; matrix-scan -v 1 -quick -seq_format fasta -i $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_7nt_m1/peak-motifs_positions_7nt_m1.tf -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score -5 -bginput -markov 1 -return distrib -return occ_proba -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_7nt_m1/peak-motifs_positions_7nt_m1_scan_mkv1_enrichment.tab ; Quick counting mode ; Input files ; input /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/data/sequences/peak-motifs_test_maxlen1000.fasta ; Matrix files ; matrix 1 /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_7nt_m1/peak-motifs_positions_7nt_m1.tf ; Sequence format fasta ; Output files ; output /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_7nt_m1/peak-motifs_positions_7nt_m1_scan_mkv1_enrichment.tab ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.26223 ; c 0.24007 ; g 0.23539 ; t 0.26231 ; Thresholds lower upper ; score -5 NA ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 positions_7nt_m1 11 4 1 -21.500 11.600 33.100 a:0.262 c:0.240 g:0.235 t:0.262 ; ; Score distribution #matrix score occ occ_cum inv_cum inv_cum_freq occ_prior exp_occ occ_Pval occ_Eval occ_sig occ_sig_rank positions_7nt_m1 -5.0 976 187667 27999 1.298264e-01 1.345009e-01 29007.14 1.000000e+00 1.310000e+02 -2.12 1 positions_7nt_m1 -4.9 956 188623 27043 1.253936e-01 1.295217e-01 27933.30 1.000000e+00 1.310000e+02 -2.12 2 positions_7nt_m1 -4.8 902 189525 26141 1.212111e-01 1.256014e-01 27087.82 1.000000e+00 1.310000e+02 -2.12 3 positions_7nt_m1 -4.7 830 190355 25311 1.173626e-01 1.210280e-01 26101.51 9.999999e-01 1.310000e+02 -2.12 4 positions_7nt_m1 -4.6 911 191266 24400 1.131384e-01 1.169994e-01 25232.68 1.000000e+00 1.310000e+02 -2.12 5 positions_7nt_m1 -4.5 844 192110 23556 1.092250e-01 1.135015e-01 24478.29 1.000000e+00 1.310000e+02 -2.12 6 positions_7nt_m1 -4.4 876 192986 22680 1.051631e-01 1.091941e-01 23549.34 1.000000e+00 1.310000e+02 -2.12 7 positions_7nt_m1 -4.3 831 193817 21849 1.013099e-01 1.057311e-01 22802.50 1.000000e+00 1.310000e+02 -2.12 8 positions_7nt_m1 -4.2 853 194670 20996 9.735469e-02 1.019149e-01 21979.48 1.000000e+00 1.310000e+02 -2.12 9 positions_7nt_m1 -4.1 829 195499 20167 9.351077e-02 9.761635e-02 21052.43 1.000000e+00 1.310000e+02 -2.12 10 positions_7nt_m1 -4.0 830 196329 19337 8.966221e-02 9.416843e-02 20308.84 1.000000e+00 1.310000e+02 -2.12 11 positions_7nt_m1 -3.9 837 197166 18500 8.578119e-02 9.001269e-02 19412.59 1.000000e+00 1.310000e+02 -2.12 12 positions_7nt_m1 -3.8 825 197991 17675 8.195581e-02 8.622533e-02 18595.79 1.000000e+00 1.310000e+02 -2.12 13 positions_7nt_m1 -3.7 719 198710 16956 7.862194e-02 8.259481e-02 17812.81 1.000000e+00 1.310000e+02 -2.12 14 positions_7nt_m1 -3.6 723 199433 16233 7.526952e-02 7.953257e-02 17152.39 1.000000e+00 1.310000e+02 -2.12 15 positions_7nt_m1 -3.5 686 200119 15547 7.208866e-02 7.633973e-02 16463.81 1.000000e+00 1.310000e+02 -2.12 16 positions_7nt_m1 -3.4 568 200687 14979 6.945494e-02 7.300653e-02 15744.95 1.000000e+00 1.310000e+02 -2.12 17 