One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/JASPAR/jaspar_core_vertebrates_2013-11.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_core_vertebrates.tab
One-to-n matrix alignment; reference matrix: positions_6nt_m1_shift2 ; 5 matrices ; sort_field=rank_mean
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
positions_6nt_m1_shift2 (positions_6nt_m1) |
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; positions_6nt_m1; m=0 (reference); ncol1=10; shift=2; ncol=14; --rkATCAAAsd--
; Alignment reference
a 0 0 8 0 12 0 0 12 12 12 0 4 0 0
c 0 0 1 0 0 0 12 0 0 0 3 0 0 0
g 0 0 3 4 0 0 0 0 0 0 7 3 0 0
t 0 0 0 8 0 12 0 0 0 0 2 5 0 0
|
MA0523.1_shift0 (TCF7L2) |
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0.864 |
0.617 |
9.193 |
0.634 |
0.917 |
1.388 |
0.931 |
8 |
1 |
1 |
1 |
3 |
11 |
7 |
4.571 |
1 |
; positions_6nt_m1 versus MA0523.1 (TCF7L2); m=1/4; ncol2=14; w=10; offset=-2; strand=D; shift=0; score= 4.5714; rrAswTCAAAGgva
; cor=0.864; Ncor=0.617; logoDP=9.193; NIcor=0.634; NsEucl=0.917; SSD=1.388; NSW=0.931; rcor=8; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=3; rSSD=11; rNSW=7; rank_mean=4.571; match_rank=1
a 1525 1808 3070 85 2795 138 155 4188 4103 4169 303 1035 1398 1782
c 756 840 136 1947 26 0 3304 0 15 0 37 849 1123 826
g 1140 1153 559 2008 0 0 729 0 70 19 3848 2008 1210 757
t 767 387 423 148 1367 4050 0 0 0 0 0 296 457 823
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MA0151.1_shift4 (ARID3A) |
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0.887 |
0.532 |
8.694 |
0.516 |
0.885 |
0.960 |
0.920 |
2 |
4 |
3 |
4 |
11 |
7 |
9 |
5.714 |
2 |
; positions_6nt_m1 versus MA0151.1 (ARID3A); m=2/4; ncol2=6; w=6; offset=2; strand=D; shift=4; score= 5.7143; ----ATyAAA----
; cor=0.887; Ncor=0.532; logoDP=8.694; NIcor=0.516; NsEucl=0.885; SSD=0.960; NSW=0.920; rcor=2; rNcor=4; rlogoDP=3; rNIcor=4; rNsEucl=11; rSSD=7; rNSW=9; rank_mean=5.714; match_rank=2
a 0 0 0 0 27 0 1 27 27 20 0 0 0 0
c 0 0 0 0 0 0 9 0 0 0 0 0 0 0
g 0 0 0 0 0 0 0 0 0 1 0 0 0 0
t 0 0 0 0 0 27 17 0 0 6 0 0 0 0
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MA0037.1_rc_shift2 (GATA3_rc) |
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0.759 |
0.455 |
3.521 |
0.251 |
0.854 |
1.532 |
0.872 |
18 |
10 |
11 |
12 |
17 |
14 |
17 |
14.143 |
16 |
; positions_6nt_m1 versus MA0037.1_rc (GATA3_rc); m=3/4; ncol2=6; w=6; offset=0; strand=R; shift=2; score=14.1429; --cwATCw------
; cor=0.759; Ncor=0.455; logoDP=3.521; NIcor=0.251; NsEucl=0.854; SSD=1.532; NSW=0.872; rcor=18; rNcor=10; rlogoDP=11; rNIcor=12; rNsEucl=17; rSSD=14; rNSW=17; rank_mean=14.143; match_rank=16
