; matrix-scan -v 1 -quick -seq_format fasta -i $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1.tf -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score -5 -bginput -markov 1 -return distrib -return occ_proba -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_scan_mkv1_enrichment.tab ; Quick counting mode ; Input files ; input /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/data/sequences/peak-motifs_test_maxlen1000.fasta ; Matrix files ; matrix 1 /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1.tf ; Sequence format fasta ; Output files ; output /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_scan_mkv1_enrichment.tab ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.26223 ; c 0.24007 ; g 0.23539 ; t 0.26231 ; Thresholds lower upper ; score -5 NA ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 positions_6nt_m1 10 4 1 -25.700 11.200 36.900 a:0.262 c:0.240 g:0.235 t:0.262 ; ; Score distribution #matrix score occ occ_cum inv_cum inv_cum_freq occ_prior exp_occ occ_Pval occ_Eval occ_sig occ_sig_rank positions_6nt_m1 -5.0 693 199970 15914 7.371620e-02 8.143469e-02 17580.28 1.000000e+00 1.360000e+02 -2.13 1 positions_6nt_m1 -4.9 616 200586 15298 7.086279e-02 7.800980e-02 16840.91 1.000000e+00 1.360000e+02 -2.13 2 positions_6nt_m1 -4.8 693 201279 14605 6.765270e-02 7.516617e-02 16227.02 1.000000e+00 1.360000e+02 -2.13 3 positions_6nt_m1 -4.7 606 201885 13999 6.484561e-02 7.201084e-02 15545.84 1.000000e+00 1.360000e+02 -2.13 4 positions_6nt_m1 -4.6 534 202419 13465 6.237204e-02 6.902197e-02 14900.60 1.000000e+00 1.360000e+02 -2.13 5 positions_6nt_m1 -4.5 512 202931 12953 6.000037e-02 6.662985e-02 14384.19 1.000000e+00 1.360000e+02 -2.13 6 positions_6nt_m1 -4.4 427 203358 12526 5.802244e-02 6.381181e-02 13775.82 1.000000e+00 1.360000e+02 -2.13 7 positions_6nt_m1 -4.3 447 203805 12079 5.595186e-02 6.174112e-02 13328.80 1.000000e+00 1.360000e+02 -2.13 8 positions_6nt_m1 -4.2 399 204204 11680 5.410363e-02 5.967150e-02 12882.00 1.000000e+00 1.360000e+02 -2.13 9 positions_6nt_m1 -4.1 384 204588 11296 5.232488e-02 5.738341e-02 12388.04 1.000000e+00 1.360000e+02 -2.13 10 positions_6nt_m1 -4.0 325 204913 10971 5.081943e-02 5.586148e-02 12059.49 1.000000e+00 1.360000e+02 -2.13 11 positions_6nt_m1 -3.9 266 205179 10705 4.958727e-02 5.393929e-02 11644.52 1.000000e+00 1.360000e+02 -2.13 12 positions_6nt_m1 -3.8 310 205489 10395 4.815130e-02 5.248903e-02 11331.44 1.000000e+00 1.360000e+02 -2.13 13 positions_6nt_m1 -3.7 250 205739 10145 4.699326e-02 5.099514e-02 11008.93 1.000000e+00 1.360000e+02 -2.13 14 positions_6nt_m1 -3.6 