; convert-matrix -v 1 -i $RSAT/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices.txt
; Input files
; input /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices.tf
; Input format transfac
; Output files
; output /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/06/peak-motifs.2014-09-06.123915_2014-09-06.123915_sfIm4F/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices.txt
; Output format tab
; pseudo-weight 1
a 3 5 15 18 0 1 0 0 18 17 16 0 0 0 2 15 1 3 0 6 6
c 6 7 0 0 0 1 18 18 0 0 0 2 1 18 16 0 1 0 0 3 4
g 3 4 2 0 17 1 0 0 0 1 2 15 3 0 0 0 14 14 15 7 3
t 6 2 1 0 1 15 0 0 0 0 0 1 14 0 0 3 2 1 3 2 5
//
a 2 0 0 0 0 3 2 2 0 2 0 0 3 3 3 0 0 0 0 3 0 1 1
c 1 2 0 3 3 0 0 0 0 1 3 3 0 0 0 0 0 0 3 0 0 1 1
g 0 0 0 0 0 0 1 1 3 0 0 0 0 0 0 3 3 1 0 0 3 1 0
t 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1
//
a 17 13 6 0 84 5 84 0 0 0 0 74 4 4 9 31 19
c 13 28 68 88 3 2 2 1 1 87 88 3 4 6 4 19 18
g 32 30 9 0 1 82 2 88 4 0 1 5 77 77 72 15 17
t 28 19 7 2 2 1 2 1 85 3 1 8 5 3 5 25 36
//
a 12 8 4 4 0 3 0 1 37 0 1 0 0 1 0 1 0 6 11 6
c 15 12 28 30 34 1 0 2 2 39 1 4 0 3 33 38 37 0 11 10
g 3 8 3 2 0 0 40 36 0 0 0 1 2 34 3 0 0 1 13 10
t 10 12 5 4 6 36 0 1 1 1 38 35 38 2 4 1 3 33 5 14
//
a 185 190 438 449 466 1 13 425 465 0 467 139 167
c 92 81 4 0 0 0 452 0 1 1 2 93 76
g 94 90 8 4 2 0 0 29 1 0 0 102 81
t 98 108 19 16 1 468 4 15 2 468 0 135 145
//
; Host name rsat
; Job started 2014-09-06.124754
; Job done 2014-09-06.124754
; Seconds 0.29
; user 0.29
; system 0.01
; cuser 0
; csystem 0