; convert-matrix -v 1 -i $RSAT/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm_count_matrices.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm_count_matrices.txt
; Input files
; input /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm_count_matrices.tf
; Input format transfac
; Output files
; output /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm_count_matrices.txt
; Output format tab
; pseudo-weight 1
a 0 0 0 0 0 0 0 2 0 0 0 0 2 2 2 0 0 0 0 2 1 0 2 0
c 0 1 0 0 0 2 2 0 0 1 2 2 0 0 0 0 0 2 2 0 0 0 0 1
g 0 0 1 2 2 0 0 0 2 0 0 0 0 0 0 2 0 0 0 0 1 2 0 0
t 2 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 1
//
a 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0
c 1 0 1 1 0 0 1 1 1 0 0 0 0 0 1 1 0 0 0 1 1 0 1 0
g 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1
t 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0
//
a 1 1 0 0 0 1 0 2 0 0 1 0 3 0 0 0 0 0 3 0 0 0 0 0
c 1 0 1 0 3 2 3 1 0 0 0 3 0 0 1 1 2 3 0 0 0 3 3 1
g 0 1 2 3 0 0 0 0 3 3 2 0 0 2 2 2 0 0 0 2 3 0 0 1
t 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 1
//
a 0 1 0 0 0 0 0 2 0 0 0 0 2 2 2 0 1 0 0 2 2 1 1 0
c 0 1 0 0 0 2 2 0 0 0 2 2 0 0 0 0 0 2 2 0 0 0 0 0
g 0 0 2 2 1 0 0 0 2 1 0 0 0 0 0 2 0 0 0 0 0 1 0 1
t 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 1
//
a 0 1 0 0 0 3 0 0 0 3 0 1 1 0 3 0 0 0 0 2 0 0 1 0
c 2 0 3 3 3 0 0 3 3 0 0 0 2 3 0 0 0 0 3 0 0 0 1 0
g 1 1 0 0 0 0 3 0 0 0 3 2 0 0 0 2 3 3 0 0 3 3 1 1
t 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 2
//
; Host name rsat
; Job started 2014-09-06.124650
; Job done 2014-09-06.124650
; Seconds 0.29
; user 0.29
; system 0.01
; cuser 0
; csystem 0