; matrix-scan -v 1 -quick -seq_format fasta -i $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2.tf -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score -5 -bginput -markov 1 -return distrib -return occ_proba -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_scan_mkv1_enrichment.tab ; Quick counting mode ; Input files ; input /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/data/sequences/peak-motifs_test_maxlen1000.fasta ; Matrix files ; matrix 1 /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2.tf ; Sequence format fasta ; Output files ; output /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_scan_mkv1_enrichment.tab ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.26223 ; c 0.24007 ; g 0.23539 ; t 0.26231 ; Thresholds lower upper ; score -5 NA ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 positions_6nt_m2 11 4 1 -7.700 10.100 17.800 a:0.262 c:0.240 g:0.235 t:0.262 ; ; Score distribution #matrix score occ occ_cum inv_cum inv_cum_freq occ_prior exp_occ occ_Pval occ_Eval occ_sig occ_sig_rank positions_6nt_m2 -5.0 2995 55166 160500 7.442098e-01 7.674236e-01 165506.41 1.000000e+00 1.210000e+02 -2.08 1 positions_6nt_m2 -4.9 3498 58664 157002 7.279902e-01 7.527812e-01 162348.55 1.000000e+00 1.210000e+02 -2.08 2 positions_6nt_m2 -4.8 4254 62918 152748 7.082651e-01 7.385514e-01 159279.68 1.000000e+00 1.210000e+02 -2.08 3 positions_6nt_m2 -4.7 4593 67511 148155 6.869682e-01 7.185319e-01 154962.18 1.000000e+00 1.210000e+02 -2.08 4 positions_6nt_m2 -4.6 4890 72401 143265 6.642942e-01 6.982113e-01 150579.75 1.000000e+00 1.210000e+02 -2.08 5 positions_6nt_m2 -4.5 4882 77283 138383 6.416572e-01 6.783418e-01 146294.59 1.000000e+00 1.210000e+02 -2.08 6 positions_6nt_m2 -4.4 4861 82144 133522 6.191176e-01 6.537292e-01 140986.51 1.000000e+00 1.210000e+02 -2.08 7 positions_6nt_m2 -4.3 4415 86559 129107 5.986460e-01 6.336197e-01 136649.58 1.000000e+00 1.210000e+02 -2.08 8 positions_6nt_m2 -4.2 4159 90718 124948 5.793615e-01 6.125313e-01 132101.57 1.000000e+00 1.210000e+02 -2.08 9 positions_6nt_m2 -4.1 3474 94192 121474 5.632532e-01 5.914047e-01 127545.29 1.000000e+00 1.210000e+02 -2.08 10 positions_6nt_m2 -4.0 2918 97110 118556 5.497229e-01 5.766534e-01 124363.95 1.000000e+00 1.210000e+02 -2.08 11 positions_6nt_m2 -3.9 2417 99527 116139 5.385158e-01 5.608194e-01 120949.12 1.000000e+00 1.210000e+02 -2.08 12 positions_6nt_m2 -3.8 2169 101696 113970 5.284585e-01 5.490201e-01 118404.41 1.000000e+00 1.210000e+02 -2.08 13 positions_6nt_m2 -3.7 1963 103659 112007 5.193564e-01 5.387622e-01 116192.15 1.000000e+00 1.210000e+02 -2.08 14 positions_6nt_m2 -3.6 2160 105819 109847 5.093409e-01 5.301282e-01 114330.09 1.000000e+00 1.210000e+02 -2.08 15 positions_6nt_m2 -3.5 2236 108055 107611 4.989729e-01 5.208292e-01 112324.63 1.000000e+00 1.210000e+02 -2.08 16 positions_6nt_m2 -3.4 2970 111025 