26 4 0 0 0 48 279 36 13 0 0 0

MA0114.1_shift4 (HNF4A) 0.818 0.460 3.992 0.424 0.895 1.782 0.901 14 11 15 13 14 11 13 13.000 15
; oligos_6nt_test_vs_ctrl_m5 versus MA0114.1 (HNF4A); m=15/16; ncol2=13; w=9; offset=-4; strand=D; shift=4; score= 13; ----rGgbCAAAGkyCa--- ; cor=0.818; Ncor=0.460; logoDP=3.992; NIcor=0.424; NsEucl=0.895; SSD=1.782; NSW=0.901; rcor=14; rNcor=11; rlogoDP=15; rNIcor=13; rNsEucl=14; rSSD=11; rNSW=13; rank_mean=13.000; match_rank=15 a 0 0 0 0 28 2 12 5 3 59 53 56 4 6 3 4 42 0 0 0 c 0 0 0 0 7 2 4 23 51 1 2 1 4 2 22 49 7 0 0 0 g 0 0 0 0 27 56 35 20 4 3 10 8 58 33 11 5 10 0 0 0 t 0 0 0 0 5 7 16 19 9 4 2 2 1 26 31 9 8 0 0 0

MA0112.2_shift6 (ESR1) 0.751 0.451 4.613 0.445 0.904 2.672 0.889 16 13 14 11 12 15 15 13.714 16
; oligos_6nt_test_vs_ctrl_m5 versus MA0112.2 (ESR1); m=16/16; ncol2=20; w=12; offset=-2; strand=D; shift=6; score=13.7143; ------vkscmaGGtCAccc ; cor=0.751; Ncor=0.451; logoDP=4.613; NIcor=0.445; NsEucl=0.904; SSD=2.672; NSW=0.889; rcor=16; rNcor=13; rlogoDP=14; rNIcor=11; rNsEucl=12; rSSD=15; rNSW=15; rank_mean=13.714; match_rank=16 a 0 0 0 0 0 0 122 107 64 83 134 308 36 19 33 4 398 58 63 64 c 0 0 0 0 0 0 120 80 173 229 232 28 8 18 41 394 13 250 276 258 g 0 0 0 0 0 0 154 164 149 65 47 89 387 420 91 53 27 107 53 97 t 0 0 0 0 0 0 71 117 82 93 57 48 43 18 310 24 37 60 83 56

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift8 (oligos_6nt_test_vs_ctrl_m5)																	; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=12; shift=8; ncol=20; --------cmAAGGTCAGrr ; Alignment reference a 0 0 0 0 0 0 0 0 139 297 715 715 0 0 0 0 715 0 220 200 c 0 0 0 0 0 0 0 0 264 201 0 0 0 0 0 715 0 0 145 133 g 0 0 0 0 0 0 0 0 154 130 0 0 715 715 0 0 0 715 200 212 t 0 0 0 0 0 0 0 0 158 87 0 0 0 0 715 0 0 0 150 170
MA0141.2_shift5 (Esrrb)	0.957	0.574	10.632	0.573	0.947	0.453	0.975	1	4	5	4	1	1	1	2.429	1	; oligos_6nt_test_vs_ctrl_m5 versus MA0141.2 (Esrrb); m=1/16; ncol2=12; w=9; offset=-3; strand=D; shift=5; score= 2.4286; -----rgsyCAAGGTCA--- ; cor=0.957; Ncor=0.574; logoDP=10.632; NIcor=0.573; NsEucl=0.947; SSD=0.453; NSW=0.975; rcor=1; rNcor=4; rlogoDP=5; rNIcor=4; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=2.429; match_rank=1 a 0 0 0 0 0 1055 673 403 260 312 3347 3590 33 12 180 9 3478 0 0 0 c 0 0 0 0 0 801 832 1212 1230 2653 32 2 2 11 43 3394 21 0 0 0 g 0 0 0 0 0 984 1352 1212 449 630 248 60 3597 3622 243 167 128 0 0 0 t 0 0 0 0 0 773 767 807 1702 51 27 6 29 16 3192 85 26 0 0 0
