; matrix-scan -v 1 -quick -seq_format fasta -i $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2.tf -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score -5 -bginput -markov 1 -return distrib -return occ_proba -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_scan_mkv1_enrichment.tab ; Quick counting mode ; Input files ; input /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/data/sequences/peak-motifs_test_maxlen1000.fasta ; Matrix files ; matrix 1 /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2.tf ; Sequence format fasta ; Output files ; output /vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_scan_mkv1_enrichment.tab ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.26223 ; c 0.24007 ; g 0.23539 ; t 0.26231 ; Thresholds lower upper ; score -5 NA ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 dyads_m2 13 4 1 -30.300 12.300 42.600 a:0.262 c:0.240 g:0.235 t:0.262 ; ; Score distribution #matrix score occ occ_cum inv_cum inv_cum_freq occ_prior exp_occ occ_Pval occ_Eval occ_sig occ_sig_rank dyads_m2 -5.0 553 198048 17182 7.983125e-02 8.072059e-02 17373.41 9.357471e-01 1.347476e+02 -2.13 1 dyads_m2 -4.9 520 198568 16662 7.741522e-02 7.785579e-02 16756.82 7.782736e-01 1.120714e+02 -2.05 2 dyads_m2 -4.8 514 199082 16148 7.502706e-02 7.556750e-02 16264.32 8.296016e-01 1.194626e+02 -2.08 3 dyads_m2 -4.7 480 199562 15668 7.279688e-02 7.287278e-02 15684.33 5.550574e-01 7.992826e+01 -1.90 4 dyads_m2 -4.6 499 200061 15169 7.047842e-02 7.049116e-02 15171.74 5.104073e-01 7.349865e+01 -1.87 5 dyads_m2 -4.5 473 200534 14696 6.828076e-02 6.841380e-02 14724.63 5.977800e-01 8.608032e+01 -1.93 6 dyads_m2 -4.4 404 200938 14292 6.640369e-02 6.594137e-02 14192.49 1.948334e-01 2.805601e+01 -1.45 7 dyads_m2 -4.3 469 201407 13823 6.422462e-02 6.396443e-02 13767.00 3.121100e-01 4.494383e+01 -1.65 8 dyads_m2 -4.2 446 201853 13377 6.215241e-02 6.182377e-02 13306.27 2.645537e-01 3.809573e+01 -1.58 9 dyads_m2 -4.1 444 202297 12933 6.008949e-02 5.952959e-02 12812.49 1.372026e-01 1.975718e+01 -1.30 10 dyads_m2 -4.0 412 202709 12521 5.817525e-02 5.767830e-02 12414.04 1.624783e-01 2.339687e+01 -1.37 11 dyads_m2 -3.9 416 203125 12105 5.624242e-02 5.547319e-02 11939.44 6.028578e-02 8.681152e+00 -0.94 12 dyads_m2 -3.8 387 203512 11718 5.444434e-02 5.350922e-02 11516.74 2.748504e-02 3.957846e+00 -0.60 13 dyads_m2 -3.7 402 203914 11316 5.257656e-02 5.158541e-02 11102.68 1.926227e-02 2.773767e+00 -0.44 14 dyads_m2 -3.6 389 204303 10927 5.076918e-02 4.988275e-02 10736.21 3.003427e-02 4.324935e+00 -0.64 15 dyads_m2 -3.5 417 204720 10510 4.883171e-02 4.803727e-02 10339.01 4.312530e-02 6.210044e+00 -0.79 16 dyads_m2 -3.4 391 205111 10119 4.701504e-02 4.604769e-02 9910.80 1.656049e-02 2.384711e+00 -0.38 17 dyads_m2 -3.3 364 205475 9755 4.532382e-02 4.428145e-02 9530.65 9.684105e-03 1.394511e+00 -0.14 18 dyads_m2 -3.2 303 205778 9452 4.391602e-02 4.272866e-02 9196.45 3.383642e-03 4.872445e-01 0.31 19 dyads_m2 -3.1 326 206104 9126 4.240135e-02 4.104330e-02 8833.71 8.011852e-04 1.153707e-01 0.94 20 dyads_m2 -3.0 331 206435 8795 4.086345e-02 3.941282e-02 8482.78 2.963418e-04 4.267321e-02 1.37 21 dyads_m2 -2.9 326 206761 8469 3.934879e-02 3.767184e-02 8108.07 2.522242e-05 3.632028e-03 2.44 22 dyads_m2 -2.8 361 207122 8108 3.767150e-02 3.614280e-02 7778.98 8.145832e-05 1.173000e-02 1.93 23 dyads_m2 -2.7 313 207435 7795 3.621724e-02 3.466790e-02 7461.54 