; convert-matrix -v 1 -i $RSAT/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices.txt
; Input files
; input /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices.tf
; Input format transfac
; Output files
; output /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices.txt
; Output format tab
; pseudo-weight 1
a 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 1
c 2 0 2 2 2 0 0 1 2 2 0 0 0 2 2 1 0 0 0 0 2 0 2 0
g 0 1 0 0 0 0 1 1 0 0 0 2 1 0 0 0 2 2 2 1 0 0 0 1
t 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 0 0
//
a 1 0 0 0 1 1 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 1 0
c 0 0 1 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0
g 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0
t 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
//
a 425 502 0 0 0 0 0 1513 0 452 396
c 446 86 0 0 0 0 1513 0 0 285 256
g 284 466 1513 1513 1513 0 0 0 1513 477 526
t 358 459 0 0 0 1513 0 0 0 299 335
//
a 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
c 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 1 1 1 0 0
g 1 1 0 0 1 1 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 0 1
t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0
//
a 139 297 715 715 0 0 0 0 715 0 220 200
c 264 201 0 0 0 0 0 715 0 0 145 133
g 154 130 0 0 715 715 0 0 0 715 200 212
t 158 87 0 0 0 0 715 0 0 0 150 170
//
; Host name rsat
; Job started 2014-09-06.124540
; Job done 2014-09-06.124540
; Seconds 0.29
; user 0.29
; system 0.01
; cuser 0
; csystem 0