positions_7nt_m1 -3.3 553 201240 14426 6.689078e-02 7.022222e-02 15144.48 1.000000e+00 1.310000e+02 -2.12 18 positions_7nt_m1 -3.2 529 201769 13897 6.443790e-02 6.785469e-02 14633.88 1.000000e+00 1.310000e+02 -2.12 19 positions_7nt_m1 -3.1 542 202311 13355 6.192474e-02 6.534661e-02 14092.98 1.000000e+00 1.310000e+02 -2.12 20 positions_7nt_m1 -3.0 496 202807 12859 5.962488e-02 6.287286e-02 13559.48 1.000000e+00 1.310000e+02 -2.12 21 positions_7nt_m1 -2.9 513 203320 12346 5.724619e-02 6.028717e-02 13001.83 1.000000e+00 1.310000e+02 -2.12 22 positions_7nt_m1 -2.8 567 203887 11779 5.461711e-02 5.777068e-02 12459.11 1.000000e+00 1.310000e+02 -2.12 23 positions_7nt_m1 -2.7 566 204453 11213 5.199267e-02 5.539765e-02 11947.34 1.000000e+00 1.310000e+02 -2.12 24 positions_7nt_m1 -2.6 527 204980 10686 4.954907e-02 5.319604e-02 11472.52 1.000000e+00 1.310000e+02 -2.12 25 positions_7nt_m1 -2.5 554 205534 10132 4.698027e-02 5.086798e-02 10970.44 1.000000e+00 1.310000e+02 -2.12 26 positions_7nt_m1 -2.4 539 206073 9593 4.448102e-02 4.828041e-02 10412.39 1.000000e+00 1.310000e+02 -2.12 27 positions_7nt_m1 -2.3 453 206526 9140 4.238054e-02 4.607399e-02 9936.55 1.000000e+00 1.310000e+02 -2.12 28 positions_7nt_m1 -2.2 391 206917 8749 4.056755e-02 4.414927e-02 9521.45 1.000000e+00 1.310000e+02 -2.12 29 positions_7nt_m1 -2.1 440 207357 8309 3.852735e-02 4.212170e-02 9084.18 1.000000e+00 1.310000e+02 -2.12 30 positions_7nt_m1 -2.0 389 207746 7920 3.672362e-02 4.021041e-02 8671.98 1.000000e+00 1.310000e+02 -2.12 31 positions_7nt_m1 -1.9 389 208135 7531 3.491990e-02 3.843191e-02 8288.42 1.000000e+00 1.310000e+02 -2.12 32 positions_7nt_m1 -1.8 296 208431 7235 3.354740e-02 3.658677e-02 7890.49 1.000000e+00 1.310000e+02 -2.12 33 positions_7nt_m1 -1.7 294 208725 6941 3.218417e-02 3.497058e-02 7541.93 1.000000e+00 1.310000e+02 -2.12 34 positions_7nt_m1 -1.6 318 209043 6623 3.070967e-02 3.363161e-02 7253.16 1.000000e+00 1.310000e+02 -2.12 35 positions_7nt_m1 -1.5 264 209307 6359 2.948554e-02 3.199815e-02 6900.88 1.000000e+00 1.310000e+02 -2.12 36 positions_7nt_m1 -1.4 303 209610 6056 2.808059e-02 3.078872e-02 6640.05 1.000000e+00 1.310000e+02 -2.12 37 positions_7nt_m1 -1.3 301 209911 5755 2.668490e-02 2.928727e-02 6316.24 1.000000e+00 1.310000e+02 -2.12 38 positions_7nt_m1 -1.2 285 210196 5470 2.536341e-02 2.814808e-02 6070.55 1.000000e+00 1.310000e+02 -2.12 39 positions_7nt_m1 -1.1 262 210458 5208 2.414856e-02 2.685340e-02 5791.34 1.000000e+00 1.310000e+02 -2.12 40 positions_7nt_m1 -1.0 302 210760 4906 2.274824e-02 2.552652e-02 5505.18 1.000000e+00 1.310000e+02 -2.12 41 positions_7nt_m1 -0.9 281 211041 4625 2.144530e-02 2.440300e-02 5262.87 1.000000e+00 1.310000e+02 -2.12 42 positions_7nt_m1 -0.8 264 211305 4361 2.022118e-02 2.319680e-02 5002.74 1.000000e+00 1.310000e+02 -2.12 43 positions_7nt_m1 -0.7 238 211543 4123 1.911761e-02 2.187336e-02 4717.32 1.000000e+00 1.310000e+02 -2.12 44 positions_7nt_m1 -0.6 235 211778 3888 1.802796e-02 2.070788e-02 4465.96 1.000000e+00 1.310000e+02 -2.12 45 positions_7nt_m1 -0.5 231 212009 3657 