Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_6nt_test_vs_ctrl_m5_shift8 (oligos_6nt_test_vs_ctrl_m5) |
|
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=12; shift=8; ncol=20; --------cmAAGGTCAGrr
; Alignment reference
a 0 0 0 0 0 0 0 0 139 297 715 715 0 0 0 0 715 0 220 200
c 0 0 0 0 0 0 0 0 264 201 0 0 0 0 0 715 0 0 145 133
g 0 0 0 0 0 0 0 0 154 130 0 0 715 715 0 0 0 715 200 212
t 0 0 0 0 0 0 0 0 158 87 0 0 0 0 715 0 0 0 150 170
|
MA0141.2_shift5 (Esrrb) |
|
0.957 |
0.574 |
10.632 |
0.573 |
0.947 |
0.453 |
0.975 |
1 |
9 |
5 |
5 |
1 |
1 |
1 |
3.286 |
1 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0141.2 (Esrrb); m=1/16; ncol2=12; w=9; offset=-3; strand=D; shift=5; score= 3.2857; -----rgsyCAAGGTCA---
; cor=0.957; Ncor=0.574; logoDP=10.632; NIcor=0.573; NsEucl=0.947; SSD=0.453; NSW=0.975; rcor=1; rNcor=9; rlogoDP=5; rNIcor=5; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=3.286; match_rank=1
a 0 0 0 0 0 1055 673 403 260 312 3347 3590 33 12 180 9 3478 0 0 0
c 0 0 0 0 0 801 832 1212 1230 2653 32 2 2 11 43 3394 21 0 0 0
g 0 0 0 0 0 984 1352 1212 449 630 248 60 3597 3622 243 167 128 0 0 0
t 0 0 0 0 0 773 767 807 1702 51 27 6 29 16 3192 85 26 0 0 0
|
MA0071.1_shift7 (RORA_1) |
|
0.913 |
0.632 |
10.808 |
0.628 |
0.926 |
0.886 |
0.951 |
3 |
5 |
4 |
4 |
5 |
3 |
3 |
3.857 |
2 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0071.1 (RORA_1); m=2/16; ncol2=10; w=9; offset=-1; strand=D; shift=7; score= 3.8571; -------wwcwAGGTCA---
; cor=0.913; Ncor=0.632; logoDP=10.808; NIcor=0.628; NsEucl=0.926; SSD=0.886; NSW=0.951; rcor=3; rNcor=5; rlogoDP=4; rNIcor=4; rNsEucl=5; rSSD=3; rNSW=3; rank_mean=3.857; match_rank=2
a 0 0 0 0 0 0 0 15 9 6 11 21 0 0 0 0 25 0 0 0
c 0 0 0 0 0 0 0 1 1 12 2 0 0 0 0 25 0 0 0 0
g 0 0 0 0 0 0 0 2 0 4 5 4 25 25 0 0 0 0 0 0
t 0 0 0 0 0 0 0 7 15 3 7 0 0 0 25 0 0 0 0 0
|
MA0141.1_shift5 (Esrrb) |
|
0.956 |
0.574 |
10.474 |
0.573 |
0.947 |
0.455 |
0.975 |
2 |
10 |
7 |
6 |
2 |
2 |
2 |
4.429 |
3 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0141.1 (Esrrb); m=3/16; ncol2=12; w=9; offset=-3; strand=D; shift=5; score= 4.4286; -----rgsyCAAGGTCA---
; cor=0.956; Ncor=0.574; logoDP=10.474; NIcor=0.573; NsEucl=0.947; SSD=0.455; NSW=0.975; rcor=2; rNcor=10; rlogoDP=7; rNIcor=6; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=4.429; match_rank=3
a 0 0 0 0 0 1054 673 420 259 310 3326 3567 32 21 182 9 3458 0 0 0
c 0 0 0 0 0 800 829 1211 1250 2664 32 2 5 12 46 3376 20 0 0 0
g 0 0 0 0 0 985 1370 1209 448 627 248 60 3586 3602 244 170 129 0 0 0
t 0 0 0 0 0 793 767 805 1693 52 50 27 31 17 3175 85 27 0 0 0
|
MA0592.1_shift8 (ESRRA) |
|
0.870 |
0.797 |
11.273 |
0.783 |
0.921 |
1.511 |
0.931 |
6 |
1 |
2 |
1 |
9 |
10 |
6 |
5.000 |
4 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0592.1 (ESRRA); m=4/16; ncol2=11; w=11; offset=0; strand=D; shift=8; score= 5; --------yCAAGGTCAcm-
; cor=0.870; Ncor=0.797; logoDP=11.273; NIcor=0.783; NsEucl=0.921; SSD=1.511; NSW=0.931; rcor=6; rNcor=1; rlogoDP=2; rNIcor=1; rNsEucl=9; rSSD=10; rNSW=6; rank_mean=5.000; match_rank=4
a 0 0 0 0 0 0 0 0 17 18 200 198 0 0 6 0 197 23 70 0
c 0 0 0 0 0 0 0 0 118 174 2 0 0 0 0 205 1 108 54 0
g 0 0 0 0 0 0 0 0 11 15 6 10 203 207 22 3 10 44 40 0
t 0 0 0 0 0 0 0 0 62 1 0 0 5 1 180 0 0 33 44 0
|
MA0512.1_shift8 (Rxra) |
|
0.853 |
0.782 |
9.135 |
0.742 |
0.917 |
1.660 |
0.925 |
13 |
2 |
13 |
2 |
12 |
14 |
11 |
9.571 |
5 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0512.1 (Rxra); m=5/16; ncol2=11; w=11; offset=0; strand=D; shift=8; score= 9.5714; --------CArAGKTCAgd-
; cor=0.853; Ncor=0.782; logoDP=9.135; NIcor=0.742; NsEucl=0.917; SSD=1.660; NSW=0.925; rcor=13; rNcor=2; rlogoDP=13; rNIcor=2; rNsEucl=12; rSSD=14; rNSW=11; rank_mean=9.571; match_rank=5
a 0 0 0 0 0 0 0 0 278 4154 2623 4877 0 0 0 0 5348 1150 1640 0
c 0 0 0 0 0 0 0 0 4521 418 252 0 0 0 583 5348 0 1070 742 0
g 0 0 0 0 0 0 0 0 305 9 2473 471 5348 3882 643 0 0 2336 1569 0
t 0 0 0 0 0 0 0 0 244 767 0 0 0 1466 4122 0 0 792 1397 0
|
MA0258.2_shift11 (ESR2) |
|
0.896 |
0.448 |
7.773 |
0.442 |
0.919 |
1.075 |
0.940 |
5 |
38 |
18 |
23 |
11 |
4 |
4 |
14.714 |
10 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0258.2 (ESR2); m=6/16; ncol2=15; w=9; offset=3; strand=D; shift=11; score=14.7143; -----------rGGTCAsms
; cor=0.896; Ncor=0.448; logoDP=7.773; NIcor=0.442; NsEucl=0.919; SSD=1.075; NSW=0.940; rcor=5; rNcor=38; rlogoDP=18; rNIcor=23; rNsEucl=11; rSSD=4; rNSW=4; rank_mean=14.714; match_rank=10
a 0 0 0 0 0 0 0 0 0 0 0 5410 429 59 74 0 8098 502 2092 1808
c 0 0 0 0 0 0 0 0 0 0 0 96 0 0 147 7621 1 4202 3235 2510