MA0071.1_shift7 (RORA_1)	0.913	0.632	10.808	0.628	0.926	0.886	0.951	3	3	4	3	3	3	3	3.143	2	; oligos_6nt_test_vs_ctrl_m5 versus MA0071.1 (RORA_1); m=2/16; ncol2=10; w=9; offset=-1; strand=D; shift=7; score= 3.1429; -------wwcwAGGTCA--- ; cor=0.913; Ncor=0.632; logoDP=10.808; NIcor=0.628; NsEucl=0.926; SSD=0.886; NSW=0.951; rcor=3; rNcor=3; rlogoDP=4; rNIcor=3; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=3.143; match_rank=2 a 0 0 0 0 0 0 0 15 9 6 11 21 0 0 0 0 25 0 0 0 c 0 0 0 0 0 0 0 1 1 12 2 0 0 0 0 25 0 0 0 0 g 0 0 0 0 0 0 0 2 0 4 5 4 25 25 0 0 0 0 0 0 t 0 0 0 0 0 0 0 7 15 3 7 0 0 0 25 0 0 0 0 0
MA0141.1_shift5 (Esrrb)	0.956	0.574	10.474	0.573	0.947	0.455	0.975	2	5	6	5	2	2	2	3.429	3	; oligos_6nt_test_vs_ctrl_m5 versus MA0141.1 (Esrrb); m=3/16; ncol2=12; w=9; offset=-3; strand=D; shift=5; score= 3.4286; -----rgsyCAAGGTCA--- ; cor=0.956; Ncor=0.574; logoDP=10.474; NIcor=0.573; NsEucl=0.947; SSD=0.455; NSW=0.975; rcor=2; rNcor=5; rlogoDP=6; rNIcor=5; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=3.429; match_rank=3 a 0 0 0 0 0 1054 673 420 259 310 3326 3567 32 21 182 9 3458 0 0 0 c 0 0 0 0 0 800 829 1211 1250 2664 32 2 5 12 46 3376 20 0 0 0 g 0 0 0 0 0 985 1370 1209 448 627 248 60 3586 3602 244 170 129 0 0 0 t 0 0 0 0 0 793 767 805 1693 52 50 27 31 17 3175 85 27 0 0 0
MA0592.1_shift8 (ESRRA)	0.870	0.797	11.273	0.783	0.921	1.511	0.931	5	1	2	1	4	7	5	3.571	4	; oligos_6nt_test_vs_ctrl_m5 versus MA0592.1 (ESRRA); m=4/16; ncol2=11; w=11; offset=0; strand=D; shift=8; score= 3.5714; --------yCAAGGTCAcm- ; cor=0.870; Ncor=0.797; logoDP=11.273; NIcor=0.783; NsEucl=0.921; SSD=1.511; NSW=0.931; rcor=5; rNcor=1; rlogoDP=2; rNIcor=1; rNsEucl=4; rSSD=7; rNSW=5; rank_mean=3.571; match_rank=4 a 0 0 0 0 0 0 0 0 17 18 200 198 0 0 6 0 197 23 70 0 c 0 0 0 0 0 0 0 0 118 174 2 0 0 0 0 205 1 108 54 0 g 0 0 0 0 0 0 0 0 11 15 6 10 203 207 22 3 10 44 40 0 t 0 0 0 0 0 0 0 0 62 1 0 0 5 1 180 0 0 33 44 0
MA0512.1_shift8 (Rxra)	0.853	0.782	9.135	0.742	0.917	1.660	0.925	9	2	8	2	6	10	7	6.286	5	; oligos_6nt_test_vs_ctrl_m5 versus MA0512.1 (Rxra); m=5/16; ncol2=11; w=11; offset=0; strand=D; shift=8; score= 6.2857; --------CArAGKTCAgd- ; cor=0.853; Ncor=0.782; logoDP=9.135; NIcor=0.742; NsEucl=0.917; SSD=1.660; NSW=0.925; rcor=9; rNcor=2; rlogoDP=8; rNIcor=2; rNsEucl=6; rSSD=10; rNSW=7; rank_mean=6.286; match_rank=5 a 0 0 0 0 0 0 0 0 278 4154 2623 4877 0 0 0 0 5348 1150 1640 0 c 0 0 0 0 0 0 0 0 4521 418 252 0 0 0 583 5348 0 1070 742 0 g 0 0 0 0 0 0 0 0 305 9 2473 471 5348 3882 643 0 0 2336 1569 0 t 0 0 0 0 0 0 0 0 244 767 0 0 0 1466 4122 0 0 792 1397 0