104641 4.852016e-01 5.093391e-01 109846.63 1.000000e+00 1.210000e+02 -2.08 17 positions_6nt_m2 -3.3 3290 114315 101351 4.699464e-01 4.970643e-01 107199.37 1.000000e+00 1.210000e+02 -2.08 18 positions_6nt_m2 -3.2 3985 118300 97366 4.514687e-01 4.835786e-01 104290.99 1.000000e+00 1.210000e+02 -2.08 19 positions_6nt_m2 -3.1 4290 122590 93076 4.315768e-01 4.664634e-01 100599.82 1.000000e+00 1.210000e+02 -2.08 20 positions_6nt_m2 -3.0 4679 127269 88397 4.098811e-01 4.464956e-01 96293.47 1.000000e+00 1.210000e+02 -2.08 21 positions_6nt_m2 -2.9 4767 132036 83630 3.877773e-01 4.228604e-01 91196.19 1.000000e+00 1.210000e+02 -2.08 22 positions_6nt_m2 -2.8 4988 137024 78642 3.646489e-01 4.001728e-01 86303.26 1.000000e+00 1.210000e+02 -2.08 23 positions_6nt_m2 -2.7 4634 141658 74008 3.431618e-01 3.777490e-01 81467.24 1.000000e+00 1.210000e+02 -2.08 24 positions_6nt_m2 -2.6 4199 145857 69809 3.236918e-01 3.580153e-01 77211.38 1.000000e+00 1.210000e+02 -2.08 25 positions_6nt_m2 -2.5 3585 149442 66224 3.070688e-01 3.380046e-01 72895.76 1.000000e+00 1.210000e+02 -2.08 26 positions_6nt_m2 -2.4 2801 152243 63423 2.940811e-01 3.191807e-01 68836.11 1.000000e+00 1.210000e+02 -2.08 27 positions_6nt_m2 -2.3 2294 154537 61129 2.834442e-01 3.050096e-01 65779.90 1.000000e+00 1.210000e+02 -2.08 28 positions_6nt_m2 -2.2 1756 156293 59373 2.753020e-01 2.945143e-01 63516.43 1.000000e+00 1.210000e+02 -2.08 29 positions_6nt_m2 -2.1 1547 157840 57826 2.681288e-01 2.853152e-01 61532.51 1.000000e+00 1.210000e+02 -2.08 30 positions_6nt_m2 -2.0 1371 159211 56455 2.617717e-01 2.774022e-01 59825.95 1.000000e+00 1.210000e+02 -2.08 31 positions_6nt_m2 -1.9 1533 160744 54922 2.546635e-01 2.704934e-01 58335.96 1.000000e+00 1.210000e+02 -2.08 32 positions_6nt_m2 -1.8 1661 162405 53261 2.469617e-01 2.628446e-01 56686.39 1.000000e+00 1.210000e+02 -2.08 33 positions_6nt_m2 -1.7 2010 164415 51251 2.376417e-01 2.551687e-01 55030.95 1.000000e+00 1.210000e+02 -2.08 34 positions_6nt_m2 -1.6 2405 166820 48846 2.264902e-01 2.469801e-01 53264.95 1.000000e+00 1.210000e+02 -2.08 35 positions_6nt_m2 -1.5 2817 169637 46029 2.134282e-01 2.351573e-01 50715.20 1.000000e+00 1.210000e+02 -2.08 36 positions_6nt_m2 -1.4 3100 172737 42929 1.990541e-01 2.240341e-01 48316.32 1.000000e+00 1.210000e+02 -2.08 37 positions_6nt_m2 -1.3 3191 175928 39738 1.842580e-01 2.084688e-01 44959.42 1.000000e+00 1.210000e+02 -2.08 38 positions_6nt_m2 -1.2 3206 179134 36532 1.693923e-01 1.952669e-01 42112.23 1.000000e+00 1.210000e+02 -2.08 39 positions_6nt_m2 -1.1 3181 182315 33351 1.546426e-01 1.801673e-01 38855.79 1.000000e+00 1.210000e+02 -2.08 40 positions_6nt_m2 -1.0 2794 185109 30557 1.416873e-01 1.641321e-01 35397.54 1.000000e+00 1.210000e+02 -2.08 41 positions_6nt_m2 -0.9 2394 187503 28163 1.305868e-01 1.518592e-01 32750.72 1.000000e+00 1.210000e+02 -2.08 42 positions_6nt_m2 -0.8 1954 