a 0 0 8 19 58 1 0 20 0 0 0 0 0 0
c 0 0 37 4 5 1 62 4 0 0 0 0 0 0
g 0 0 3 1 0 0 1 14 0 0 0 0 0 0
t 0 0 15 39 0 61 0 25 0 0 0 0 0 0
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MA0036.1_rc_shift3 (GATA2_rc) |
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0.814 |
0.407 |
0.110 |
-0.082 |
0.851 |
1.115 |
0.889 |
11 |
16 |
18 |
15 |
18 |
10 |
13 |
14.429 |
17 |
; positions_6nt_m1 versus MA0036.1_rc (GATA2_rc); m=4/4; ncol2=5; w=5; offset=1; strand=R; shift=3; score=14.4286; ---yATCc------
; cor=0.814; Ncor=0.407; logoDP=0.110; NIcor=-0.082; NsEucl=0.851; SSD=1.115; NSW=0.889; rcor=11; rNcor=16; rlogoDP=18; rNIcor=15; rNsEucl=18; rSSD=10; rNSW=13; rank_mean=14.429; match_rank=17
a 0 0 0 6 53 0 0 9 0 0 0 0 0 0
c 0 0 0 15 0 1 48 18 0 0 0 0 0 0
g 0 0 0 7 0 0 5 13 0 0 0 0 0 0
t 0 0 0 25 0 52 0 13 0 0 0 0 0 0
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One-to-n matrix alignment; reference matrix: positions_8nt_m3_shift0 ; 3 matrices ; sort_field=rank_mean
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
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positions_8nt_m3_shift0 (positions_8nt_m3) |
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; positions_8nt_m3; m=0 (reference); ncol1=12; shift=0; ncol=13; dsTGGTAATTcw-
; Alignment reference
a 10 6 1 0 0 0 29 28 5 3 7 13 0
c 3 13 0 0 0 0 2 2 2 1 15 8 0
g 10 12 1 34 33 0 2 2 3 4 7 2 0
t 11 3 32 0 1 34 1 2 24 26 5 11 0
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MA0125.1_shift5 (Nobox) |
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0.877 |
0.472 |
3.962 |
0.501 |
0.909 |
0.807 |
0.942 |
6 |
7 |
10 |
5 |
5 |
5 |
4 |
6.000 |
3 |
; positions_8nt_m3 versus MA0125.1 (Nobox); m=1/2; ncol2=8; w=7; offset=5; strand=D; shift=5; score= 6; -----TAATTrsy
; cor=0.877; Ncor=0.472; logoDP=3.962; NIcor=0.501; NsEucl=0.909; SSD=0.807; NSW=0.942; rcor=6; rNcor=7; rlogoDP=10; rNIcor=5; rNsEucl=5; rSSD=5; rNSW=4; rank_mean=6.000; match_rank=3
a 0 0 0 0 0 0 36 38 1 2 15 4 2
c 0 0 0 0 0 1 0 0 1 0 0 12 13
g 0 0 0 0 0 0 0 0 2 4 22 18 6
t 0 0 0 0 0 37 2 0 34 32 1 4 17
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MA0075.1_rc_shift5 (Prrx2_rc) |
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0.983 |
0.410 |
1.577 |
0.069 |
0.935 |
0.211 |
0.979 |
1 |
15 |
14 |
13 |
1 |
1 |
1 |
6.571 |
6 |
; positions_8nt_m3 versus MA0075.1_rc (Prrx2_rc); m=2/2; ncol2=5; w=5; offset=5; strand=R; shift=5; score= 6.5714; -----TAATT---
; cor=0.983; Ncor=0.410; logoDP=1.577; NIcor=0.069; NsEucl=0.935; SSD=0.211; NSW=0.979; rcor=1; rNcor=15; rlogoDP=14; rNIcor=13; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=6.571; match_rank=6