g 0 0 0 0 0 0 0 0 0 0 0 2563 7170 8143 989 533 57 2738 1688 2173
t 0 0 0 0 0 0 0 0 0 0 0 174 644 41 7033 89 87 801 1228 1752
|
MA0505.1_shift4 (Nr5a2) |
|
0.833 |
0.573 |
9.942 |
0.545 |
0.911 |
1.909 |
0.913 |
22 |
11 |
11 |
9 |
23 |
18 |
18 |
16.000 |
11 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0505.1 (Nr5a2); m=7/16; ncol2=15; w=11; offset=-4; strand=D; shift=4; score= 16; ----ragtTCAAGGyCAgs-
; cor=0.833; Ncor=0.573; logoDP=9.942; NIcor=0.545; NsEucl=0.911; SSD=1.909; NSW=0.913; rcor=22; rNcor=11; rlogoDP=11; rNIcor=9; rNsEucl=23; rSSD=18; rNSW=18; rank_mean=16.000; match_rank=11
a 0 0 0 0 645 985 276 122 71 8 1685 1679 39 0 169 0 1437 271 249 0
c 0 0 0 0 224 170 198 378 351 1616 14 0 0 0 584 1568 20 345 693 0
g 0 0 0 0 634 336 990 366 23 74 0 23 1663 1702 61 12 90 740 454 0
t 0 0 0 0 199 211 238 836 1257 4 3 0 0 0 888 122 155 346 306 0
|
MA0065.1_shift0 (PPARG::RXRA) |
|
0.831 |
0.498 |
11.103 |
0.484 |
0.916 |
2.048 |
0.915 |
24 |
23 |
3 |
15 |
14 |
20 |
16 |
16.429 |
12 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0065.1 (PPARG::RXRA); m=8/16; ncol2=20; w=12; offset=-8; strand=D; shift=0; score=16.4286; yywrrGGTCAAAGGTCAymk
; cor=0.831; Ncor=0.498; logoDP=11.103; NIcor=0.484; NsEucl=0.916; SSD=2.048; NSW=0.915; rcor=24; rNcor=23; rlogoDP=3; rNIcor=15; rNsEucl=14; rSSD=20; rNSW=16; rank_mean=16.429; match_rank=12
a 10 7 19 13 17 0 0 0 2 41 41 39 0 0 0 2 38 10 13 7
c 12 13 4 1 0 0 0 2 37 0 0 0 0 0 2 36 1 12 15 10
g 7 8 6 27 24 41 39 0 2 0 0 2 41 39 0 1 2 4 9 12
t 12 13 12 0 0 0 2 39 0 0 0 0 0 2 39 2 0 15 4 12
|
MA0258.1_shift9 (ESR2) |
|
0.849 |
0.491 |
6.707 |
0.476 |
0.914 |
1.786 |
0.919 |
14 |
27 |
23 |
18 |
18 |
17 |
13 |
18.571 |
13 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0258.1 (ESR2); m=9/16; ncol2=18; w=11; offset=1; strand=D; shift=9; score=18.5714; ---------cwrGGTCAsgk
; cor=0.849; Ncor=0.491; logoDP=6.707; NIcor=0.476; NsEucl=0.914; SSD=1.786; NSW=0.919; rcor=14; rNcor=27; rlogoDP=23; rNIcor=18; rNsEucl=18; rSSD=17; rNSW=13; rank_mean=18.571; match_rank=13
a 0 0 0 0 0 0 0 0 0 78 158 186 27 18 13 0 337 49 64 52
c 0 0 0 0 0 0 0 0 0 161 51 15 0 20 19 357 1 123 63 61
g 0 0 0 0 0 0 0 0 0 63 41 154 275 319 33 0 0 113 149 147
t 0 0 0 0 0 0 0 0 0 55 107 2 55 0 292 0 19 72 81 97
|
MA0160.1_shift10 (NR4A2) |
|
0.859 |
0.573 |
8.211 |
0.562 |
0.888 |
1.606 |
0.900 |
9 |
12 |
16 |
8 |
47 |
13 |
26 |
18.714 |
14 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0160.1 (NR4A2); m=10/16; ncol2=8; w=8; offset=2; strand=D; shift=10; score=18.7143; ----------aAGGTCAc--
; cor=0.859; Ncor=0.573; logoDP=8.211; NIcor=0.562; NsEucl=0.888; SSD=1.606; NSW=0.900; rcor=9; rNcor=12; rlogoDP=16; rNIcor=8; rNsEucl=47; rSSD=13; rNSW=26; rank_mean=18.714; match_rank=14
a 0 0 0 0 0 0 0 0 0 0 8 13 0 3 2 0 14 3 0 0
c 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 13 0 8 0 0
g 0 0 0 0 0 0 0 0 0 0 3 1 13 11 0 0 0 2 0 0
t 0 0 0 0 0 0 0 0 0 0 1 0 1 0 10 1 0 0 0 0
|
MA0065.2_shift2 (PPARG::RXRA) |
|
0.858 |
0.429 |
4.750 |
0.402 |
0.906 |
1.432 |
0.920 |
10 |
43 |
34 |
31 |
29 |
7 |
12 |
23.714 |
20 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0065.2 (PPARG::RXRA); m=11/16; ncol2=15; w=9; offset=-6; strand=D; shift=2; score=23.7143; --strGGgcArAGGkcA---
; cor=0.858; Ncor=0.429; logoDP=4.750; NIcor=0.402; NsEucl=0.906; SSD=1.432; NSW=0.920; rcor=10; rNcor=43; rlogoDP=34; rNIcor=31; rNsEucl=29; rSSD=7; rNSW=12; rank_mean=23.714; match_rank=20
a 0 0 94 101 390 100 139 145 71 819 522 713 82 41 22 54 676 0 0 0
c 0 0 317 166 23 3 15 129 547 21 48 5 2 9 99 555 58 0 0 0
g 0 0 320 127 368 671 674 395 179 15 270 137 767 693 263 144 47 0 0 0
t 0 0 126 464 79 87 34 193 66 8 23 9 12 120 479 109 81 0 0 0
|
MA0017.1_rc_shift3 (NR2F1_rc) |
|
0.868 |
0.460 |
0.751 |
-0.135 |
0.909 |
1.339 |
0.926 |
7 |
35 |
46 |
48 |
24 |
5 |
10 |
25.000 |
23 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0017.1_rc (NR2F1_rc); m=12/16; ncol2=14; w=9; offset=-5; strand=R; shift=3; score= 25; ---arGkkCAAAGkTCA---
; cor=0.868; Ncor=0.460; logoDP=0.751; NIcor=-0.135; NsEucl=0.909; SSD=1.339; NSW=0.926; rcor=7; rNcor=35; rlogoDP=46; rNIcor=48; rNsEucl=24; rSSD=5; rNSW=10; rank_mean=25.000; match_rank=23
a 0 0 0 7 4 1 1 0 0 12 11 10 0 0 0 0 11 0 0 0
c 0 0 0 3 0 1 1 3 11 0 0 0 0 0 1 12 2 0 0 0
g 0 0 0 3 6 10 5 4 0 0 2 3 13 7 0 0 0 0 0 0
t 0 0 0 0 3 1 6 6 2 1 0 0 0 6 12 1 0 0 0 0
|
MA0504.1_shift2 (NR2C2) |
|
0.845 |
0.423 |
6.396 |
0.402 |
0.903 |
1.517 |
0.916 |
17 |
44 |
27 |
30 |
33 |
11 |
15 |
25.286 |