MA0258.2_shift11 (ESR2)	0.896	0.448	7.773	0.442	0.919	1.075	0.940	4	14	10	12	5	4	4	7.571	6	; oligos_6nt_test_vs_ctrl_m5 versus MA0258.2 (ESR2); m=6/16; ncol2=15; w=9; offset=3; strand=D; shift=11; score= 7.5714; -----------rGGTCAsms ; cor=0.896; Ncor=0.448; logoDP=7.773; NIcor=0.442; NsEucl=0.919; SSD=1.075; NSW=0.940; rcor=4; rNcor=14; rlogoDP=10; rNIcor=12; rNsEucl=5; rSSD=4; rNSW=4; rank_mean=7.571; match_rank=6 a 0 0 0 0 0 0 0 0 0 0 0 5410 429 59 74 0 8098 502 2092 1808 c 0 0 0 0 0 0 0 0 0 0 0 96 0 0 147 7621 1 4202 3235 2510 g 0 0 0 0 0 0 0 0 0 0 0 2563 7170 8143 989 533 57 2738 1688 2173 t 0 0 0 0 0 0 0 0 0 0 0 174 644 41 7033 89 87 801 1228 1752
MA0065.1_shift0 (PPARG::RXRA)	0.831	0.498	11.103	0.484	0.916	2.048	0.915	13	8	3	8	7	14	11	9.143	7	; oligos_6nt_test_vs_ctrl_m5 versus MA0065.1 (PPARG::RXRA); m=7/16; ncol2=20; w=12; offset=-8; strand=D; shift=0; score= 9.1429; yywrrGGTCAAAGGTCAymk ; cor=0.831; Ncor=0.498; logoDP=11.103; NIcor=0.484; NsEucl=0.916; SSD=2.048; NSW=0.915; rcor=13; rNcor=8; rlogoDP=3; rNIcor=8; rNsEucl=7; rSSD=14; rNSW=11; rank_mean=9.143; match_rank=7 a 10 7 19 13 17 0 0 0 2 41 41 39 0 0 0 2 38 10 13 7 c 12 13 4 1 0 0 0 2 37 0 0 0 0 0 2 36 1 12 15 10 g 7 8 6 27 24 41 39 0 2 0 0 2 41 39 0 1 2 4 9 12 t 12 13 12 0 0 0 2 39 0 0 0 0 0 2 39 2 0 15 4 12
MA0505.1_shift4 (Nr5a2)	0.833	0.573	9.942	0.545	0.911	1.909	0.913	12	6	7	7	9	13	12	9.429	8	; oligos_6nt_test_vs_ctrl_m5 versus MA0505.1 (Nr5a2); m=8/16; ncol2=15; w=11; offset=-4; strand=D; shift=4; score= 9.4286; ----ragtTCAAGGyCAgs- ; cor=0.833; Ncor=0.573; logoDP=9.942; NIcor=0.545; NsEucl=0.911; SSD=1.909; NSW=0.913; rcor=12; rNcor=6; rlogoDP=7; rNIcor=7; rNsEucl=9; rSSD=13; rNSW=12; rank_mean=9.429; match_rank=8 a 0 0 0 0 645 985 276 122 71 8 1685 1679 39 0 169 0 1437 271 249 0 c 0 0 0 0 224 170 198 378 351 1616 14 0 0 0 584 1568 20 345 693 0 g 0 0 0 0 634 336 990 366 23 74 0 23 1663 1702 61 12 90 740 454 0 t 0 0 0 0 199 211 238 836 1257 4 3 0 0 0 888 122 155 346 306 0
