; pattern-assembly -v 1 -i $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_8nt_mkv5/peak-motifs_oligos-2str-noov_8nt_mkv5.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_8nt_mkv5/peak-motifs_oligos-2str-noov_8nt_mkv5_pssm.asmb ; Input file /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_8nt_mkv5/peak-motifs_oligos-2str-noov_8nt_mkv5.tab ; Output file /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_8nt_mkv5/peak-motifs_oligos-2str-noov_8nt_mkv5_pssm.asmb ; Input score column 8 ; Output score column 0 ; Strand-insensitive assembly ; Max flanking bases 1 ; Max substitutions 1 ; Min matches 0 ; Min weight 0 ; Max assembly size 50 ; Max assembly width 20 ; Top number of patterns 100 ; Number of input patterns 2 ; ; assembly # 1 seed: attcgaac 1 assembled patterns length 8 ; alignt rev_cpl score attcgaac gttcgaat 0.44 attcgaac gttcgaat 0.44 best consensus ; assembly # 2 seed: ggattcga 1 assembled patterns length 8 ; alignt rev_cpl score ggattcga tcgaatcc 0.32 ggattcga tcgaatcc 0.32 best consensus ; Host name biow ; Job started 2014-09-05.194938 ; Job done 2014-09-05.194938 ; Seconds 0.24 ; user 0.24 ; system 0.02 ; cuser 0 ; csystem 0