24 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0504.1 (NR2C2); m=13/16; ncol2=15; w=9; offset=-6; strand=D; shift=2; score=25.2857; --mgrGGTCArAGGTCA---
; cor=0.845; Ncor=0.423; logoDP=6.396; NIcor=0.402; NsEucl=0.903; SSD=1.517; NSW=0.916; rcor=17; rNcor=44; rlogoDP=27; rNIcor=30; rNsEucl=33; rSSD=11; rNSW=15; rank_mean=25.286; match_rank=24
a 0 0 129 82 193 0 10 3 6 343 187 324 10 11 0 9 290 0 0 0
c 0 0 126 70 6 8 3 0 309 0 0 0 0 0 27 315 0 0 0 0
g 0 0 90 221 195 366 355 79 54 48 208 71 385 336 89 35 92 0 0 0
t 0 0 50 22 1 21 27 313 26 4 0 0 0 48 279 36 13 0 0 0
|
MA0115.1_shift2 (NR1H2::RXRA) |
|
0.797 |
0.487 |
13.304 |
0.469 |
0.893 |
2.754 |
0.875 |
35 |
29 |
1 |
20 |
42 |
33 |
40 |
28.571 |
27 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0115.1 (NR1H2::RXRA); m=14/16; ncol2=17; w=11; offset=-6; strand=D; shift=2; score=28.5714; --AAAGGTCAAAGGTCAAc-
; cor=0.797; Ncor=0.487; logoDP=13.304; NIcor=0.469; NsEucl=0.893; SSD=2.754; NSW=0.875; rcor=35; rNcor=29; rlogoDP=1; rNIcor=20; rNsEucl=42; rSSD=33; rNSW=40; rank_mean=28.571; match_rank=27
a 0 0 17 17 20 0 0 0 0 25 24 25 0 0 0 0 25 20 0 0
c 0 0 5 1 0 0 0 0 25 0 0 0 0 0 0 25 0 1 15 0
g 0 0 0 5 5 25 24 0 0 0 0 0 25 25 0 0 0 2 6 0
t 0 0 3 2 0 0 1 25 0 0 1 0 0 0 25 0 0 2 4 0
|
MA0114.1_shift4 (HNF4A) |
|
0.818 |
0.460 |
3.992 |
0.424 |
0.895 |
1.782 |
0.901 |
28 |
34 |
38 |
27 |
40 |
15 |
23 |
29.286 |
29 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0114.1 (HNF4A); m=15/16; ncol2=13; w=9; offset=-4; strand=D; shift=4; score=29.2857; ----rGgbCAAAGkyCa---
; cor=0.818; Ncor=0.460; logoDP=3.992; NIcor=0.424; NsEucl=0.895; SSD=1.782; NSW=0.901; rcor=28; rNcor=34; rlogoDP=38; rNIcor=27; rNsEucl=40; rSSD=15; rNSW=23; rank_mean=29.286; match_rank=29
a 0 0 0 0 28 2 12 5 3 59 53 56 4 6 3 4 42 0 0 0
c 0 0 0 0 7 2 4 23 51 1 2 1 4 2 22 49 7 0 0 0
g 0 0 0 0 27 56 35 20 4 3 10 8 58 33 11 5 10 0 0 0
t 0 0 0 0 5 7 16 19 9 4 2 2 1 26 31 9 8 0 0 0
|
MA0112.2_shift6 (ESR1) |
|
0.751 |
0.451 |
4.613 |
0.445 |
0.904 |
2.672 |
0.889 |
47 |
37 |
36 |
22 |
32 |
32 |
34 |
34.286 |
41 |
; oligos_6nt_test_vs_ctrl_m5 versus MA0112.2 (ESR1); m=16/16; ncol2=20; w=12; offset=-2; strand=D; shift=6; score=34.2857; ------vkscmaGGtCAccc
; cor=0.751; Ncor=0.451; logoDP=4.613; NIcor=0.445; NsEucl=0.904; SSD=2.672; NSW=0.889; rcor=47; rNcor=37; rlogoDP=36; rNIcor=22; rNsEucl=32; rSSD=32; rNSW=34; rank_mean=34.286; match_rank=41
a 0 0 0 0 0 0 122 107 64 83 134 308 36 19 33 4 398 58 63 64
c 0 0 0 0 0 0 120 80 173 229 232 28 8 18 41 394 13 250 276 258
g 0 0 0 0 0 0 154 164 149 65 47 89 387 420 91 53 27 107 53 97
t 0 0 0 0 0 0 71 117 82 93 57 48 43 18 310 24 37 60 83 56
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_8nt_test_vs_ctrl_m4_shift0 (oligos_8nt_test_vs_ctrl_m4) |
|
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_8nt_test_vs_ctrl_m4; m=0 (reference); ncol1=20; shift=0; ncol=20; hyCCCTGGACTTTGCCCTvb
; Alignment reference
a 12 8 4 4 0 3 0 1 37 0 1 0 0 1 0 1 0 6 11 6
c 15 12 28 30 34 1 0 2 2 39 1 4 0 3 33 38 37 0 11 10
g 3 8 3 2 0 0 40 36 0 0 0 1 2 34 3 0 0 1 13 10
t 10 12 5 4 6 36 0 1 1 1 38 35 38 2 4 1 3 33 5 14
|
MA0114.2_shift4 (HNF4A) |
|
0.856 |
0.642 |
8.481 |
0.631 |
0.930 |
2.224 |
0.926 |
11 |
3 |
15 |
3 |
4 |
24 |
9 |
9.857 |
6 |
; oligos_8nt_test_vs_ctrl_m4 versus MA0114.2 (HNF4A); m=1/4; ncol2=15; w=15; offset=4; strand=D; shift=4; score= 9.8571; ----cTGrmCTTTGrmCyy-
; cor=0.856; Ncor=0.642; logoDP=8.481; NIcor=0.631; NsEucl=0.930; SSD=2.224; NSW=0.926; rcor=11; rNcor=3; rlogoDP=15; rNIcor=3; rNsEucl=4; rSSD=24; rNSW=9; rank_mean=9.857; match_rank=6
a 0 0 0 0 2766 1731 837 6075 11026 117 26 178 0 864 5270 6119 1156 1870 2070 0
c 0 0 0 0 5971 720 51 1846 4425 16535 1630 2637 173 35 3745 5653 13491 6498 6450 0
g 0 0 0 0 3974 907 15810 8370 329 67 0 367 407 15741 5340 1662 352 415 3001 0
t 0 0 0 0 4057 13410 70 477 988 49 15112 13586 16188 128 2413 3334 1769 7985 5247 0
|
MA0484.1_rc_shift5 (HNF4G_rc) |
|
0.853 |
0.640 |
0.743 |
-0.132 |
0.931 |
2.114 |
0.930 |
12 |
4 |
47 |
47 |
3 |
21 |
8 |
20.286 |
17 |
; oligos_8nt_test_vs_ctrl_m4 versus MA0484.1_rc (HNF4G_rc); m=2/4; ncol2=15; w=15; offset=5; strand=R; shift=5; score=20.2857; -----TGrmCTTTGrmCyyt
; cor=0.853; Ncor=0.640; logoDP=0.743; NIcor=-0.132; NsEucl=0.931; SSD=2.114; NSW=0.930; rcor=12; rNcor=4; rlogoDP=47; rNIcor=47; rNsEucl=3; rSSD=21; rNSW=8; rank_mean=20.286; match_rank=17
a 0 0 0 0 0 1317 831 3782 5361 249 50 0 0 404 2792 3494 668 843 832 2063
c 0 0 0 0 0 556 85 1107 3624 9098 938 1481 54 221 2279 3301 7480 3811 3830 2011
g 0 0 0 0 0 794 8377 4338 143 6 0 82 55 8827 2870 713 201 102 1531 1864