a 0 0 0 0 0 0 59 58 0 1 0 0 0
c 0 0 0 0 0 1 0 1 0 4 0 0 0
g 0 0 0 0 0 0 0 0 0 2 0 0 0
t 0 0 0 0 0 58 0 0 59 52 0 0 0
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One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_shift2 ; 3 matrices ; sort_field=rank_mean
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
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oligos_6nt_mkv3_shift2 (oligos_6nt_mkv3) |
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; oligos_6nt_mkv3; m=0 (reference); ncol1=12; shift=2; ncol=14; --hkGAAGAGATcd
; Alignment reference
a 0 0 3 2 0 12 12 0 12 0 12 0 2 4
c 0 0 4 2 0 0 0 0 0 0 0 0 8 1
g 0 0 2 4 12 0 0 12 0 12 0 1 2 4
t 0 0 3 4 0 0 0 0 0 0 0 11 0 3
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MA0080.1_shift2 (SPI1) |
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0.878 |
0.439 |
5.219 |
0.428 |
0.901 |
0.712 |
0.941 |
4 |
11 |
6 |
7 |
7 |
3 |
5 |
6.143 |
5 |
; oligos_6nt_mkv3 versus MA0080.1 (SPI1); m=1/2; ncol2=6; w=6; offset=0; strand=D; shift=2; score= 6.1429; --sGGAAs------
; cor=0.878; Ncor=0.439; logoDP=5.219; NIcor=0.428; NsEucl=0.901; SSD=0.712; NSW=0.941; rcor=4; rNcor=11; rlogoDP=6; rNIcor=7; rNsEucl=7; rSSD=3; rNSW=5; rank_mean=6.143; match_rank=5
a 0 0 14 4 3 56 56 3 0 0 0 0 0 0
c 0 0 21 2 0 1 0 18 0 0 0 0 0 0
g 0 0 19 48 52 0 0 34 0 0 0 0 0 0
t 0 0 3 3 2 0 1 2 0 0 0 0 0 0
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MA0062.1_shift0 (GABPA) |
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0.809 |
0.462 |
8.128 |
0.420 |
0.884 |
1.722 |
0.892 |
12 |
9 |
4 |
9 |
12 |
17 |
12 |
10.714 |
12 |
; oligos_6nt_mkv3 versus MA0062.1 (GABPA); m=2/2; ncol2=10; w=8; offset=-2; strand=D; shift=0; score=10.7143; ACCGGAAGws----
; cor=0.809; Ncor=0.462; logoDP=8.128; NIcor=0.420; NsEucl=0.884; SSD=1.722; NSW=0.892; rcor=12; rNcor=9; rlogoDP=4; rNIcor=9; rNsEucl=12; rSSD=17; rNSW=12; rank_mean=10.714; match_rank=12
a 5 1 1 0 0 7 7 0 3 0 0 0 0 0
c 1 5 6 0 0 0 0 0 1 2 0 0 0 0
g 1 1 0 7 7 0 0 7 1 4 0 0 0 0
t 0 0 0 0 0 0 0 0 2 1 0 0 0 0
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One-to-n matrix alignment; reference matrix: positions_8nt_m4_shift5 ; 3 matrices ; sort_field=rank_mean
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
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positions_8nt_m4_shift5 (positions_8nt_m4) |
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; positions_8nt_m4; m=0 (reference); ncol1=14; shift=5; ncol=19; -----sgAAGGGGGrGAya