189457 26209 1.215264e-01 1.400691e-01 30208.00 1.000000e+00 1.210000e+02 -2.08 43 positions_6nt_m2 -0.7 1494 190951 24715 1.145990e-01 1.290398e-01 27829.38 1.000000e+00 1.210000e+02 -2.08 44 positions_6nt_m2 -0.6 1116 192067 23599 1.094243e-01 1.212057e-01 26139.83 1.000000e+00 1.210000e+02 -2.08 45 positions_6nt_m2 -0.5 881 192948 22718 1.053393e-01 1.151835e-01 24841.05 1.000000e+00 1.210000e+02 -2.08 46 positions_6nt_m2 -0.4 742 193690 21976 1.018988e-01 1.104700e-01 23824.52 1.000000e+00 1.210000e+02 -2.08 47 positions_6nt_m2 -0.3 749 194439 21227 9.842580e-02 1.068789e-01 23050.04 1.000000e+00 1.210000e+02 -2.08 48 positions_6nt_m2 -0.2 801 195240 20426 9.471171e-02 1.033449e-01 22287.89 1.000000e+00 1.210000e+02 -2.08 49 positions_6nt_m2 -0.1 869 196109 19557 9.068231e-02 9.973176e-02 21508.65 1.000000e+00 1.210000e+02 -2.08 50 positions_6nt_m2 0.0 1089 197198 18468 8.563281e-02 9.537002e-02 20567.98 1.000000e+00 1.210000e+02 -2.08 51 positions_6nt_m2 0.1 1171 198369 17297 8.020309e-02 9.117284e-02 19662.79 1.000000e+00 1.210000e+02 -2.08 52 positions_6nt_m2 0.2 1384 199753 15913 7.378573e-02 8.530164e-02 18396.58 1.000000e+00 1.210000e+02 -2.08 53 positions_6nt_m2 0.3 1383 201136 14530 6.737301e-02 7.910182e-02 17059.49 1.000000e+00 1.210000e+02 -2.08 54 positions_6nt_m2 0.4 1436 202572 13094 6.071453e-02 7.254562e-02 15645.55 1.000000e+00 1.210000e+02 -2.08 55 positions_6nt_m2 0.5 1322 203894 11772 5.458466e-02 6.650749e-02 14343.34 1.000000e+00 1.210000e+02 -2.08 56 positions_6nt_m2 0.6 1318 205212 10454 4.847333e-02 5.977866e-02 12892.17 1.000000e+00 1.210000e+02 -2.08 57 positions_6nt_m2 0.7 1081 206293 9373 4.346092e-02 5.360178e-02 11560.03 1.000000e+00 1.210000e+02 -2.08 58 positions_6nt_m2 0.8 974 207267 8399 3.894466e-02 4.789200e-02 10328.63 1.000000e+00 1.210000e+02 -2.08 59 positions_6nt_m2 0.9 662 207929 7737 3.587508e-02 4.261258e-02 9190.04 1.000000e+00 1.210000e+02 -2.08 60 positions_6nt_m2 1.0 604 208533 7133 3.307444e-02 3.872050e-02 8350.66 1.000000e+00 1.210000e+02 -2.08 61 positions_6nt_m2 1.1 451 208984 6682 3.098324e-02 3.603670e-02 7771.86 1.000000e+00 1.210000e+02 -2.08 62 positions_6nt_m2 1.2 314 209298 6368 2.952728e-02 3.345552e-02 7215.18 1.000000e+00 1.210000e+02 -2.08 63 positions_6nt_m2 1.3 270 209568 6098 2.827533e-02 3.170775e-02 6838.25 1.000000e+00 1.210000e+02 -2.08 64 positions_6nt_m2 1.4 258 209826 5840 2.707903e-02 3.039508e-02 6555.15 1.000000e+00 1.210000e+02 -2.08 65 positions_6nt_m2 1.5 307 210133 5533 2.565553e-02 2.897034e-02 6247.89 1.000000e+00 1.210000e+02 -2.08 66 positions_6nt_m2 1.6 345 210478 5188 2.405583e-02 2.775771e-02 5986.37 1.000000e+00 1.210000e+02 -2.08 67 positions_6nt_m2 1.7 374 210852 4814 2.232166e-02 2.618006e-02 5646.12 1.000000e+00 1.210000e+02 -2.08 68 positions_6nt_m2 1.8 436 211288 4378 2.030000e-02 2.471987e-02 5331.21 1.000000e+00 