t 0 0 0 0 0 6785 159 225 324 99 8464 7889 9343 0 1511 1944 1103 4696 3259 3514
|
MA0114.1_rc_shift5 (HNF4A_rc) |
|
0.846 |
0.550 |
2.854 |
0.172 |
0.917 |
2.353 |
0.910 |
16 |
15 |
44 |
36 |
13 |
25 |
19 |
24.000 |
21 |
; oligos_8nt_test_vs_ctrl_m4 versus MA0114.1_rc (HNF4A_rc); m=3/4; ncol2=13; w=13; offset=5; strand=R; shift=5; score= 24; -----tGrmCTTTGvcCy--
; cor=0.846; Ncor=0.550; logoDP=2.854; NIcor=0.172; NsEucl=0.917; SSD=2.353; NSW=0.910; rcor=16; rNcor=15; rlogoDP=44; rNIcor=36; rNsEucl=13; rSSD=25; rNSW=19; rank_mean=24.000; match_rank=21
a 0 0 0 0 0 8 9 31 26 1 2 2 4 9 19 16 7 5 0 0
c 0 0 0 0 0 10 5 11 33 58 8 10 3 4 20 35 56 27 0 0
g 0 0 0 0 0 7 49 22 2 4 1 2 1 51 23 4 2 7 0 0
t 0 0 0 0 0 42 4 3 6 4 56 53 59 3 5 12 2 28 0 0
|
MA0065.2_rc_shift5 (PPARG::RXRA_rc) |
|
0.751 |
0.563 |
0.673 |
-0.122 |
0.913 |
3.368 |
0.888 |
48 |
14 |
48 |
46 |
20 |
39 |
36 |
35.857 |
43 |
; oligos_8nt_test_vs_ctrl_m4 versus MA0065.2_rc (PPARG::RXRA_rc); m=4/4; ncol2=15; w=15; offset=5; strand=R; shift=5; score=35.8571; -----TgmCCTyTgcCCyas
; cor=0.751; Ncor=0.563; logoDP=0.673; NIcor=-0.122; NsEucl=0.913; SSD=3.368; NSW=0.888; rcor=48; rNcor=14; rlogoDP=48; rNIcor=46; rNsEucl=20; rSSD=39; rNSW=36; rank_mean=35.857; match_rank=43
a 0 0 0 0 0 81 109 479 120 12 9 23 8 66 193 34 87 79 464 126
c 0 0 0 0 0 47 144 263 693 767 137 270 15 179 395 674 671 368 127 320
g 0 0 0 0 0 58 555 99 9 2 5 48 21 547 129 15 3 23 166 317
t 0 0 0 0 0 676 54 22 41 82 713 522 819 71 145 139 100 390 101 94
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_8nt_test_vs_ctrl_m2_shift0 (oligos_8nt_test_vs_ctrl_m2) |
|
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_8nt_test_vs_ctrl_m2; m=0 (reference); ncol1=23; shift=0; ncol=23; myTCCArrGmCCAAAGGkCAGvh
; Alignment reference
a 2 0 0 0 0 3 2 2 0 2 0 0 3 3 3 0 0 0 0 3 0 1 1
c 1 2 0 3 3 0 0 0 0 1 3 3 0 0 0 0 0 0 3 0 0 1 1
g 0 0 0 0 0 0 1 1 3 0 0 0 0 0 0 3 3 1 0 0 3 1 0
t 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1
|
MA0512.1_shift11 (Rxra) |
|
0.905 |
0.433 |
10.330 |
0.424 |
0.925 |
1.352 |
0.939 |
4 |
41 |
8 |
28 |
7 |
6 |
5 |
14.143 |
7 |
; oligos_8nt_test_vs_ctrl_m2 versus MA0512.1 (Rxra); m=1/5; ncol2=11; w=11; offset=11; strand=D; shift=11; score=14.1429; -----------CArAGKTCAgd-
; cor=0.905; Ncor=0.433; logoDP=10.330; NIcor=0.424; NsEucl=0.925; SSD=1.352; NSW=0.939; rcor=4; rNcor=41; rlogoDP=8; rNIcor=28; rNsEucl=7; rSSD=6; rNSW=5; rank_mean=14.143; match_rank=7
a 0 0 0 0 0 0 0 0 0 0 0 278 4154 2623 4877 0 0 0 0 5348 1150 1640 0
c 0 0 0 0 0 0 0 0 0 0 0 4521 418 252 0 0 0 583 5348 0 1070 742 0
g 0 0 0 0 0 0 0 0 0 0 0 305 9 2473 471 5348 3882 643 0 0 2336 1569 0
t 0 0 0 0 0 0 0 0 0 0 0 244 767 0 0 0 1466 4122 0 0 792 1397 0
|
MA0114.1_shift7 (HNF4A) |
|
0.862 |
0.487 |
6.666 |
0.497 |
0.914 |
2.491 |
0.904 |
8 |
30 |
24 |
14 |
17 |
27 |
22 |
20.286 |
16 |
; oligos_8nt_test_vs_ctrl_m2 versus MA0114.1 (HNF4A); m=2/5; ncol2=13; w=13; offset=7; strand=D; shift=7; score=20.2857; -------rGgbCAAAGkyCa---
; cor=0.862; Ncor=0.487; logoDP=6.666; NIcor=0.497; NsEucl=0.914; SSD=2.491; NSW=0.904; rcor=8; rNcor=30; rlogoDP=24; rNIcor=14; rNsEucl=17; rSSD=27; rNSW=22; rank_mean=20.286; match_rank=16
a 0 0 0 0 0 0 0 28 2 12 5 3 59 53 56 4 6 3 4 42 0 0 0
c 0 0 0 0 0 0 0 7 2 4 23 51 1 2 1 4 2 22 49 7 0 0 0
g 0 0 0 0 0 0 0 27 56 35 20 4 3 10 8 58 33 11 5 10 0 0 0
t 0 0 0 0 0 0 0 5 7 16 19 9 4 2 2 1 26 31 9 8 0 0 0
|
MA0484.1_shift5 (HNF4G) |
|
0.818 |
0.534 |
10.149 |
0.530 |
0.916 |
3.212 |
0.893 |
27 |
17 |
10 |
11 |
15 |
37 |
30 |
21.000 |
18 |
; oligos_8nt_test_vs_ctrl_m2 versus MA0484.1 (HNF4G); m=3/5; ncol2=15; w=15; offset=5; strand=D; shift=5; score= 21; -----arrGkyCAAAGkyCA---
; cor=0.818; Ncor=0.534; logoDP=10.149; NIcor=0.530; NsEucl=0.916; SSD=3.212; NSW=0.893; rcor=27; rNcor=17; rlogoDP=10; rNIcor=11; rNsEucl=15; rSSD=37; rNSW=30; rank_mean=21.000; match_rank=18
a 0 0 0 0 0 3514 3259 4696 1103 1944 1511 0 9343 7889 8464 99 324 225 159 6785 0 0 0
c 0 0 0 0 0 1864 1531 102 201 713 2870 8827 55 82 0 6 143 4338 8377 794 0 0 0
g 0 0 0 0 0 2011 3830 3811 7480 3301 2279 221 54 1481 938 9098 3624 1107 85 556 0 0 0
t 0 0 0 0 0 2063 832 843 668 3494 2792 404 0 0 50 249 5361 3782 831 1317 0 0 0
|
MA0017.1_rc_shift6 (NR2F1_rc) |
|
0.817 |
0.497 |
3.603 |
-0.066 |
0.914 |
2.905 |
0.896 |
29 |
24 |
41 |
44 |
19 |
34 |
28 |
31.286 |
37 |
; oligos_8nt_test_vs_ctrl_m2 versus MA0017.1_rc (NR2F1_rc); m=4/5; ncol2=14; w=14; offset=6; strand=R; shift=6; score=31.2857; ------arGkkCAAAGkTCA---