; Alignment reference
a 0 0 0 0 0 4 5 19 20 1 2 2 0 1 15 2 22 6 7
c 0 0 0 0 0 10 5 2 1 0 1 0 0 0 1 0 0 7 6
g 0 0 0 0 0 7 11 4 4 23 22 21 24 21 7 22 1 5 6
t 0 0 0 0 0 4 4 0 0 1 0 2 1 3 2 1 2 7 6
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MA0163.1_shift0 (PLAG1) |
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0.884 |
0.419 |
4.896 |
0.422 |
0.925 |
0.910 |
0.949 |
3 |
14 |
7 |
8 |
2 |
6 |
3 |
6.143 |
4 |
; positions_8nt_m4 versus MA0163.1 (PLAG1); m=1/2; ncol2=14; w=9; offset=-5; strand=D; shift=0; score= 6.1429; GGGGCCcwmGGGGG-----
; cor=0.884; Ncor=0.419; logoDP=4.896; NIcor=0.422; NsEucl=0.925; SSD=0.910; NSW=0.949; rcor=3; rNcor=14; rlogoDP=7; rNIcor=8; rNsEucl=2; rSSD=6; rNSW=3; rank_mean=6.143; match_rank=4
a 0 3 0 0 0 0 4 12 11 2 0 0 0 2 0 0 0 0 0
c 0 0 0 0 14 15 10 0 5 0 0 0 0 0 0 0 0 0 0
g 18 14 18 17 4 1 1 0 2 14 18 18 16 16 0 0 0 0 0
t 0 1 0 1 0 2 3 6 0 2 0 0 2 0 0 0 0 0 0
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MA0057.1_shift6 (MZF1_5-13) |
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0.783 |
0.559 |
4.017 |
0.548 |
0.908 |
1.701 |
0.915 |
16 |
3 |
9 |
3 |
6 |
16 |
10 |
9.000 |
9 |
; positions_8nt_m4 versus MA0057.1 (MZF1_5-13); m=2/2; ncol2=10; w=10; offset=1; strand=D; shift=6; score= 9; ------bkAKGGGkrr---
; cor=0.783; Ncor=0.559; logoDP=4.017; NIcor=0.548; NsEucl=0.908; SSD=1.701; NSW=0.915; rcor=16; rNcor=3; rlogoDP=9; rNIcor=3; rNsEucl=6; rSSD=16; rNSW=10; rank_mean=9.000; match_rank=9
a 0 0 0 0 0 0 1 2 15 0 0 0 0 3 10 8 0 0 0
c 0 0 0 0 0 0 4 0 1 0 0 2 0 1 0 2 0 0 0
g 0 0 0 0 0 0 7 7 0 11 15 14 14 8 4 4 0 0 0
t 0 0 0 0 0 0 4 7 0 5 1 0 2 4 2 2 0 0 0
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One-to-n matrix alignment; reference matrix: positions_7nt_m2_shift1 ; 3 matrices ; sort_field=rank_mean
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
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positions_7nt_m2_shift1 (positions_7nt_m2) |
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; positions_7nt_m2; m=0 (reference); ncol1=11; shift=1; ncol=12; -wwATATAAGkb
; Alignment reference
a 0 2 3 7 0 7 0 7 7 0 0 1
c 0 1 1 0 0 0 0 0 0 0 1 2
g 0 1 1 0 0 0 0 0 0 7 3 2
t 0 3 2 0 7 0 7 0 0 0 3 2
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MA0033.1_shift0 (FOXL1) |
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0.854 |
0.498 |
4.621 |
0.481 |
0.895 |
1.090 |
0.922 |
9 |
5 |
8 |
6 |
9 |
9 |
8 |
7.714 |
7 |
; positions_7nt_m2 versus MA0033.1 (FOXL1); m=1/2; ncol2=8; w=7; offset=-1; strand=D; shift=0; score= 7.7143; wwdayATA----