251 205990 9894 4.583059e-02 4.977572e-02 10745.68 1.000000e+00 1.360000e+02 -2.13 15 positions_6nt_m1 -3.5 262 206252 9632 4.461697e-02 4.846461e-02 10462.64 1.000000e+00 1.360000e+02 -2.13 16 positions_6nt_m1 -3.4 243 206495 9389 4.349135e-02 4.698428e-02 10143.06 1.000000e+00 1.360000e+02 -2.13 17 positions_6nt_m1 -3.3 267 206762 9122 4.225456e-02 4.577882e-02 9882.82 1.000000e+00 1.360000e+02 -2.13 18 positions_6nt_m1 -3.2 240 207002 8882 4.114285e-02 4.461722e-02 9632.05 1.000000e+00 1.360000e+02 -2.13 19 positions_6nt_m1 -3.1 235 207237 8647 4.005429e-02 4.341731e-02 9373.02 1.000000e+00 1.360000e+02 -2.13 20 positions_6nt_m1 -3.0 222 207459 8425 3.902595e-02 4.220220e-02 9110.70 1.000000e+00 1.360000e+02 -2.13 21 positions_6nt_m1 -2.9 283 207742 8142 3.771505e-02 4.081646e-02 8811.54 1.000000e+00 1.360000e+02 -2.13 22 positions_6nt_m1 -2.8 297 208039 7845 3.633930e-02 3.953573e-02 8535.05 1.000000e+00 1.360000e+02 -2.13 23 positions_6nt_m1 -2.7 275 208314 7570 3.506545e-02 3.812958e-02 8231.49 1.000000e+00 1.360000e+02 -2.13 24 positions_6nt_m1 -2.6 321 208635 7249 3.357853e-02 3.691733e-02 7969.79 1.000000e+00 1.360000e+02 -2.13 25 positions_6nt_m1 -2.5 322 208957 6927 3.208697e-02 3.543714e-02 7650.24 1.000000e+00 1.360000e+02 -2.13 26 positions_6nt_m1 -2.4 345 209302 6582 3.048888e-02 3.384982e-02 7307.57 1.000000e+00 1.360000e+02 -2.13 27 positions_6nt_m1 -2.3 289 209591 6293 2.915018e-02 3.232737e-02 6978.90 1.000000e+00 1.360000e+02 -2.13 28 positions_6nt_m1 -2.2 238 209829 6055 2.804773e-02 3.095457e-02 6682.53 1.000000e+00 1.360000e+02 -2.13 29 positions_6nt_m1 -2.1 293 210122 5762 2.669051e-02 2.948022e-02 6364.25 1.000000e+00 1.360000e+02 -2.13 30 positions_6nt_m1 -2.0 304 210426 5458 2.528233e-02 2.798670e-02 6041.83 1.000000e+00 1.360000e+02 -2.13 31 positions_6nt_m1 -1.9 264 210690 5194 2.405944e-02 2.662674e-02 5748.23 1.000000e+00 1.360000e+02 -2.13 32 positions_6nt_m1 -1.8 293 210983 4901 2.270222e-02 2.511492e-02 5421.86 1.000000e+00 1.360000e+02 -2.13 33 positions_6nt_m1 -1.7 266 211249 4635 2.147006e-02 2.385893e-02 5150.71 1.000000e+00 1.360000e+02 -2.13 34 positions_6nt_m1 -1.6 248 211497 4387 2.032129e-02 2.269873e-02 4900.25 1.000000e+00 1.360000e+02 -2.13 35 positions_6nt_m1 -1.5 237 211734 4150 1.922346e-02 2.135822e-02 4610.86 1.000000e+00 1.360000e+02 -2.13 36 positions_6nt_m1 -1.4 204 211938 3946 1.827850e-02 2.036619e-02 4396.69 1.000000e+00 1.360000e+02 -2.13 37 positions_6nt_m1 -1.3 228 212166 3718 1.722237e-02 1.919335e-02 4143.50 1.000000e+00 1.360000e+02 -2.13 38 positions_6nt_m1 -1.2 207 212373 3511 