; cor=0.817; Ncor=0.497; logoDP=3.603; NIcor=-0.066; NsEucl=0.914; SSD=2.905; NSW=0.896; rcor=29; rNcor=24; rlogoDP=41; rNIcor=44; rNsEucl=19; rSSD=34; rNSW=28; rank_mean=31.286; match_rank=37
a 0 0 0 0 0 0 7 4 1 1 0 0 12 11 10 0 0 0 0 11 0 0 0
c 0 0 0 0 0 0 3 0 1 1 3 11 0 0 0 0 0 1 12 2 0 0 0
g 0 0 0 0 0 0 3 6 10 5 4 0 0 2 3 13 7 0 0 0 0 0 0
t 0 0 0 0 0 0 0 3 1 6 6 2 1 0 0 0 6 12 1 0 0 0 0
|
MA0114.2_rc_shift6 (HNF4A_rc) |
|
0.795 |
0.519 |
5.945 |
0.175 |
0.912 |
3.514 |
0.883 |
36 |
19 |
32 |
35 |
22 |
40 |
38 |
31.714 |
38 |
; oligos_8nt_test_vs_ctrl_m2 versus MA0114.2_rc (HNF4A_rc); m=5/5; ncol2=15; w=15; offset=6; strand=R; shift=6; score=31.7143; ------rrGkyCAAAGkyCAg--
; cor=0.795; Ncor=0.519; logoDP=5.945; NIcor=0.175; NsEucl=0.912; SSD=3.514; NSW=0.883; rcor=36; rNcor=19; rlogoDP=32; rNIcor=35; rNsEucl=22; rSSD=40; rNSW=38; rank_mean=31.714; match_rank=38
a 0 0 0 0 0 0 5247 7985 1769 3334 2413 128 16188 13586 15112 49 988 477 70 13410 4057 0 0
c 0 0 0 0 0 0 3001 415 352 1662 5340 15741 407 367 0 67 329 8370 15810 907 3974 0 0
g 0 0 0 0 0 0 6450 6498 13491 5653 3745 35 173 2637 1630 16535 4425 1846 51 720 5971 0 0
t 0 0 0 0 0 0 2070 1870 1156 6119 5270 864 0 178 26 117 11026 6075 837 1731 2766 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_8nt_test_vs_ctrl_m1_shift0 (oligos_8nt_test_vs_ctrl_m1) |
|
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_8nt_test_vs_ctrl_m1; m=0 (reference); ncol1=21; shift=0; ncol=21; ymAAGTCCAAAGTCCAGGGrw
; Alignment reference
a 3 5 15 18 0 1 0 0 18 17 16 0 0 0 2 15 1 3 0 6 6
c 6 7 0 0 0 1 18 18 0 0 0 2 1 18 16 0 1 0 0 3 4
g 3 4 2 0 17 1 0 0 0 1 2 15 3 0 0 0 14 14 15 7 3
t 6 2 1 0 1 15 0 0 0 0 0 1 14 0 0 3 2 1 3 2 5
|
MA0484.1_shift1 (HNF4G) |
|
0.841 |
0.600 |
8.171 |
0.570 |
0.925 |
2.513 |
0.916 |
19 |
8 |
17 |
7 |
6 |
28 |
14 |
14.143 |
8 |
; oligos_8nt_test_vs_ctrl_m1 versus MA0484.1 (HNF4G); m=1/3; ncol2=15; w=15; offset=1; strand=D; shift=1; score=14.1429; -arrGkyCAAAGkyCA-----
; cor=0.841; Ncor=0.600; logoDP=8.171; NIcor=0.570; NsEucl=0.925; SSD=2.513; NSW=0.916; rcor=19; rNcor=8; rlogoDP=17; rNIcor=7; rNsEucl=6; rSSD=28; rNSW=14; rank_mean=14.143; match_rank=8
a 0 3514 3259 4696 1103 1944 1511 0 9343 7889 8464 99 324 225 159 6785 0 0 0 0 0
c 0 1864 1531 102 201 713 2870 8827 55 82 0 6 143 4338 8377 794 0 0 0 0 0
g 0 2011 3830 3811 7480 3301 2279 221 54 1481 938 9098 3624 1107 85 556 0 0 0 0 0
t 0 2063 832 843 668 3494 2792 404 0 0 50 249 5361 3782 831 1317 0 0 0 0 0
|
MA0114.2_rc_shift2 (HNF4A_rc) |
|
0.843 |
0.602 |
4.672 |
0.155 |
0.924 |
2.580 |
0.914 |
18 |
7 |
35 |
39 |
8 |
30 |
17 |
22.000 |
19 |
; oligos_8nt_test_vs_ctrl_m1 versus MA0114.2_rc (HNF4A_rc); m=2/3; ncol2=15; w=15; offset=2; strand=R; shift=2; score= 22; --rrGkyCAAAGkyCAg----
; cor=0.843; Ncor=0.602; logoDP=4.672; NIcor=0.155; NsEucl=0.924; SSD=2.580; NSW=0.914; rcor=18; rNcor=7; rlogoDP=35; rNIcor=39; rNsEucl=8; rSSD=30; rNSW=17; rank_mean=22.000; match_rank=19
a 0 0 5247 7985 1769 3334 2413 128 16188 13586 15112 49 988 477 70 13410 4057 0 0 0 0
c 0 0 3001 415 352 1662 5340 15741 407 367 0 67 329 8370 15810 907 3974 0 0 0 0
g 0 0 6450 6498 13491 5653 3745 35 173 2637 1630 16535 4425 1846 51 720 5971 0 0 0 0
t 0 0 2070 1870 1156 6119 5270 864 0 178 26 117 11026 6075 837 1731 2766 0 0 0 0
|
MA0114.1_shift3 (HNF4A) |
|
0.799 |
0.495 |
5.209 |
0.470 |
0.906 |
2.964 |
0.886 |
33 |
25 |
33 |
19 |
28 |
36 |
37 |
30.143 |
33 |
; oligos_8nt_test_vs_ctrl_m1 versus MA0114.1 (HNF4A); m=3/3; ncol2=13; w=13; offset=3; strand=D; shift=3; score=30.1429; ---rGgbCAAAGkyCa-----
; cor=0.799; Ncor=0.495; logoDP=5.209; NIcor=0.470; NsEucl=0.906; SSD=2.964; NSW=0.886; rcor=33; rNcor=25; rlogoDP=33; rNIcor=19; rNsEucl=28; rSSD=36; rNSW=37; rank_mean=30.143; match_rank=33
a 0 0 0 28 2 12 5 3 59 53 56 4 6 3 4 42 0 0 0 0 0
c 0 0 0 7 2 4 23 51 1 2 1 4 2 22 49 7 0 0 0 0 0
g 0 0 0 27 56 35 20 4 3 10 8 58 33 11 5 10 0 0 0 0 0
t 0 0 0 5 7 16 19 9 4 2 2 1 26 31 9 8 0 0 0 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_6nt_test_vs_ctrl_m3_shift2 (oligos_6nt_test_vs_ctrl_m3) |
|
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=11; shift=2; ncol=18; --mdGGGTCAGrr-----
; Alignment reference
a 0 0 425 502 0 0 0 0 0 1513 0 452 396 0 0 0 0 0
c 0 0 446 86 0 0 0 0 1513 0 0 285 256 0 0 0 0 0
g 0 0 284 466 1513 1513 1513 0 0 0 1513 477 526 0 0 0 0 0
t 0 0 358 459 0 0 0 1513 0 0 0 299 335 0 0 0 0 0
|
MA0258.1_shift2 (ESR2) |
|
0.848 |
0.518 |
6.561 |
0.507 |
0.920 |
1.531 |
0.930 |
15 |
20 |
26 |
12 |
10 |
12 |
7 |
14.571 |
9 |
; oligos_6nt_test_vs_ctrl_m3 versus MA0258.1 (ESR2); m=1/5; ncol2=18; w=11; offset=0; strand=D; shift=2; score=14.5714; --cwrGGTCAsgkTGmCC