MA0160.1_shift10 (NR4A2)	0.859	0.573	8.211	0.562	0.888	1.606	0.900	7	7	9	6	16	9	14	9.714	9	; oligos_6nt_test_vs_ctrl_m5 versus MA0160.1 (NR4A2); m=9/16; ncol2=8; w=8; offset=2; strand=D; shift=10; score= 9.7143; ----------aAGGTCAc-- ; cor=0.859; Ncor=0.573; logoDP=8.211; NIcor=0.562; NsEucl=0.888; SSD=1.606; NSW=0.900; rcor=7; rNcor=7; rlogoDP=9; rNIcor=6; rNsEucl=16; rSSD=9; rNSW=14; rank_mean=9.714; match_rank=9 a 0 0 0 0 0 0 0 0 0 0 8 13 0 3 2 0 14 3 0 0 c 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 13 0 8 0 0 g 0 0 0 0 0 0 0 0 0 0 3 1 13 11 0 0 0 2 0 0 t 0 0 0 0 0 0 0 0 0 0 1 0 1 0 10 1 0 0 0 0
MA0258.1_shift9 (ESR2)	0.849	0.491	6.707	0.476	0.914	1.786	0.919	10	9	11	9	8	12	9	9.714	10	; oligos_6nt_test_vs_ctrl_m5 versus MA0258.1 (ESR2); m=10/16; ncol2=18; w=11; offset=1; strand=D; shift=9; score= 9.7143; ---------cwrGGTCAsgk ; cor=0.849; Ncor=0.491; logoDP=6.707; NIcor=0.476; NsEucl=0.914; SSD=1.786; NSW=0.919; rcor=10; rNcor=9; rlogoDP=11; rNIcor=9; rNsEucl=8; rSSD=12; rNSW=9; rank_mean=9.714; match_rank=10 a 0 0 0 0 0 0 0 0 0 78 158 186 27 18 13 0 337 49 64 52 c 0 0 0 0 0 0 0 0 0 161 51 15 0 20 19 357 1 123 63 61 g 0 0 0 0 0 0 0 0 0 63 41 154 275 319 33 0 0 113 149 147 t 0 0 0 0 0 0 0 0 0 55 107 2 55 0 292 0 19 72 81 97
MA0017.1_rc_shift3 (NR2F1_rc)	0.868	0.460	0.751	-0.135	0.909	1.339	0.926	6	12	16	16	10	5	6	10.143	11	; oligos_6nt_test_vs_ctrl_m5 versus MA0017.1_rc (NR2F1_rc); m=11/16; ncol2=14; w=9; offset=-5; strand=R; shift=3; score=10.1429; ---arGkkCAAAGkTCA--- ; cor=0.868; Ncor=0.460; logoDP=0.751; NIcor=-0.135; NsEucl=0.909; SSD=1.339; NSW=0.926; rcor=6; rNcor=12; rlogoDP=16; rNIcor=16; rNsEucl=10; rSSD=5; rNSW=6; rank_mean=10.143; match_rank=11 a 0 0 0 7 4 1 1 0 0 12 11 10 0 0 0 0 11 0 0 0 c 0 0 0 3 0 1 1 3 11 0 0 0 0 0 1 12 2 0 0 0 g 0 0 0 3 6 10 5 4 0 0 2 3 13 7 0 0 0 0 0 0 t 0 0 0 0 3 1 6 6 2 1 0 0 0 6 12 1 0 0 0 0
MA0065.2_shift2 (PPARG::RXRA)	0.858	0.429	4.750	0.402	0.906	1.432	0.920	8	15	13	15	11	6	8	10.857	12	; oligos_6nt_test_vs_ctrl_m5 versus MA0065.2 (PPARG::RXRA); m=12/16; ncol2=15; w=9; offset=-6; strand=D; shift=2; score=10.8571; --strGGgcArAGGkcA--- ; cor=0.858; Ncor=0.429; logoDP=4.750; NIcor=0.402; NsEucl=0.906; SSD=1.432; NSW=0.920; rcor=8; rNcor=15; rlogoDP=13; rNIcor=15; rNsEucl=11; rSSD=6; rNSW=8; rank_mean=10.857; match_rank=12 a 0 0 94 101 390 100 139 145 71 819 522 713 82 41 22 54 676 0 0 0 c 0 0 317 166 23 3 15 129 547 21 48 5 2 9 99 555 58 0 0 0 g 0 0 320 127 368 671 674 395 179 15 270 137 767 693 263 144 47 0 0 0 t 0 0 126 464 79 87 34 193 66 8 23 9 12 120 479 109 81 0 0 0