1.695685e-02 1.954216e-02 4214.56 1.000000e+00 1.310000e+02 -2.12 46 positions_7nt_m1 -0.4 194 212203 3463 1.605731e-02 1.848506e-02 3986.58 1.000000e+00 1.310000e+02 -2.12 47 positions_7nt_m1 -0.3 210 212413 3253 1.508358e-02 1.755061e-02 3785.05 1.000000e+00 1.310000e+02 -2.12 48 positions_7nt_m1 -0.2 166 212579 3087 1.431387e-02 1.664119e-02 3588.92 1.000000e+00 1.310000e+02 -2.12 49 positions_7nt_m1 -0.1 139 212718 2948 1.366935e-02 1.577854e-02 3402.88 1.000000e+00 1.310000e+02 -2.12 50 positions_7nt_m1 0.0 143 212861 2805 1.300628e-02 1.496989e-02 3228.48 1.000000e+00 1.310000e+02 -2.12 51 positions_7nt_m1 0.1 117 212978 2688 1.246377e-02 1.430546e-02 3085.19 1.000000e+00 1.310000e+02 -2.12 52 positions_7nt_m1 0.2 152 213130 2536 1.175898e-02 1.360994e-02 2935.19 1.000000e+00 1.310000e+02 -2.12 53 positions_7nt_m1 0.3 140 213270 2396 1.110982e-02 1.296087e-02 2795.21 1.000000e+00 1.310000e+02 -2.12 54 positions_7nt_m1 0.4 154 213424 2242 1.039575e-02 1.236616e-02 2666.95 1.000000e+00 1.310000e+02 -2.12 55 positions_7nt_m1 0.5 151 213575 2091 9.695593e-03 1.176383e-02 2537.05 1.000000e+00 1.310000e+02 -2.12 56 positions_7nt_m1 0.6 150 213725 1941 9.000070e-03 1.114193e-02 2402.92 1.000000e+00 1.310000e+02 -2.12 57 positions_7nt_m1 0.7 160 213885 1781 8.258178e-03 1.044908e-02 2253.50 1.000000e+00 1.310000e+02 -2.12 58 positions_7nt_m1 0.8 138 214023 1643 7.618297e-03 9.821599e-03 2118.18 1.000000e+00 1.310000e+02 -2.12 59 positions_7nt_m1 0.9 113 214136 1530 7.094336e-03 9.109388e-03 1964.58 1.000000e+00 1.310000e+02 -2.12 60 positions_7nt_m1 1.0 109 214245 1421 6.588923e-03 8.556215e-03 1845.28 1.000000e+00 1.310000e+02 -2.12 61 positions_7nt_m1 1.1 105 214350 1316 6.102056e-03 8.053987e-03 1736.96 1.000000e+00 1.310000e+02 -2.12 62 positions_7nt_m1 1.2 85 214435 1231 5.707927e-03 7.530654e-03 1624.10 1.000000e+00 1.310000e+02 -2.12 63 positions_7nt_m1 1.3 59 214494 1172 5.434354e-03 7.082386e-03 1527.42 1.000000e+00 1.310000e+02 -2.12 64 positions_7nt_m1 1.4 54 214548 1118 5.183966e-03 6.728316e-03 1451.06 1.000000e+00 1.310000e+02 -2.12 65 positions_7nt_m1 1.5 41 214589 1077 4.993856e-03 6.337432e-03 1366.76 1.000000e+00 1.310000e+02 -2.12 66 positions_7nt_m1 1.6 58 214647 1019 4.724921e-03 6.038865e-03 1302.37 1.000000e+00 1.310000e+02 -2.12 67 positions_7nt_m1 1.7 63 214710 956 4.432801e-03 5.696578e-03 1228.55 1.000000e+00 1.310000e+02 -2.12 68 positions_7nt_m1 1.8 60 214770 896 4.154592e-03 5.416548e-03 1168.16 1.000000e+00 1.310000e+02 -2.12 69 positions_7nt_m1 1.9 62 214832 834 3.867109e-03 5.136536e-03 1107.77 1.000000e+00 1.310000e+02 -2.12 70 positions_7nt_m1 2.0 59 214891 775 3.593536e-03 4.812483e-03 1037.88 1.000000e+00 1.310000e+02 -2.12 71 positions_7nt_m1 2.1 50 214941 725 3.361695e-03 4.543867e-03 979.95 1.000000e+00 1.310000e+02 -2.12 72 positions_7nt_m1 2.2 69 215010 656 3.041755e-03 4.269108e-03 920.70 1.000000e+00 1.310000e+02 -2.12 73 positions_7nt_m1 2.3 65 215075 591 2.740361e-03 4.017856e-03 866.51 1.000000e+00 1.310000e+02 -2.12 74 positions_7nt_m1 2.4 47 215122 544 