; cor=0.848; Ncor=0.518; logoDP=6.561; NIcor=0.507; NsEucl=0.920; SSD=1.531; NSW=0.930; rcor=15; rNcor=20; rlogoDP=26; rNIcor=12; rNsEucl=10; rSSD=12; rNSW=7; rank_mean=14.571; match_rank=9
a 0 0 78 158 186 27 18 13 0 337 49 64 52 21 63 178 34 46
c 0 0 161 51 15 0 20 19 357 1 123 63 61 33 25 99 268 289
g 0 0 63 41 154 275 319 33 0 0 113 149 147 24 265 19 2 0
t 0 0 55 107 2 55 0 292 0 19 72 81 97 279 4 61 53 22
|
MA0071.1_shift0 (RORA_1) |
|
0.834 |
0.513 |
9.825 |
0.504 |
0.892 |
1.486 |
0.907 |
21 |
21 |
12 |
13 |
43 |
8 |
20 |
19.714 |
15 |
; oligos_6nt_test_vs_ctrl_m3 versus MA0071.1 (RORA_1); m=2/5; ncol2=10; w=8; offset=-2; strand=D; shift=0; score=19.7143; wwcwAGGTCA--------
; cor=0.834; Ncor=0.513; logoDP=9.825; NIcor=0.504; NsEucl=0.892; SSD=1.486; NSW=0.907; rcor=21; rNcor=21; rlogoDP=12; rNIcor=13; rNsEucl=43; rSSD=8; rNSW=20; rank_mean=19.714; match_rank=15
a 15 9 6 11 21 0 0 0 0 25 0 0 0 0 0 0 0 0
c 1 1 12 2 0 0 0 0 25 0 0 0 0 0 0 0 0 0
g 2 0 4 5 4 25 25 0 0 0 0 0 0 0 0 0 0 0
t 7 15 3 7 0 0 0 25 0 0 0 0 0 0 0 0 0 0
|
MA0504.1_shift2 (NR2C2) |
|
0.775 |
0.568 |
6.381 |
0.530 |
0.904 |
2.216 |
0.899 |
43 |
13 |
28 |
10 |
30 |
23 |
27 |
24.857 |
22 |
; oligos_6nt_test_vs_ctrl_m3 versus MA0504.1 (NR2C2); m=3/5; ncol2=15; w=11; offset=0; strand=D; shift=2; score=24.8571; --mgrGGTCArAGGTCA-
; cor=0.775; Ncor=0.568; logoDP=6.381; NIcor=0.530; NsEucl=0.904; SSD=2.216; NSW=0.899; rcor=43; rNcor=13; rlogoDP=28; rNIcor=10; rNsEucl=30; rSSD=23; rNSW=27; rank_mean=24.857; match_rank=22
a 0 0 129 82 193 0 10 3 6 343 187 324 10 11 0 9 290 0
c 0 0 126 70 6 8 3 0 309 0 0 0 0 0 27 315 0 0
g 0 0 90 221 195 366 355 79 54 48 208 71 385 336 89 35 92 0
t 0 0 50 22 1 21 27 313 26 4 0 0 0 48 279 36 13 0
|
MA0258.2_shift4 (ESR2) |
|
0.814 |
0.431 |
7.479 |
0.420 |
0.895 |
1.783 |
0.901 |
30 |
42 |
19 |
29 |
41 |
16 |
24 |
28.714 |
28 |
; oligos_6nt_test_vs_ctrl_m3 versus MA0258.2 (ESR2); m=4/5; ncol2=15; w=9; offset=2; strand=D; shift=4; score=28.7143; ----rGGTCAsmstGaCC
; cor=0.814; Ncor=0.431; logoDP=7.479; NIcor=0.420; NsEucl=0.895; SSD=1.783; NSW=0.901; rcor=30; rNcor=42; rlogoDP=19; rNIcor=29; rNsEucl=41; rSSD=16; rNSW=24; rank_mean=28.714; match_rank=28
a 0 0 0 0 5410 429 59 74 0 8098 502 2092 1808 1602 1121 3278 434 1111
c 0 0 0 0 96 0 0 147 7621 1 4202 3235 2510 975 398 2056 6469 5854
g 0 0 0 0 2563 7170 8143 989 533 57 2738 1688 2173 533 6658 1391 363 0
t 0 0 0 0 174 644 41 7033 89 87 801 1228 1752 5133 66 1518 977 1278
|
MA0074.1_shift4 (RXRA::VDR) |
|
0.798 |
0.423 |
8.578 |
0.442 |
0.890 |
1.954 |
0.891 |
34 |
45 |
14 |
24 |
46 |
19 |
31 |
30.429 |
34 |
; oligos_6nt_test_vs_ctrl_m3 versus MA0074.1 (RXRA::VDR); m=5/5; ncol2=15; w=9; offset=2; strand=D; shift=4; score=30.4286; ----RGGTCAwcGrGTTC
; cor=0.798; Ncor=0.423; logoDP=8.578; NIcor=0.442; NsEucl=0.890; SSD=1.954; NSW=0.891; rcor=34; rNcor=45; rlogoDP=14; rNIcor=24; rNsEucl=46; rSSD=19; rNSW=31; rank_mean=30.429; match_rank=34
a 0 0 0 0 3 0 0 0 0 9 4 2 2 5 0 0 1 0
c 0 0 0 0 0 0 0 0 9 0 2 4 0 0 0 0 0 9
g 0 0 0 0 7 10 9 0 0 1 0 2 8 5 10 0 0 0
t 0 0 0 0 0 0 1 10 1 0 4 2 0 0 0 10 9 1
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4) |
|
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=24; shift=0; ncol=24; TmGGkCCAGkCCAAAGwCCAArwk
; Alignment reference
a 0 1 0 0 0 0 0 2 0 0 0 0 2 2 2 0 1 0 0 2 2 1 1 0
c 0 1 0 0 0 2 2 0 0 0 2 2 0 0 0 0 0 2 2 0 0 0 0 0
g 0 0 2 2 1 0 0 0 2 1 0 0 0 0 0 2 0 0 0 0 0 1 0 1
t 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 1
|
MA0114.1_shift7 (HNF4A) |
|
0.838 |
0.454 |
6.625 |
0.452 |
0.907 |
2.909 |
0.888 |
20 |
36 |
25 |
21 |
26 |
35 |
35 |
28.286 |
25 |
; oligos_7nt_test_vs_ctrl_m4 versus MA0114.1 (HNF4A); m=1/3; ncol2=13; w=13; offset=7; strand=D; shift=7; score=28.2857; -------rGgbCAAAGkyCa----
; cor=0.838; Ncor=0.454; logoDP=6.625; NIcor=0.452; NsEucl=0.907; SSD=2.909; NSW=0.888; rcor=20; rNcor=36; rlogoDP=25; rNIcor=21; rNsEucl=26; rSSD=35; rNSW=35; rank_mean=28.286; match_rank=25
a 0 0 0 0 0 0 0 28 2 12 5 3 59 53 56 4 6 3 4 42 0 0 0 0
c 0 0 0 0 0 0 0 7 2 4 23 51 1 2 1 4 2 22 49 7 0 0 0 0
g 0 0 0 0 0 0 0 27 56 35 20 4 3 10 8 58 33 11 5 10 0 0 0 0
t 0 0 0 0 0 0 0 5 7 16 19 9 4 2 2 1 26 31 9 8 0 0 0 0
|
MA0484.1_shift5 (HNF4G) |
|
0.776 |
0.485 |
10.252 |
0.478 |
0.904 |
4.147 |
0.862 |
41 |
31 |
9 |
17 |
31 |
45 |
44 |
31.143 |
36 |
; oligos_7nt_test_vs_ctrl_m4 versus MA0484.1 (HNF4G); m=2/3; ncol2=15; w=15; offset=5; strand=D; shift=5; score=31.1429; -----arrGkyCAAAGkyCA----
