; matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -return sites -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_sites.tab ; Quick counting mode ; Input files ; input /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/data/sequences/peak-motifs_test_maxlen1000.fasta ; bg /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt ; Matrix files ; matrix 1 /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2.tf ; Sequence format fasta ; Output files ; output /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_sites.tab ; Pseudo counts 1 ; Background model ; Method file ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.26267 ; c 0.23953 ; g 0.23490 ; t 0.26291 ; Thresholds lower upper ; score 7.5 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight gi|49175990|ref|NC_000913.2|:33442-34798 site positions_7nt_m2 R 314 324 GAATATAAGTC 9.9 gi|49175990|ref|NC_000913.2|:1030214-1031803 site positions_7nt_m2 R -174 -164 TAAGATAAGGG 7.7 gi|49175990|ref|NC_000913.2|:1311299-1312519 site positions_7nt_m2 R 326 336 CCATATAAGTA 8.7 gi|49175990|ref|NC_000913.2|:1514602-1515991 site positions_7nt_m2 R 321 331 TGATATAAGTC 10.1 gi|49175990|ref|NC_000913.2|:1867913-1869080 site positions_7nt_m2 R 131 141 TTATATAAGGT 10.6 gi|49175990|ref|NC_000913.2|:2341114-2343212 site positions_7nt_m2 D 237 247 TAATATAAGGT 11.0 gi|49175990|ref|NC_000913.2|:2341114-2343212 site positions_7nt_m2 R 325 335 ATATATAAGCG 9.0 gi|49175990|ref|NC_000913.2|:3661401-3664309 site positions_7nt_m2 R -207 -197 AAATATAAGGG 10.2 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 positions_7nt_m2 11 4 0 -18.100 10.600 28.700 a:0.263 c:0.240 g:0.235 t:0.263 ; Number of sequences scanned 109 ; Sum of sequence lengths 108923 ; N residues 0 ; Matches per matrix ; matrix name matches scored ; 1 positions_7nt_m2 8 0 ; TOTAL 8 0 ; Host name biow ; Job started 2014-09-05.195254 ; Job done 2014-09-05.195254 ; Seconds 0.29 ; user 0.29 ; system 0.04 ; cuser 0.23 ; csystem 0.02