1.210000e+02 -2.08 69 positions_6nt_m2 1.9 436 211724 3942 1.827835e-02 2.288297e-02 4935.06 1.000000e+00 1.210000e+02 -2.08 70 positions_6nt_m2 2.0 458 212182 3484 1.615468e-02 2.066003e-02 4455.64 1.000000e+00 1.210000e+02 -2.08 71 positions_6nt_m2 2.1 424 212606 3060 1.418867e-02 1.850243e-02 3990.33 1.000000e+00 1.210000e+02 -2.08 72 positions_6nt_m2 2.2 407 213013 2653 1.230149e-02 1.636608e-02 3529.59 1.000000e+00 1.210000e+02 -2.08 73 positions_6nt_m2 2.3 345 213358 2308 1.070178e-02 1.436803e-02 3098.68 1.000000e+00 1.210000e+02 -2.08 74 positions_6nt_m2 2.4 299 213657 2009 9.315373e-03 1.271803e-02 2742.83 1.000000e+00 1.210000e+02 -2.08 75 positions_6nt_m2 2.5 228 213885 1781 8.258178e-03 1.109305e-02 2392.38 1.000000e+00 1.210000e+02 -2.08 76 positions_6nt_m2 2.6 157 214042 1624 7.530197e-03 9.654105e-03 2082.05 1.000000e+00 1.210000e+02 -2.08 77 positions_6nt_m2 2.7 151 214193 1473 6.830037e-03 8.547545e-03 1843.41 1.000000e+00 1.210000e+02 -2.08 78 positions_6nt_m2 2.8 99 214292 1374 6.370992e-03 7.795955e-03 1681.31 1.000000e+00 1.210000e+02 -2.08 79 positions_6nt_m2 2.9 88 214380 1286 5.962952e-03 7.155762e-03 1543.25 1.000000e+00 1.210000e+02 -2.08 80 positions_6nt_m2 3.0 67 214447 1219 5.652285e-03 6.692844e-03 1443.41 1.000000e+00 1.210000e+02 -2.08 81 positions_6nt_m2 3.1 90 214537 1129 5.234971e-03 6.248867e-03 1347.66 1.000000e+00 1.210000e+02 -2.08 82 positions_6nt_m2 3.2 69 214606 1060 4.915030e-03 5.924493e-03 1277.71 1.000000e+00 1.210000e+02 -2.08 83 positions_6nt_m2 3.3 76 214682 984 4.562632e-03 5.549959e-03 1196.93 1.000000e+00 1.210000e+02 -2.08 84 positions_6nt_m2 3.4 85 214767 899 4.168502e-03 5.216799e-03 1125.08 1.000000e+00 1.210000e+02 -2.08 85 positions_6nt_m2 3.5 92 214859 807 3.741915e-03 4.828132e-03 1041.26 1.000000e+00 1.210000e+02 -2.08 86 positions_6nt_m2 3.6 100 214959 707 3.278232e-03 4.344587e-03 936.98 1.000000e+00 1.210000e+02 -2.08 87 positions_6nt_m2 3.7 102 215061 605 2.805277e-03 3.879342e-03 836.64 1.000000e+00 1.210000e+02 -2.08 88 positions_6nt_m2 3.8 98 215159 507 2.350868e-03 3.485097e-03 751.61 1.000000e+00 1.210000e+02 -2.08 89 positions_6nt_m2 3.9 81 215240 426 1.975286e-03 3.022666e-03 651.88 1.000000e+00 1.210000e+02 -2.08 90 positions_6nt_m2 4.0 66 215306 360 1.669256e-03 2.582030e-03 556.85 1.000000e+00 1.210000e+02 -2.08 91 positions_6nt_m2 4.1 56 215362 304 1.409594e-03 2.157079e-03 465.21 1.000000e+00 1.210000e+02 -2.08 92 positions_6nt_m2 4.2 36 215398 268 1.242668e-03 1.855778e-03 400.23 1.000000e+00 1.210000e+02 -2.08 93 positions_6nt_m2 4.3 28 215426 240 1.112837e-03 1.552774e-03 334.88 1.000000e+00 1.210000e+02 -2.08 94 positions_6nt_m2 4.4 19 215445 221 1.024737e-03 1.341620e-03 289.34 9.999877e-01 1.209985e+02 -2.08 95 positions_6nt_m2 4.5 18 215463 203 9.412747e-04 1.208761e-03 260.69 9.999093e-01 1.209890e+02 -2.08 96 positions_6nt_m2 