; cor=0.776; Ncor=0.485; logoDP=10.252; NIcor=0.478; NsEucl=0.904; SSD=4.147; NSW=0.862; rcor=41; rNcor=31; rlogoDP=9; rNIcor=17; rNsEucl=31; rSSD=45; rNSW=44; rank_mean=31.143; match_rank=36
a 0 0 0 0 0 3514 3259 4696 1103 1944 1511 0 9343 7889 8464 99 324 225 159 6785 0 0 0 0
c 0 0 0 0 0 1864 1531 102 201 713 2870 8827 55 82 0 6 143 4338 8377 794 0 0 0 0
g 0 0 0 0 0 2011 3830 3811 7480 3301 2279 221 54 1481 938 9098 3624 1107 85 556 0 0 0 0
t 0 0 0 0 0 2063 832 843 668 3494 2792 404 0 0 50 249 5361 3782 831 1317 0 0 0 0
|
MA0114.2_rc_shift6 (HNF4A_rc) |
|
0.800 |
0.500 |
6.018 |
0.161 |
0.908 |
3.775 |
0.874 |
32 |
22 |
30 |
37 |
25 |
43 |
41 |
32.857 |
40 |
; oligos_7nt_test_vs_ctrl_m4 versus MA0114.2_rc (HNF4A_rc); m=3/3; ncol2=15; w=15; offset=6; strand=R; shift=6; score=32.8571; ------rrGkyCAAAGkyCAg---
; cor=0.800; Ncor=0.500; logoDP=6.018; NIcor=0.161; NsEucl=0.908; SSD=3.775; NSW=0.874; rcor=32; rNcor=22; rlogoDP=30; rNIcor=37; rNsEucl=25; rSSD=43; rNSW=41; rank_mean=32.857; match_rank=40
a 0 0 0 0 0 0 5247 7985 1769 3334 2413 128 16188 13586 15112 49 988 477 70 13410 4057 0 0 0
c 0 0 0 0 0 0 3001 415 352 1662 5340 15741 407 367 0 67 329 8370 15810 907 3974 0 0 0
g 0 0 0 0 0 0 6450 6498 13491 5653 3745 35 173 2637 1630 16535 4425 1846 51 720 5971 0 0 0
t 0 0 0 0 0 0 2070 1870 1156 6119 5270 864 0 178 26 117 11026 6075 837 1731 2766 0 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1) |
|
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=24; shift=0; ncol=24; TykGGCCAGyCCAAAGTCCArGAy
; Alignment reference
a 0 0 0 0 0 0 0 2 0 0 0 0 2 2 2 0 0 0 0 2 1 0 2 0
c 0 1 0 0 0 2 2 0 0 1 2 2 0 0 0 0 0 2 2 0 0 0 0 1
g 0 0 1 2 2 0 0 0 2 0 0 0 0 0 0 2 0 0 0 0 1 2 0 0
t 2 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 1
|
MA0114.2_rc_shift6 (HNF4A_rc) |
|
0.832 |
0.520 |
5.970 |
0.153 |
0.914 |
3.300 |
0.890 |
23 |
18 |
31 |
40 |
16 |
38 |
33 |
28.429 |
26 |
; oligos_7nt_test_vs_ctrl_m1 versus MA0114.2_rc (HNF4A_rc); m=1/3; ncol2=15; w=15; offset=6; strand=R; shift=6; score=28.4286; ------rrGkyCAAAGkyCAg---
; cor=0.832; Ncor=0.520; logoDP=5.970; NIcor=0.153; NsEucl=0.914; SSD=3.300; NSW=0.890; rcor=23; rNcor=18; rlogoDP=31; rNIcor=40; rNsEucl=16; rSSD=38; rNSW=33; rank_mean=28.429; match_rank=26
a 0 0 0 0 0 0 5247 7985 1769 3334 2413 128 16188 13586 15112 49 988 477 70 13410 4057 0 0 0
c 0 0 0 0 0 0 3001 415 352 1662 5340 15741 407 367 0 67 329 8370 15810 907 3974 0 0 0
g 0 0 0 0 0 0 6450 6498 13491 5653 3745 35 173 2637 1630 16535 4425 1846 51 720 5971 0 0 0
t 0 0 0 0 0 0 2070 1870 1156 6119 5270 864 0 178 26 117 11026 6075 837 1731 2766 0 0 0
|
MA0484.1_shift5 (HNF4G) |
|
0.775 |
0.484 |
10.539 |
0.478 |
0.901 |
4.388 |
0.854 |
42 |
32 |
6 |
16 |
35 |
47 |
46 |
32.000 |
39 |
; oligos_7nt_test_vs_ctrl_m1 versus MA0484.1 (HNF4G); m=2/3; ncol2=15; w=15; offset=5; strand=D; shift=5; score= 32; -----arrGkyCAAAGkyCA----
; cor=0.775; Ncor=0.484; logoDP=10.539; NIcor=0.478; NsEucl=0.901; SSD=4.388; NSW=0.854; rcor=42; rNcor=32; rlogoDP=6; rNIcor=16; rNsEucl=35; rSSD=47; rNSW=46; rank_mean=32.000; match_rank=39
a 0 0 0 0 0 3514 3259 4696 1103 1944 1511 0 9343 7889 8464 99 324 225 159 6785 0 0 0 0
c 0 0 0 0 0 1864 1531 102 201 713 2870 8827 55 82 0 6 143 4338 8377 794 0 0 0 0
g 0 0 0 0 0 2011 3830 3811 7480 3301 2279 221 54 1481 938 9098 3624 1107 85 556 0 0 0 0
t 0 0 0 0 0 2063 832 843 668 3494 2792 404 0 0 50 249 5361 3782 831 1317 0 0 0 0
|
MA0114.1_shift7 (HNF4A) |
|
0.801 |
0.434 |
6.718 |
0.434 |
0.897 |
3.573 |
0.863 |
31 |
40 |
22 |
26 |
39 |
42 |
43 |
34.714 |
42 |
; oligos_7nt_test_vs_ctrl_m1 versus MA0114.1 (HNF4A); m=3/3; ncol2=13; w=13; offset=7; strand=D; shift=7; score=34.7143; -------rGgbCAAAGkyCa----
; cor=0.801; Ncor=0.434; logoDP=6.718; NIcor=0.434; NsEucl=0.897; SSD=3.573; NSW=0.863; rcor=31; rNcor=40; rlogoDP=22; rNIcor=26; rNsEucl=39; rSSD=42; rNSW=43; rank_mean=34.714; match_rank=42
a 0 0 0 0 0 0 0 28 2 12 5 3 59 53 56 4 6 3 4 42 0 0 0 0
c 0 0 0 0 0 0 0 7 2 4 23 51 1 2 1 4 2 22 49 7 0 0 0 0
g 0 0 0 0 0 0 0 27 56 35 20 4 3 10 8 58 33 11 5 10 0 0 0 0
t 0 0 0 0 0 0 0 5 7 16 19 9 4 2 2 1 26 31 9 8 0 0 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_8nt_test_vs_ctrl_m5_shift4 (oligos_8nt_test_vs_ctrl_m5) |
|
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_8nt_test_vs_ctrl_m5; m=0 (reference); ncol1=13; shift=4; ncol=17; ----aaAAATCAATAww
; Alignment reference
a 0 0 0 0 185 190 438 449 466 1 13 425 465 0 467 139 167
c 0 0 0 0 92 81 4 0 0 0 452 0 1 1 2 93 76
g 0 0 0 0 94 90 8 4 2 0 0 29 1 0 0 102 81
t 0 0 0 0 98 108 19 16 1 468 4 15 2 468 0 135 145
|
MA0594.1_shift1 (Hoxa9) |
|
