; convert-matrix -v 1 -i $RSAT/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm_count_matrices.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm_count_matrices.txt ; Input files ; input /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm_count_matrices.tf ; Input format transfac ; Output files ; output /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm_count_matrices.txt ; Output format tab ; pseudo-weight 1 a 0 0 0 0 0 0 0 2 0 0 0 0 2 2 2 0 0 0 0 2 1 0 2 0 c 0 1 0 0 0 2 2 0 0 1 2 2 0 0 0 0 0 2 2 0 0 0 0 1 g 0 0 1 2 2 0 0 0 2 0 0 0 0 0 0 2 0 0 0 0 1 2 0 0 t 2 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 1 // a 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 c 1 0 1 1 0 0 1 1 1 0 0 0 0 0 1 1 0 0 0 1 1 0 1 0 g 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 t 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 // a 1 1 0 0 0 1 0 2 0 0 1 0 3 0 0 0 0 0 3 0 0 0 0 0 c 1 0 1 0 3 2 3 1 0 0 0 3 0 0 1 1 2 3 0 0 0 3 3 1 g 0 1 2 3 0 0 0 0 3 3 2 0 0 2 2 2 0 0 0 2 3 0 0 1 t 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 1 // a 0 1 0 0 0 0 0 2 0 0 0 0 2 2 2 0 1 0 0 2 2 1 1 0 c 0 1 0 0 0 2 2 0 0 0 2 2 0 0 0 0 0 2 2 0 0 0 0 0 g 0 0 2 2 1 0 0 0 2 1 0 0 0 0 0 2 0 0 0 0 0 1 0 1 t 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 1 // a 0 1 0 0 0 3 0 0 0 3 0 1 1 0 3 0 0 0 0 2 0 0 1 0 c 2 0 3 3 3 0 0 3 3 0 0 0 2 3 0 0 0 0 3 0 0 0 1 0 g 1 1 0 0 0 0 3 0 0 0 3 2 0 0 0 2 3 3 0 0 3 3 1 1 t 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 2 // ; Host name rsat ; Job started 2014-09-06.124650 ; Job done 2014-09-06.124650 ; Seconds 0.29 ; user 0.29 ; system 0.01 ; cuser 0 ; csystem 0