4.6 22 215485 181 8.392646e-04 1.074028e-03 231.63 9.997553e-01 1.209704e+02 -2.08 97 positions_6nt_m2 4.7 16 215501 165 7.650755e-04 1.002725e-03 216.25 9.998767e-01 1.209851e+02 -2.08 98 positions_6nt_m2 4.8 18 215519 147 6.816127e-04 9.214825e-04 198.73 9.999472e-01 1.209936e+02 -2.08 99 positions_6nt_m2 4.9 6 215525 141 6.537918e-04 8.615110e-04 185.80 9.997326e-01 1.209677e+02 -2.08 100 positions_6nt_m2 5.0 22 215547 119 5.517817e-04 7.970089e-04 171.89 9.999916e-01 1.209990e+02 -2.08 101 positions_6nt_m2 5.1 20 215567 99 4.590453e-04 7.399922e-04 159.59 9.999999e-01 1.210000e+02 -2.08 102 positions_6nt_m2 5.2 11 215578 88 4.080402e-04 6.717015e-04 144.86 9.999999e-01 1.210000e+02 -2.08 103 positions_6nt_m2 5.3 17 215595 71 3.292143e-04 5.925880e-04 127.80 1.000000e+00 1.210000e+02 -2.08 104 positions_6nt_m2 5.4 13 215608 58 2.689356e-04 5.151491e-04 111.10 1.000000e+00 1.210000e+02 -2.08 105 positions_6nt_m2 5.5 7 215615 51 2.364779e-04 4.553443e-04 98.20 9.999999e-01 1.210000e+02 -2.08 106 positions_6nt_m2 5.6 11 215626 40 1.854728e-04 3.755518e-04 80.99 9.999998e-01 1.210000e+02 -2.08 107 positions_6nt_m2 5.7 12 215638 28 1.298310e-04 3.190885e-04 68.82 1.000000e+00 1.210000e+02 -2.08 108 positions_6nt_m2 5.8 4 215642 24 1.112837e-04 2.617326e-04 56.45 9.999996e-01 1.210000e+02 -2.08 109 positions_6nt_m2 5.9 5 215647 19 8.809960e-05 2.146939e-04 46.30 9.999981e-01 1.209998e+02 -2.08 110 positions_6nt_m2 6.0 2 215649 17 7.882596e-05 1.794456e-04 38.70 9.999687e-01 1.209962e+02 -2.08 111 positions_6nt_m2 6.2 5 215654 12 5.564185e-05 1.273179e-04 27.46 9.996789e-01 1.209611e+02 -2.08 112 positions_6nt_m2 6.3 2 215656 10 4.636821e-05 1.109176e-04 23.92 9.995526e-01 1.209459e+02 -2.08 113 positions_6nt_m2 6.4 1 215657 9 4.173139e-05 1.023065e-04 22.06 9.994471e-01 1.209331e+02 -2.08 114 positions_6nt_m2 6.5 2 215659 7 3.245775e-05 9.093923e-05 19.61 9.996635e-01 1.209593e+02 -2.08 115 positions_6nt_m2 6.6 2 215661 5 2.318410e-05 8.418415e-05 18.16 9.999256e-01 1.209910e+02 -2.08 116 positions_6nt_m2 6.7 1 215662 4 1.854728e-05 7.683608e-05 16.57 9.999420e-01 1.209930e+02 -2.08 117 positions_6nt_m2 6.8 1 215663 3 1.391046e-05 7.218121e-05 15.57 9.999761e-01 1.209971e+02 -2.08 118 positions_6nt_m2 6.9 1 215664 2 9.273642e-06 6.309410e-05 13.61 9.999820e-01 1.209978e+02 -2.08 119 positions_6nt_m2 7.2 1 215665 1 4.636821e-06 4.120454e-05 8.89 9.998618e-01 1.209833e+02 -2.08 120 positions_6nt_m2 10.5 1 215666 0 0.000000e+00 1.464933e-07 0.03 1.000000e+00 1.210000e+02 -2.08 121 ; Number of sequences scanned 109 ; Sum of sequence lengths 108923 ; N residues 0 ; Matches per matrix ; matrix name matches scored ; 1 positions_6nt_m2 215665 215665 ; TOTAL 215665 215665 ; Host name biow ; Job started 2014-09-05.195246 ; Job done 2014-09-05.195249 ; Seconds 2.7 ; user 2.7 ; system 0.03 ; cuser 0.23 ; csystem 0.03