; cor=0.854; Ncor=0.498; logoDP=4.621; NIcor=0.481; NsEucl=0.895; SSD=1.090; NSW=0.922; rcor=9; rNcor=5; rlogoDP=8; rNIcor=6; rNsEucl=9; rSSD=9; rNSW=8; rank_mean=7.714; match_rank=7
a 7 10 6 13 4 21 0 22 0 0 0 0
c 1 4 3 4 10 0 2 1 0 0 0 0
g 4 2 6 4 2 2 0 0 0 0 0 0
t 11 7 8 2 7 0 21 0 0 0 0 0
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MA0124.1_rc_shift6 (NKX3-1_rc) |
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0.808 |
0.404 |
2.199 |
0.041 |
0.860 |
1.421 |
0.882 |
13 |
17 |
13 |
14 |
14 |
12 |
14 |
13.857 |
15 |
; positions_7nt_m2 versus MA0124.1_rc (NKX3-1_rc); m=2/2; ncol2=7; w=6; offset=5; strand=R; shift=6; score=13.8571; ------TAAGTA
; cor=0.808; Ncor=0.404; logoDP=2.199; NIcor=0.041; NsEucl=0.860; SSD=1.421; NSW=0.882; rcor=13; rNcor=17; rlogoDP=13; rNIcor=14; rNsEucl=14; rSSD=12; rNSW=14; rank_mean=13.857; match_rank=15
a 0 0 0 0 0 0 0 19 19 1 0 19
c 0 0 0 0 0 0 1 0 0 0 0 0
g 0 0 0 0 0 0 0 0 0 19 0 1
t 0 0 0 0 0 0 19 1 1 0 20 0
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One-to-n matrix alignment; reference matrix: positions_8nt_m1_shift0 ; 2 matrices ; sort_field=rank_mean
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
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positions_8nt_m1_shift0 (positions_8nt_m1) |
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; positions_8nt_m1; m=0 (reference); ncol1=13; shift=0; ncol=13; wkCAGGCCGATvc
; Alignment reference
a 17 7 1 37 2 1 4 2 2 34 1 10 9
c 7 9 38 0 0 0 27 31 2 1 0 12 17
g 5 12 0 1 36 38 3 1 35 1 0 12 7
t 10 11 0 1 1 0 5 5 0 3 38 5 6
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MA0035.1_shift7 (Gata1) |
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0.872 |
0.402 |
3.480 |
0.405 |
0.911 |
0.572 |
0.952 |
7 |
18 |
12 |
10 |
4 |
2 |
2 |
7.857 |
8 |
; positions_8nt_m1 versus MA0035.1 (Gata1); m=1/1; ncol2=6; w=6; offset=7; strand=D; shift=7; score= 7.8571; -------sGATgs
; cor=0.872; Ncor=0.402; logoDP=3.480; NIcor=0.405; NsEucl=0.911; SSD=0.572; NSW=0.952; rcor=7; rNcor=18; rlogoDP=12; rNIcor=10; rNsEucl=4; rSSD=2; rNSW=2; rank_mean=7.857; match_rank=8
a 0 0 0 0 0 0 0 13 0 50 1 13 6
c 0 0 0 0 0 0 0 14 0 2 0 6 16
g 0 0 0 0 0 0 0 15 53 0 1 25 22
t 0 0 0 0 0 0 0 11 0 1 51 9 9
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One-to-n matrix alignment; reference matrix: positions_7nt_m1_shift2 ; 2 matrices ; sort_field=rank_mean
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
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positions_7nt_m1_shift2 (positions_7nt_m1) |
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; positions_7nt_m1; m=0 (reference); ncol1=11; shift=2; ncol=13; --vsAGGGGCCgg