1.626351e-02 1.826726e-02 3943.57 1.000000e+00 1.360000e+02 -2.13 39 positions_6nt_m1 -1.1 210 212583 3301 1.529076e-02 1.729942e-02 3734.63 1.000000e+00 1.360000e+02 -2.13 40 positions_6nt_m1 -1.0 191 212774 3110 1.440602e-02 1.628026e-02 3514.62 1.000000e+00 1.360000e+02 -2.13 41 positions_6nt_m1 -0.9 171 212945 2939 1.361392e-02 1.547498e-02 3340.77 1.000000e+00 1.360000e+02 -2.13 42 positions_6nt_m1 -0.8 176 213121 2763 1.279866e-02 1.466543e-02 3166.00 1.000000e+00 1.360000e+02 -2.13 43 positions_6nt_m1 -0.7 142 213263 2621 1.214089e-02 1.375767e-02 2970.03 1.000000e+00 1.360000e+02 -2.13 44 positions_6nt_m1 -0.6 122 213385 2499 1.157577e-02 1.306705e-02 2820.94 1.000000e+00 1.360000e+02 -2.13 45 positions_6nt_m1 -0.5 136 213521 2363 1.094579e-02 1.237259e-02 2671.02 1.000000e+00 1.360000e+02 -2.13 46 positions_6nt_m1 -0.4 92 213613 2271 1.051964e-02 1.182850e-02 2553.56 1.000000e+00 1.360000e+02 -2.13 47 positions_6nt_m1 -0.3 87 213700 2184 1.011664e-02 1.133699e-02 2447.45 1.000000e+00 1.360000e+02 -2.13 48 positions_6nt_m1 -0.2 81 213781 2103 9.741433e-03 1.087248e-02 2347.17 9.999999e-01 1.360000e+02 -2.13 49 positions_6nt_m1 -0.1 71 213852 2032 9.412549e-03 1.044025e-02 2253.86 9.999991e-01 1.359999e+02 -2.13 50 positions_6nt_m1 0.0 61 213913 1971 9.129988e-03 1.002316e-02 2163.82 9.999887e-01 1.359985e+02 -2.13 51 positions_6nt_m1 0.1 49 213962 1922 8.903012e-03 9.718083e-03 2097.96 9.999564e-01 1.359941e+02 -2.13 52 positions_6nt_m1 0.2 70 214032 1852 8.578761e-03 9.369393e-03 2022.68 9.999469e-01 1.359928e+02 -2.13 53 positions_6nt_m1 0.3 57 214089 1795 8.314727e-03 9.061988e-03 1956.32 9.999018e-01 1.359866e+02 -2.13 54 positions_6nt_m1 0.4 73 214162 1722 7.976580e-03 8.778883e-03 1895.20 9.999762e-01 1.359968e+02 -2.13 55 positions_6nt_m1 0.5 42 214204 1680 7.782029e-03 8.492695e-03 1833.42 9.998730e-01 1.359827e+02 -2.13 56 positions_6nt_m1 0.6 47 214251 1633 7.564318e-03 8.220756e-03 1774.71 9.997007e-01 1.359593e+02 -2.13 57 positions_6nt_m1 0.7 53 214304 1580 7.318813e-03 7.946790e-03 1715.57 9.995796e-01 1.359428e+02 -2.13 58 positions_6nt_m1 0.8 48 214352 1532 7.096469e-03 7.688856e-03 1659.89 9.993155e-01 1.359069e+02 -2.13 59 positions_6nt_m1 0.9 49 214401 1483 6.869494e-03 7.360101e-03 1588.91 9.965934e-01 1.355367e+02 -2.13 60 positions_6nt_m1 1.0 72 214473 1411 6.535978e-03 7.098623e-03 1532.46 9.992247e-01 1.358946e+02 -2.13 61 positions_6nt_m1 1.1 64 214537 1347 6.239520e-03 6.824571e-03 1473.30 9.996096e-01 1.359469e+02 -2.13 62 positions_6nt_m1 1.2 68 214605 1279 5.924533e-03 6.470856e-03 1396.94 9.993614e-01 1.359132e+02 -2.13 63 positions_6nt_m1 1.3 70 214675 1209 5.600282e-03 6.151122e-03 1327.92 9.995711e-01 1.359417e+02 -2.13 64 positions_6nt_m1 1.4 73 214748 1136 5.262134e-03 5.818362e-03 1256.08 9.997339e-01 1.359638e+02 -2.13 65 positions_6nt_m1 1.5 55 214803 1081 5.007365e-03 5.477426e-03 1182.48 9.987065e-01 1.358241e+02 -2.13 66 positions_6nt_m1 1.6 57 214860 1024 4.743332e-03 5.157036e-03 1113.31 9.968427e-01 1.355706e+02 -2.13 67 positions_6nt_m1 1.7 60 214920 964 4.465402e-03 4.808714e-03 1038.11 9.904796e-01 1.347052e+02 -2.13 68 positions_6nt_m1 1.8 61 214981 903 4.182841e-03 4.547322e-03 981.68 9.948084e-01 1.352939e+02 -2.13 69 positions_6nt_m1 1.9 70 215051 833 3.858589e-03 4.256349e-03 918.87 9.981113e-01 1.357431e+02 -2.13 70 positions_6nt_m1 2.0 48 215099 785 3.636246e-03 3.960046e-03 854.90 9.926779e-01 1.350042e+02 -2.13 71 positions_6nt_m1 2.1 48 215147 737 3.413902e-03 3.668104e-03 791.88 9.766579e-01 1.328255e+02 -2.12 72 positions_6nt_m1 2.2 66 215213 671 3.108179e-03 3.445201e-03 743.76 9.968386e-01 1.355700e+02 -2.13 73 positions_6nt_m1 2.3 36 215249 635 2.941422e-03 3.189464e-03 688.55 9.814403e-01 1.334759e+02 -2.13 74 positions_6nt_m1 2.4 49 215298 586 2.714446e-03 2.998564e-03 647.34 9.932003e-01 1.350752e+02 -2.13 75 positions_6nt_m1 2.5 42 215340 544 2.519895e-03 2.780895e-03 600.35 9.907251e-01 1.347386e+02 -2.13 76 positions_6nt_m1 2.6 55 215395 489 2.265126e-03 2.564881e-03 553.71 9.976347e-01 1.356783e+02 -2.13 77 positions_6nt_m1 2.7 27 215422 462 2.140058e-03 2.352807e-03 507.93 9.815844e-01 1.334955e+02 -2.13 78 positions_6nt_m1 2.8 47 215469 415 1.922346e-03 2.225799e-03 480.51 9.989652e-01 1.358593e+02 -2.13 79 positions_6nt_m1 2.9 31 215500 384 1.778750e-03 2.050082e-03 442.58 9.979416e-01 1.357201e+02 -2.13 80 positions_6nt_m1 3.0 34 215534 350 1.621256e-03 1.901479e-03 410.50 9.989804e-01 1.358613e+02 -2.13 81 positions_6nt_m1 3.1 33 215567 317 1.468395e-03 1.741961e-03 376.06 9.991891e-01 1.358897e+02 -2.13 82 positions_6nt_m1 3.2 12 215579 305 1.412809e-03 1.606592e-03 346.83 9.896827e-01 1.345969e+02 -2.13 83 positions_6nt_m1 3.3 11 215590 294 1.361855e-03 1.500432e-03 323.92 9.563122e-01 1.300585e+02 -2.11 84 positions_6nt_m1 3.4 22 215612 272 1.259948e-03 1.412045e-03 304.84 9.736504e-01 1.324165e+02 -2.12 85 positions_6nt_m1 3.5 16 215628 256 1.185833e-03 1.328880e-03 286.88 9.699030e-01 1.319068e+02 -2.12 86 positions_6nt_m1 3.6 13 215641 243 1.125615e-03 1.245466e-03 268.87 9.480788e-01 1.289387e+02 -2.11 87 positions_6nt_m1 3.7 7 215648 236 1.093190e-03 1.191830e-03 257.29 9.144844e-01 1.243699e+02 -2.09 88 