; pattern-assembly -v 1 -i $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_8nt_mkv5/peak-motifs_oligos-2str-noov_8nt_mkv5.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_8nt_mkv5/peak-motifs_oligos-2str-noov_8nt_mkv5_pssm.asmb
; Input file /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_8nt_mkv5/peak-motifs_oligos-2str-noov_8nt_mkv5.tab
; Output file /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_8nt_mkv5/peak-motifs_oligos-2str-noov_8nt_mkv5_pssm.asmb
; Input score column 8
; Output score column 0
; Strand-insensitive assembly
; Max flanking bases 1
; Max substitutions 1
; Min matches 0
; Min weight 0
; Max assembly size 50
; Max assembly width 20
; Top number of patterns 100
; Number of input patterns 2
;
; assembly # 1 seed: attcgaac 1 assembled patterns length 8
; alignt rev_cpl score
attcgaac gttcgaat 0.44
attcgaac gttcgaat 0.44 best consensus
; assembly # 2 seed: ggattcga 1 assembled patterns length 8
; alignt rev_cpl score
ggattcga tcgaatcc 0.32
ggattcga tcgaatcc 0.32 best consensus
; Host name biow
; Job started 2014-09-05.194938
; Job done 2014-09-05.194938
; Seconds 0.24
; user 0.24
; system 0.02
; cuser 0
; csystem 0