2.522431e-03 3.786646e-03 816.65 1.000000e+00 1.310000e+02 -2.12 75 positions_7nt_m1 2.5 33 215155 511 2.369416e-03 3.551640e-03 765.96 1.000000e+00 1.310000e+02 -2.12 76 positions_7nt_m1 2.6 40 215195 471 2.183943e-03 3.285428e-03 708.55 1.000000e+00 1.310000e+02 -2.12 77 positions_7nt_m1 2.7 26 215221 445 2.063385e-03 3.070156e-03 662.13 1.000000e+00 1.310000e+02 -2.12 78 positions_7nt_m1 2.8 29 215250 416 1.928918e-03 2.872084e-03 619.41 1.000000e+00 1.310000e+02 -2.12 79 positions_7nt_m1 2.9 27 215277 389 1.803723e-03 2.682223e-03 578.46 1.000000e+00 1.310000e+02 -2.12 80 positions_7nt_m1 3.0 23 215300 366 1.697076e-03 2.488830e-03 536.75 1.000000e+00 1.310000e+02 -2.12 81 positions_7nt_m1 3.1 10 215310 356 1.650708e-03 2.322865e-03 500.96 1.000000e+00 1.310000e+02 -2.12 82 positions_7nt_m1 3.2 10 215320 346 1.604340e-03 2.178281e-03 469.78 1.000000e+00 1.310000e+02 -2.12 83 positions_7nt_m1 3.3 15 215335 331 1.534788e-03 2.056981e-03 443.62 1.000000e+00 1.310000e+02 -2.12 84 positions_7nt_m1 3.4 21 215356 310 1.437415e-03 1.944284e-03 419.31 1.000000e+00 1.310000e+02 -2.12 85 positions_7nt_m1 3.5 14 215370 296 1.372499e-03 1.847874e-03 398.52 1.000000e+00 1.310000e+02 -2.12 86 positions_7nt_m1 3.6 17 215387 279 1.293673e-03 1.723249e-03 371.64 9.999998e-01 1.310000e+02 -2.12 87 positions_7nt_m1 3.7 29 215416 250 1.159205e-03 1.628753e-03 351.26 1.000000e+00 1.310000e+02 -2.12 88 positions_7nt_m1 3.8 17 215433 233 1.080379e-03 1.528202e-03 329.58 1.000000e+00 1.310000e+02 -2.12 89 positions_7nt_m1 3.9 31 215464 202 9.366378e-04 1.424357e-03 307.18 1.000000e+00 1.310000e+02 -2.12 90 positions_7nt_m1 4.0 14 215478 188 8.717223e-04 1.313483e-03 283.27 1.000000e+00 1.310000e+02 -2.12 91 positions_7nt_m1 4.1 17 215495 171 7.928964e-04 1.198469e-03 258.47 1.000000e+00 1.310000e+02 -2.12 92 positions_7nt_m1 4.2 13 215508 158 7.326177e-04 1.103104e-03 237.90 1.000000e+00 1.310000e+02 -2.12 93 positions_7nt_m1 4.3 17 215525 141 6.537918e-04 9.971537e-04 215.05 1.000000e+00 1.310000e+02 -2.12 94 positions_7nt_m1 4.4 9 215534 132 6.120604e-04 9.106057e-04 196.39 9.999996e-01 1.309999e+02 -2.12 95 positions_7nt_m1 4.5 11 215545 121 5.610553e-04 8.458852e-04 182.43 9.999995e-01 1.309999e+02 -2.12 96 positions_7nt_m1 4.6 6 215551 115 5.332344e-04 7.738573e-04 166.89 9.999910e-01 1.309988e+02 -2.12 97 positions_7nt_m1 4.7 6 215557 109 5.054135e-04 7.238445e-04 156.11 9.999710e-01 1.309962e+02 -2.12 98 positions_7nt_m1 4.8 10 215567 99 4.590453e-04 6.804999e-04 146.76 9.999881e-01 1.309984e+02 -2.12 99 positions_7nt_m1 4.9 6 215573 93 4.312244e-04 6.315924e-04 136.21 9.999632e-01 1.309952e+02 -2.12 100 positions_7nt_m1 5.0 4 215577 89 4.126771e-04 5.955057e-04 128.43 9.999004e-01 1.309870e+02 -2.12 101 positions_7nt_m1 5.1 6 215583 83 3.848561e-04 5.539974e-04 119.48 9.998212e-01 1.309766e+02 -2.12 102 positions_7nt_m1 5.2 10 215593 73 3.384879e-04 5.212886e-04 112.42 9.999701e-01 1.309961e+02 -2.12 103 positions_7nt_m1 5.3 4 215597 69 3.199406e-04 4.829404e-04 104.15 9.998970e-01 1.309865e+02 -2.12 104 