positions_6nt_m1 3.8 10 215658 226 1.046868e-03 1.139379e-03 245.97 9.055788e-01 1.231587e+02 -2.09 89 positions_6nt_m1 3.9 8 215666 218 1.009811e-03 1.087572e-03 234.79 8.712026e-01 1.184836e+02 -2.07 90 positions_6nt_m1 4.0 4 215670 214 9.912823e-04 1.042281e-03 225.01 7.773206e-01 1.057156e+02 -2.02 91 positions_6nt_m1 4.1 10 215680 204 9.449607e-04 9.900878e-04 213.74 7.565136e-01 1.028858e+02 -2.01 92 positions_6nt_m1 4.2 3 215683 201 9.310642e-04 9.638047e-04 208.07 6.972586e-01 9.482717e+01 -1.98 93 positions_6nt_m1 4.3 5 215688 196 9.079034e-04 9.212327e-04 198.88 5.903528e-01 8.028798e+01 -1.90 94 positions_6nt_m1 4.4 5 215693 191 8.847426e-04 8.906904e-04 192.28 5.465239e-01 7.432725e+01 -1.87 95 positions_6nt_m1 4.6 5 215698 186 8.615818e-04 8.141347e-04 175.76 2.293385e-01 3.119003e+01 -1.49 96 positions_6nt_m1 4.7 11 215709 175 8.106280e-04 7.900879e-04 170.57 3.771703e-01 5.129516e+01 -1.71 97 positions_6nt_m1 4.8 9 215718 166 7.689386e-04 7.481589e-04 161.51 3.723884e-01 5.064483e+01 -1.70 98 positions_6nt_m1 4.9 5 215723 161 7.457778e-04 7.234782e-04 156.19 3.605376e-01 4.903312e+01 -1.69 99 positions_6nt_m1 5.0 9 215732 152 7.040883e-04 6.744187e-04 145.59 3.085294e-01 4.196000e+01 -1.62 100 positions_6nt_m1 5.1 11 215743 141 6.531346e-04 6.229607e-04 134.49 2.983248e-01 4.057218e+01 -1.61 101 positions_6nt_m1 5.2 11 215754 130 6.021808e-04 5.894336e-04 127.25 4.153380e-01 5.648597e+01 -1.75 102 positions_6nt_m1 5.3 7 215761 123 5.697557e-04 5.326053e-04 114.98 2.390256e-01 3.250748e+01 -1.51 103 positions_6nt_m1 5.4 9 215770 114 5.280663e-04 4.945015e-04 106.75 2.538750e-01 3.452700e+01 -1.54 104 positions_6nt_m1 5.5 14 215784 100 4.632160e-04 4.585806e-04 99.00 4.732759e-01 6.436552e+01 -1.81 105 positions_6nt_m1 5.6 6 215790 94 4.354231e-04 4.160540e-04 89.82 3.433271e-01 4.669249e+01 -1.67 106 positions_6nt_m1 5.7 3 215793 91 4.215266e-04 3.804540e-04 82.13 1.771057e-01 2.408637e+01 -1.38 107 positions_6nt_m1 5.8 8 215801 83 3.844693e-04 3.552405e-04 76.69 2.500744e-01 3.401012e+01 -1.53 108 positions_6nt_m1 5.9 7 215808 76 3.520442e-04 3.218821e-04 69.49 2.324022e-01 3.160670e+01 -1.50 109 positions_6nt_m1 6.0 5 215813 71 3.288834e-04 3.006879e-04 64.91 2.406051e-01 3.272229e+01 -1.51 110 positions_6nt_m1 6.1 5 215818 66 3.057226e-04 2.711197e-04 58.53 1.800010e-01 2.448013e+01 -1.39 111 positions_6nt_m1 6.2 6 215824 60 2.779296e-04 2.485669e-04 53.66 2.101984e-01 2.858699e+01 -1.46 112 positions_6nt_m1 6.3 4 215828 56 2.594010e-04 2.226386e-04 48.06 1.422557e-01 1.934678e+01 -1.29 113 positions_6nt_m1 6.4 8 215836 48 2.223437e-04 