MA0115.1_shift2 (NR1H2::RXRA)	0.797	0.487	13.304	0.469	0.893	2.754	0.875	15	10	1	10	15	16	16	11.857	13	; oligos_6nt_test_vs_ctrl_m5 versus MA0115.1 (NR1H2::RXRA); m=13/16; ncol2=17; w=11; offset=-6; strand=D; shift=2; score=11.8571; --AAAGGTCAAAGGTCAAc- ; cor=0.797; Ncor=0.487; logoDP=13.304; NIcor=0.469; NsEucl=0.893; SSD=2.754; NSW=0.875; rcor=15; rNcor=10; rlogoDP=1; rNIcor=10; rNsEucl=15; rSSD=16; rNSW=16; rank_mean=11.857; match_rank=13 a 0 0 17 17 20 0 0 0 0 25 24 25 0 0 0 0 25 20 0 0 c 0 0 5 1 0 0 0 0 25 0 0 0 0 0 0 25 0 1 15 0 g 0 0 0 5 5 25 24 0 0 0 0 0 25 25 0 0 0 2 6 0 t 0 0 3 2 0 0 1 25 0 0 1 0 0 0 25 0 0 2 4 0
MA0504.1_shift2 (NR2C2)	0.845	0.423	6.396	0.402	0.903	1.517	0.916	11	16	12	14	13	8	10	12.000	14	; oligos_6nt_test_vs_ctrl_m5 versus MA0504.1 (NR2C2); m=14/16; ncol2=15; w=9; offset=-6; strand=D; shift=2; score= 12; --mgrGGTCArAGGTCA--- ; cor=0.845; Ncor=0.423; logoDP=6.396; NIcor=0.402; NsEucl=0.903; SSD=1.517; NSW=0.916; rcor=11; rNcor=16; rlogoDP=12; rNIcor=14; rNsEucl=13; rSSD=8; rNSW=10; rank_mean=12.000; match_rank=14 a 0 0 129 82 193 0 10 3 6 343 187 324 10 11 0 9 290 0 0 0 c 0 0 126 70 6 8 3 0 309 0 0 0 0 0 27 315 0 0 0 0 g 0 0 90 221 195 366 355 79 54 48 208 71 385 336 89 35 92 0 0 0 t 0 0 50 22 1 21 27 313 26 4 0 0 0 48 279 36 13 0 0 0
MA0114.1_shift4 (HNF4A)	0.818	0.460	3.992	0.424	0.895	1.782	0.901	14	11	15	13	14	11	13	13.000	15	; oligos_6nt_test_vs_ctrl_m5 versus MA0114.1 (HNF4A); m=15/16; ncol2=13; w=9; offset=-4; strand=D; shift=4; score= 13; ----rGgbCAAAGkyCa--- ; cor=0.818; Ncor=0.460; logoDP=3.992; NIcor=0.424; NsEucl=0.895; SSD=1.782; NSW=0.901; rcor=14; rNcor=11; rlogoDP=15; rNIcor=13; rNsEucl=14; rSSD=11; rNSW=13; rank_mean=13.000; match_rank=15 a 0 0 0 0 28 2 12 5 3 59 53 56 4 6 3 4 42 0 0 0 c 0 0 0 0 7 2 4 23 51 1 2 1 4 2 22 49 7 0 0 0 g 0 0 0 0 27 56 35 20 4 3 10 8 58 33 11 5 10 0 0 0 t 0 0 0 0 5 7 16 19 9 4 2 2 1 26 31 9 8 0 0 0
MA0112.2_shift6 (ESR1)	0.751	0.451	4.613	0.445	0.904	2.672	0.889	16	13	14	11	12	15	15	13.714	16	; oligos_6nt_test_vs_ctrl_m5 versus MA0112.2 (ESR1); m=16/16; ncol2=20; w=12; offset=-2; strand=D; shift=6; score=13.7143; ------vkscmaGGtCAccc ; cor=0.751; Ncor=0.451; logoDP=4.613; NIcor=0.445; NsEucl=0.904; SSD=2.672; NSW=0.889; rcor=16; rNcor=13; rlogoDP=14; rNIcor=11; rNsEucl=12; rSSD=15; rNSW=15; rank_mean=13.714; match_rank=16 a 0 0 0 0 0 0 122 107 64 83 134 308 36 19 33 4 398 58 63 64 c 0 0 0 0 0 0 120 80 173 229 232 28 8 18 41 394 13 250 276 258 g 0 0 0 0 0 0 154 164 149 65 47 89 387 420 91 53 27 107 53 97 t 0 0 0 0 0 0 71 117 82 93 57 48 43 18 310 24 37 60 83 56