; Alignment reference
a 0 0 2 1 6 0 0 0 0 0 0 1 1
c 0 0 2 3 0 0 0 0 0 6 6 1 1
g 0 0 2 2 0 6 6 6 6 0 0 4 4
t 0 0 0 0 0 0 0 0 0 0 0 0 0
|
MA0155.1_shift0 (INSM1) |
|
0.762 |
0.586 |
8.805 |
0.613 |
0.889 |
2.465 |
0.877 |
17 |
2 |
2 |
2 |
10 |
18 |
15 |
9.429 |
10 |
; positions_7nt_m1 versus MA0155.1 (INSM1); m=1/1; ncol2=12; w=10; offset=-2; strand=D; shift=0; score= 9.4286; TGymwGGGGkcr-
; cor=0.762; Ncor=0.586; logoDP=8.805; NIcor=0.613; NsEucl=0.889; SSD=2.465; NSW=0.877; rcor=17; rNcor=2; rlogoDP=2; rNIcor=2; rNsEucl=10; rSSD=18; rNSW=15; rank_mean=9.429; match_rank=10
a 1 0 0 6 16 0 0 0 0 0 3 10 0
c 0 0 8 15 0 0 1 0 0 2 16 0 0
g 4 20 3 0 0 24 23 24 24 16 0 12 0
t 19 4 13 3 8 0 0 0 0 6 5 2 0
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One-to-n matrix alignment; reference matrix: positions_8nt_m5_shift0 ; 2 matrices ; sort_field=rank_mean
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
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positions_8nt_m5_shift0 (positions_8nt_m5) |
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; positions_8nt_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; dtAACCCGGAtg
; Alignment reference
a 13 6 33 39 0 1 1 1 7 36 9 9
c 6 7 2 2 43 42 38 0 0 2 8 8
g 12 8 3 1 0 0 0 41 31 2 10 18
t 12 22 5 1 0 0 4 1 5 3 16 8
|
MA0098.1_rc_shift6 (ETS1_rc) |
|
0.841 |
0.421 |
0.238 |
-0.094 |
0.898 |
0.750 |
0.937 |
10 |
13 |
16 |
16 |
8 |
4 |
6 |
10.429 |
11 |
; positions_8nt_m5 versus MA0098.1_rc (ETS1_rc); m=1/1; ncol2=6; w=6; offset=6; strand=R; shift=6; score=10.4286; ------mGGAwr
; cor=0.841; Ncor=0.421; logoDP=0.238; NIcor=-0.094; NsEucl=0.898; SSD=0.750; NSW=0.937; rcor=10; rNcor=13; rlogoDP=16; rNIcor=16; rNsEucl=8; rSSD=4; rNSW=6; rank_mean=10.429; match_rank=11
a 0 0 0 0 0 0 15 1 0 39 23 16
c 0 0 0 0 0 0 17 0 1 0 0 4
g 0 0 0 0 0 0 3 39 39 1 0 16
t 0 0 0 0 0 0 5 0 0 0 17 4
|
One-to-n matrix alignment; reference matrix: positions_6nt_m2_shift2 ; 4 matrices ; sort_field=rank_mean
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
positions_6nt_m2_shift2 (positions_6nt_m2) |
|
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; positions_6nt_m2; m=0 (reference); ncol1=11; shift=2; ncol=13; --TCCCCTAGCGC
; Alignment reference
a 0 0 0 0 0 0 0 0 1 0 0 0 0
c 0 0 0 1 1 1 1 0 0 0 1 0 1
g 0 0 0 0 0 0 0 0 0 1 0 1 0
t 0 0 1 0 0 0 0 1 0 0 0 0 0
|
MA0056.1_rc_shift2 (MZF1_1-4_rc) |
|
0.878 |
0.479 |
0.037 |
-0.132 |
0.880 |
1.035 |
0.914 |
5 |
6 |
19 |
18 |
13 |
8 |
11 |
11.429 |
13 |