1.987239e-04 42.90 2.372165e-01 3.226145e+01 -1.51 114 positions_6nt_m1 6.5 5 215841 43 1.991829e-04 1.864053e-04 40.24 3.523820e-01 4.792396e+01 -1.68 115 positions_6nt_m1 6.6 8 215849 35 1.621256e-04 1.529405e-04 33.02 3.877912e-01 5.273960e+01 -1.72 116 positions_6nt_m1 6.7 4 215853 31 1.435970e-04 1.459349e-04 31.50 5.596233e-01 7.610877e+01 -1.88 117 positions_6nt_m1 6.8 3 215856 28 1.297005e-04 1.282500e-04 27.69 5.014822e-01 6.820157e+01 -1.83 118 positions_6nt_m1 6.9 2 215858 26 1.204362e-04 1.139137e-04 24.59 4.146606e-01 5.639384e+01 -1.75 119 positions_6nt_m1 7.0 2 215860 24 1.111718e-04 1.018565e-04 21.99 3.616785e-01 4.918827e+01 -1.69 120 positions_6nt_m1 7.1 4 215864 20 9.264320e-05 8.913378e-05 19.24 4.614686e-01 6.275973e+01 -1.80 121 positions_6nt_m1 7.3 1 215865 19 8.801104e-05 7.136142e-05 15.41 2.102933e-01 2.859989e+01 -1.46 122 positions_6nt_m1 7.4 1 215866 18 8.337888e-05 6.581931e-05 14.21 1.880349e-01 2.557275e+01 -1.41 123 positions_6nt_m1 8.2 1 215867 17 7.874672e-05 4.272785e-05 9.22 1.377621e-02 1.873565e+00 -0.27 124 positions_6nt_m1 8.3 1 215868 16 7.411456e-05 4.014197e-05 8.67 1.623375e-02 2.207790e+00 -0.34 125 positions_6nt_m1 8.6 2 215870 14 6.485024e-05 3.500288e-05 7.56 2.277949e-02 3.098011e+00 -0.49 126 positions_6nt_m1 8.8 2 215872 12 5.558592e-05 3.212488e-05 6.94 5.047292e-02 6.864318e+00 -0.84 127 positions_6nt_m1 8.9 1 215873 11 5.095376e-05 3.004372e-05 6.49 6.605229e-02 8.983112e+00 -0.95 128 positions_6nt_m1 9.1 1 215874 10 4.632160e-05 2.313565e-05 4.99 3.162989e-02 4.301665e+00 -0.63 129 positions_6nt_m1 9.3 1 215875 9 4.168944e-05 1.784902e-05 3.85 1.730712e-02 2.353769e+00 -0.37 130 positions_6nt_m1 9.6 1 215876 8 3.705728e-05 1.245496e-05 2.69 6.465985e-03 8.793740e-01 0.06 131 positions_6nt_m1 9.8 1 215877 7 3.242512e-05 9.956621e-06 2.15 6.616956e-03 8.999061e-01 0.05 132 positions_6nt_m1 9.9 2 215879 5 2.316080e-05 9.956621e-06 2.15 6.714225e-02 9.131346e+00 -0.96 133 positions_6nt_m1 10.0 1 215880 4 1.852864e-05 9.144976e-06 1.97 1.382568e-01 1.880293e+01 -1.27 134 positions_6nt_m1 10.1 2 215882 2 9.264320e-06 7.307774e-06 1.58 4.678090e-01 6.362203e+01 -1.80 135 positions_6nt_m1 10.9 2 215884 0 0.000000e+00 1.087636e-06 0.23 1.000000e+00 1.360000e+02 -2.13 136 ; Number of sequences scanned 109 ; Sum of sequence lengths 108923 ; N residues 0 ; Matches per matrix ; matrix name matches scored ; 1 positions_6nt_m1 215882 215882 ; TOTAL 215882 215882 ; Host name biow ; Job started 2014-09-05.195243 ; Job done 2014-09-05.195244 ; Seconds 0.91 ; user 0.91 ; system 0.04 ; cuser 0.23 ; csystem 0.03