0.826 |
0.413 |
6.314 |
0.388 |
0.891 |
1.508 |
0.906 |
25 |
46 |
29 |
33 |
45 |
9 |
21 |
29.714 |
31 |
; oligos_8nt_test_vs_ctrl_m5 versus MA0594.1 (Hoxa9); m=1/3; ncol2=11; w=8; offset=-3; strand=D; shift=1; score=29.7143; -syCATmAATCA-----
; cor=0.826; Ncor=0.413; logoDP=6.314; NIcor=0.388; NsEucl=0.891; SSD=1.508; NSW=0.906; rcor=25; rNcor=46; rlogoDP=29; rNIcor=33; rNsEucl=45; rSSD=9; rNSW=21; rank_mean=29.714; match_rank=31
a 0 34 12 38 161 0 101 157 171 5 7 131 0 0 0 0 0
c 0 53 110 117 3 0 58 6 1 0 154 11 0 0 0 0 0
g 0 81 5 0 8 0 8 0 0 1 0 0 0 0 0 0 0
t 0 4 45 17 0 172 5 9 0 166 11 30 0 0 0 0 0
|
MA0047.1_rc_shift6 (Foxa2_rc) |
|
0.787 |
0.618 |
3.193 |
0.211 |
0.900 |
2.399 |
0.891 |
38 |
6 |
43 |
34 |
36 |
26 |
32 |
30.714 |
35 |
; oligos_8nt_test_vs_ctrl_m5 versus MA0047.1_rc (Foxa2_rc); m=2/3; ncol2=12; w=11; offset=2; strand=R; shift=6; score=30.7143; ------RArymAAyAwt
; cor=0.787; Ncor=0.618; logoDP=3.193; NIcor=0.211; NsEucl=0.900; SSD=2.399; NSW=0.891; rcor=38; rNcor=6; rlogoDP=43; rNIcor=34; rNsEucl=36; rSSD=26; rNSW=32; rank_mean=30.714; match_rank=35
a 0 0 0 0 0 0 12 14 8 0 11 16 16 0 16 5 2
c 0 0 0 0 0 0 0 1 0 8 6 0 0 6 0 1 1
g 0 0 0 0 0 0 5 1 9 0 0 1 1 0 1 3 3
t 0 0 0 0 0 0 0 1 0 9 0 0 0 11 0 8 11
|
MA0485.1_shift0 (Hoxc9) |
|
0.770 |
0.407 |
6.798 |
0.388 |
0.885 |
2.142 |
0.881 |
46 |
47 |
21 |
32 |
48 |
22 |
39 |
36.429 |
44 |
; oligos_8nt_test_vs_ctrl_m5 versus MA0485.1 (Hoxc9); m=3/3; ncol2=13; w=9; offset=-4; strand=D; shift=0; score=36.4286; rgCmATAAATCwy----
; cor=0.770; Ncor=0.407; logoDP=6.798; NIcor=0.388; NsEucl=0.885; SSD=2.142; NSW=0.881; rcor=46; rNcor=47; rlogoDP=21; rNIcor=32; rNsEucl=48; rSSD=22; rNSW=39; rank_mean=36.429; match_rank=44
a 235 112 88 224 661 0 745 881 879 18 48 567 141 0 0 0 0
c 110 171 605 468 3 9 84 0 6 0 715 72 329 0 0 0 0
g 401 536 40 1 205 0 35 0 0 0 5 6 160 0 0 0 0
t 139 66 152 192 16 876 21 4 0 867 117 240 255 0 0 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2) |
|
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=24; shift=0; ncol=24; CACCTGCCCTTTGACCTGGCCACG
; Alignment reference
a 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0
c 1 0 1 1 0 0 1 1 1 0 0 0 0 0 1 1 0 0 0 1 1 0 1 0
g 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1
t 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0
|
MA0114.1_rc_shift4 (HNF4A_rc) |
|
0.822 |
0.445 |
3.550 |
0.112 |
0.897 |
3.566 |
0.863 |
26 |
39 |
42 |
41 |
38 |
41 |
42 |
38.429 |
45 |
; oligos_7nt_test_vs_ctrl_m2 versus MA0114.1_rc (HNF4A_rc); m=1/3; ncol2=13; w=13; offset=4; strand=R; shift=4; score=38.4286; ----tGrmCTTTGvcCy-------
; cor=0.822; Ncor=0.445; logoDP=3.550; NIcor=0.112; NsEucl=0.897; SSD=3.566; NSW=0.863; rcor=26; rNcor=39; rlogoDP=42; rNIcor=41; rNsEucl=38; rSSD=41; rNSW=42; rank_mean=38.429; match_rank=45
a 0 0 0 0 8 9 31 26 1 2 2 4 9 19 16 7 5 0 0 0 0 0 0 0
c 0 0 0 0 10 5 11 33 58 8 10 3 4 20 35 56 27 0 0 0 0 0 0 0
g 0 0 0 0 7 49 22 2 4 1 2 1 51 23 4 2 7 0 0 0 0 0 0 0
t 0 0 0 0 42 4 3 6 4 56 53 59 3 5 12 2 28 0 0 0 0 0 0 0
|
MA0504.1_rc_shift4 (NR2C2_rc) |
|
0.787 |
0.492 |
3.742 |
0.013 |
0.902 |
4.336 |
0.855 |
37 |
26 |
40 |
43 |
34 |
46 |
45 |
38.714 |
46 |
; oligos_7nt_test_vs_ctrl_m2 versus MA0504.1_rc (NR2C2_rc); m=2/3; ncol2=15; w=15; offset=4; strand=R; shift=4; score=38.7143; ----TGACCTyTGACCyck-----
; cor=0.787; Ncor=0.492; logoDP=3.742; NIcor=0.013; NsEucl=0.902; SSD=4.336; NSW=0.855; rcor=37; rNcor=26; rlogoDP=40; rNIcor=43; rNsEucl=34; rSSD=46; rNSW=45; rank_mean=38.714; match_rank=46
a 0 0 0 0 13 36 279 48 0 0 0 4 26 313 27 21 1 22 50 0 0 0 0 0
c 0 0 0 0 92 35 89 336 385 71 208 48 54 79 355 366 195 221 90 0 0 0 0 0
g 0 0 0 0 0 315 27 0 0 0 0 0 309 0 3 8 6 70 126 0 0 0 0 0
t 0 0 0 0 290 9 0 11 10 324 187 343 6 3 10 0 193 82 129 0 0 0 0 0
|
MA0065.2_rc_shift4 (PPARG::RXRA_rc) |
|
0.779 |
0.487 |
1.791 |
-0.076 |
0.898 |
4.682 |
0.844 |
40 |
28 |
45 |
45 |
37 |
48 |
48 |
41.571 |
47 |
; oligos_7nt_test_vs_ctrl_m2 versus MA0065.2_rc (PPARG::RXRA_rc); m=3/3; ncol2=15; w=15; offset=4; strand=R; shift=4; score=41.5714; ----TgmCCTyTgcCCyas-----
; cor=0.779; Ncor=0.487; logoDP=1.791; NIcor=-0.076; NsEucl=0.898; SSD=4.682; NSW=0.844; rcor=40; rNcor=28; rlogoDP=45; rNIcor=45; rNsEucl=37; rSSD=48; rNSW=48; rank_mean=41.571; match_rank=47
a 0 0 0 0 81 109 479 120 12 9 23 8 66 193 34 87 79 464 126 0 0 0 0 0
c 0 0 0 0 47 144 263 693 767 137 270 15 179 395 674 671 368 127 320 0 0 0 0 0
g 0 0 0 0 58 555 99 9 2 5 48 21 547 129 15 3 23 166 317 0 0 0 0 0
t 0 0 0 0 676 54 22 41 82 713 522 819 71 145 139 100 390 101 94 0 0 0 0 0
|