; positions_6nt_m2 versus MA0056.1_rc (MZF1_1-4_rc); m=1/3; ncol2=6; w=6; offset=0; strand=R; shift=2; score=11.4286; --TCCCCr-----
; cor=0.878; Ncor=0.479; logoDP=0.037; NIcor=-0.132; NsEucl=0.880; SSD=1.035; NSW=0.914; rcor=5; rNcor=6; rlogoDP=19; rNIcor=18; rNsEucl=13; rSSD=8; rNSW=11; rank_mean=11.429; match_rank=13
a 0 0 0 0 1 0 1 8 0 0 0 0 0
c 0 0 2 20 19 18 19 4 0 0 0 0 0
g 0 0 0 0 0 0 0 5 0 0 0 0 0
t 0 0 18 0 0 2 0 3 0 0 0 0 0
|
MA0057.1_rc_shift0 (MZF1_5-13_rc) |
|
0.755 |
0.465 |
0.728 |
-0.108 |
0.858 |
2.594 |
0.838 |
19 |
8 |
15 |
17 |
15 |
19 |
19 |
16.000 |
18 |
; positions_6nt_m2 versus MA0057.1_rc (MZF1_5-13_rc); m=2/3; ncol2=10; w=8; offset=-2; strand=R; shift=0; score= 16; yymCCCMTmv---
; cor=0.755; Ncor=0.465; logoDP=0.728; NIcor=-0.108; NsEucl=0.858; SSD=2.594; NSW=0.838; rcor=19; rNcor=8; rlogoDP=15; rNIcor=17; rNsEucl=15; rSSD=19; rNSW=19; rank_mean=16.000; match_rank=18
a 2 2 4 2 0 1 5 0 7 4 0 0 0
c 4 4 8 14 14 15 11 0 7 7 0 0 0
g 2 0 1 0 2 0 0 1 0 4 0 0 0
t 8 10 3 0 0 0 0 15 2 1 0 0 0
|
MA0081.1_rc_shift1 (SPIB_rc) |
|
0.801 |
0.401 |
0.209 |
-0.140 |
0.850 |
1.616 |
0.865 |
14 |
19 |
17 |
19 |
19 |
15 |
18 |
17.286 |
19 |
; positions_6nt_m2 versus MA0081.1_rc (SPIB_rc); m=3/3; ncol2=7; w=6; offset=-1; strand=R; shift=1; score=17.2857; -TTCCksw-----
; cor=0.801; Ncor=0.401; logoDP=0.209; NIcor=-0.140; NsEucl=0.850; SSD=1.616; NSW=0.865; rcor=14; rNcor=19; rlogoDP=17; rNIcor=19; rNsEucl=19; rSSD=15; rNSW=18; rank_mean=17.286; match_rank=19
a 0 2 1 1 0 2 2 18 0 0 0 0 0
c 0 0 0 47 47 7 29 0 0 0 0 0 0
g 0 0 0 0 0 16 14 0 0 0 0 0 0
t 0 47 48 1 2 24 4 31 0 0 0 0 0
|
One-to-n matrix alignment; reference matrix: positions_7nt_m5_shift0 ; 2 matrices ; sort_field=rank_mean
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
positions_7nt_m5_shift0 (positions_7nt_m5) |
|
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; positions_7nt_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; wkCACTCCAsg
; Alignment reference
a 2 1 0 6 0 0 0 0 6 0 1
c 0 0 6 0 6 0 6 6 0 2 1
g 0 2 0 0 0 0 0 0 0 4 3
t 4 3 0 0 0 6 0 0 0 0 1
|
MA0130.1_shift4 (ZNF354C) |
|
0.800 |
0.437 |
6.779 |
0.396 |
0.856 |
1.496 |
0.875 |
15 |
12 |
5 |
11 |
16 |
13 |
16 |
12.571 |
14 |
; positions_7nt_m5 versus MA0130.1 (ZNF354C); m=1/1; ncol2=6; w=6; offset=4; strand=D; shift=4; score=12.5714; ----mTCCAC-
; cor=0.800; Ncor=0.437; logoDP=6.779; NIcor=0.396; NsEucl=0.856; SSD=1.496; NSW=0.875; rcor=15; rNcor=12; rlogoDP=5; rNIcor=11; rNsEucl=16; rSSD=13; rNSW=16; rank_mean=12.571; match_rank=14
a 0 0 0 0 7 3 0 0 16 0 0
c 0 0 0 0 6 2 16 16 0 15 0
g 0 0 0 0 3 0 0 0 0 1 0
t 0 0 0 0 0 11 0 0 0 0 0
|