positions_7nt_m1 5.4 10 215607 59 2.735724e-04 4.470831e-04 96.42 9.999834e-01 1.309978e+02 -2.12 105 positions_7nt_m1 5.5 4 215611 55 2.550252e-04 4.174281e-04 90.02 9.999715e-01 1.309963e+02 -2.12 106 positions_7nt_m1 5.6 8 215619 47 2.179306e-04 3.811708e-04 82.21 9.999903e-01 1.309987e+02 -2.12 107 positions_7nt_m1 5.7 6 215625 41 1.901097e-04 3.532563e-04 76.19 9.999961e-01 1.309995e+02 -2.12 108 positions_7nt_m1 5.8 5 215630 36 1.669256e-04 3.224629e-04 69.54 9.999964e-01 1.309995e+02 -2.12 109 positions_7nt_m1 5.9 3 215633 33 1.530151e-04 2.888191e-04 62.29 9.999823e-01 1.309977e+02 -2.12 110 positions_7nt_m1 6.0 2 215635 31 1.437415e-04 2.692016e-04 58.06 9.999621e-01 1.309950e+02 -2.12 111 positions_7nt_m1 6.1 2 215637 29 1.344678e-04 2.427097e-04 52.34 9.998318e-01 1.309780e+02 -2.12 112 positions_7nt_m1 6.2 2 215639 27 1.251942e-04 2.239760e-04 48.30 9.996720e-01 1.309570e+02 -2.12 113 positions_7nt_m1 6.3 1 215640 26 1.205573e-04 2.014468e-04 43.45 9.982779e-01 1.307744e+02 -2.12 114 positions_7nt_m1 6.4 1 215641 25 1.159205e-04 1.877788e-04 40.50 9.963885e-01 1.305269e+02 -2.12 115 positions_7nt_m1 6.5 1 215642 24 1.112837e-04 1.725322e-04 37.21 9.914139e-01 1.298752e+02 -2.11 116 positions_7nt_m1 6.7 1 215643 23 1.066469e-04 1.536684e-04 33.14 9.733651e-01 1.275108e+02 -2.11 117 positions_7nt_m1 6.8 1 215644 22 1.020101e-04 1.469037e-04 31.68 9.706356e-01 1.271533e+02 -2.10 118 positions_7nt_m1 6.9 1 215645 21 9.737324e-05 1.358624e-04 29.30 9.541861e-01 1.249984e+02 -2.10 119 positions_7nt_m1 7.0 1 215646 20 9.273642e-05 1.281011e-04 27.63 9.451489e-01 1.238145e+02 -2.09 120 positions_7nt_m1 7.1 2 215648 18 8.346278e-05 1.168566e-04 25.20 9.439773e-01 1.236610e+02 -2.09 121 positions_7nt_m1 7.3 3 215651 15 6.955231e-05 9.499583e-05 20.49 9.126835e-01 1.195615e+02 -2.08 122 positions_7nt_m1 7.4 2 215653 13 6.027867e-05 8.382134e-05 18.08 9.111478e-01 1.193604e+02 -2.08 123 positions_7nt_m1 8.4 4 215657 9 4.173139e-05 3.094835e-05 6.67 2.295576e-01 3.007204e+01 -1.48 124 positions_7nt_m1 8.6 2 215659 7 3.245775e-05 2.546756e-05 5.49 3.127789e-01 4.097404e+01 -1.61 125 positions_7nt_m1 8.7 1 215660 6 2.782093e-05 2.264900e-05 4.88 3.637985e-01 4.765761e+01 -1.68 126 positions_7nt_m1 9.5 1 215661 5 2.318410e-05 8.410965e-06 1.81 3.742326e-02 4.902447e+00 -0.69 127 positions_7nt_m1 10.3 1 215662 4 1.854728e-05 4.817029e-06 1.04 2.146395e-02 2.811777e+00 -0.45 128 positions_7nt_m1 10.6 2 215664 2 9.273642e-06 3.594809e-06 0.78 1.823486e-01 2.388767e+01 -1.38 129 positions_7nt_m1 11.7 1 215665 1 4.636821e-06 8.158091e-07 0.18 1.613330e-01 2.113462e+01 -1.32 130 positions_7nt_m1 11.9 1 215666 0 0.000000e+00 5.018648e-07 0.11 1.000000e+00 1.310000e+02 -2.12 131 ; Number of sequences scanned 109 ; Sum of sequence lengths 108923 ; N residues 0 ; Matches per matrix ; matrix name matches scored ; 1 positions_7nt_m1 215665 215665 ; TOTAL 215665 215665 ; Host name biow ; Job started 2014-09-05.195252 ; Job done 2014-09-05.195253 ; Seconds 1.11 ; user 1.11 ; system 0.03 ; cuser 0.23 ; csystem 0.03