4.861268e-05 7.000226e-03 2.15 24 dyads_m2 -2.6 303 207738 7492 3.480944e-02 3.339083e-02 7186.67 1.391829e-04 2.004234e-02 1.70 25 dyads_m2 -2.5 266 208004 7226 3.357354e-02 3.202685e-02 6893.11 2.671165e-05 3.846478e-03 2.41 26 dyads_m2 -2.4 287 208291 6939 3.224008e-02 3.059119e-02 6584.11 5.409911e-06 7.790272e-04 3.11 27 dyads_m2 -2.3 271 208562 6668 3.098096e-02 2.934523e-02 6315.94 4.244445e-06 6.112000e-04 3.21 28 dyads_m2 -2.2 237 208799 6431 2.987980e-02 2.827284e-02 6085.13 4.233406e-06 6.096105e-04 3.21 29 dyads_m2 -2.1 254 209053 6177 2.869966e-02 2.713030e-02 5839.23 4.581989e-06 6.598064e-04 3.18 30 dyads_m2 -2.0 236 209289 5941 2.760316e-02 2.603685e-02 5603.88 3.163460e-06 4.555383e-04 3.34 31 dyads_m2 -1.9 218 209507 5723 2.659028e-02 2.498806e-02 5378.16 1.243309e-06 1.790365e-04 3.75 32 dyads_m2 -1.8 216 209723 5507 2.558670e-02 2.389170e-02 5142.19 1.819696e-07 2.620362e-05 4.58 33 dyads_m2 -1.7 195 209918 5312 2.468069e-02 2.293416e-02 4936.10 4.570978e-08 6.582208e-06 5.18 34 dyads_m2 -1.6 197 210115 5115 2.376538e-02 2.210483e-02 4757.60 1.153341e-07 1.660811e-05 4.78 35 dyads_m2 -1.5 209 210324 4906 2.279433e-02 2.112476e-02 4546.66 5.357138e-08 7.714279e-06 5.11 36 dyads_m2 -1.4 168 210492 4738 2.201376e-02 2.034517e-02 4378.87 3.201356e-08 4.609953e-06 5.34 37 dyads_m2 -1.3 192 210684 4546 2.112169e-02 1.942214e-02 4180.21 9.040275e-09 1.301800e-06 5.89 38 dyads_m2 -1.2 164 210848 4382 2.035971e-02 1.869688e-02 4024.11 1.010703e-08 1.455412e-06 5.84 39 dyads_m2 -1.1 137 210985 4245 1.972318e-02 1.790843e-02 3854.41 2.159513e-10 3.109699e-08 7.51 40 dyads_m2 -1.0 178 211163 4067 1.889615e-02 1.706381e-02 3672.63 5.671646e-11 8.167170e-09 8.09 41 dyads_m2 -0.9 138 211301 3929 1.825497e-02 1.639462e-02 3528.60 1.276919e-11 1.838764e-09 8.74 42 dyads_m2 -0.8 166 211467 3763 1.748370e-02 1.566523e-02 3371.61 1.325095e-11 1.908137e-09 8.72 43 dyads_m2 -0.7 161 211628 3602 1.673566e-02 1.488118e-02 3202.86 1.680423e-12 2.419809e-10 9.62 44 dyads_m2 -0.6 141 211769 3461 1.608055e-02 1.418761e-02 3053.59 1.858261e-13 2.675896e-11 10.57 45 dyads_m2 -0.5 139 211908 3322 1.543472e-02 1.351200e-02 2908.17 2.186186e-14 3.148108e-12 11.50 46 dyads_m2 -0.4 162 212070 3160 1.468204e-02 1.285313e-02 2766.37 9.201113e-14 1.324960e-11 10.88 47 dyads_m2 -0.3 147 212217 3013 1.399904e-02 1.228164e-02 2643.36 7.731145e-13 1.113285e-10 9.95 48 dyads_m2 -0.2 132 212349 2881 1.338574e-02 1.166302e-02 2510.22 1.839445e-13 2.648801e-11 10.58 49 dyads_m2 -0.1 133 212482 2748 1.276780e-02 1.106690e-02 2381.92 9.440520e-14 1.359435e-11 10.87 50 dyads_m2 0.0 104 212586 2644 1.228459e-02 1.043793e-02 2246.54 1.267701e-16 1.825490e-14 13.74 51 dyads_m2 0.1 118 212704 2526 1.173634e-02 9.947963e-03 2141.09 2.287754e-16 3.294366e-14 13.48 52 dyads_m2 0.2 117 212821 2409 1.119273e-02 9.377711e-03 2018.36 1.220742e-17 1.757868e-15 14.76 53 dyads_m2 0.3 116 212937 2293 1.065377e-02 8.891654e-03 1913.74 1.623044e-17 2.337184e-15 14.63 54 dyads_m2 0.4 90 213027 2203 1.023561e-02 8.430761e-03 1814.54 4.277210e-19 6.159183e-17 16.21 55 dyads_m2 0.5 88 213115 2115 9.826743e-03 8.036297e-03 1729.64 1.334663e-19 1.921915e-17 16.72 56 dyads_m2 0.6 91 213206 2024 9.403937e-03 7.627439e-03 1641.65 3.363160e-20 4.842950e-18 17.31 57 dyads_m2 0.7 68 213274 1956 9.087995e-03 7.240803e-03 1558.43 1.326047e-22 1.909507e-20 19.72 58 dyads_m2 0.8 85 213359 1871 8.693066e-03 6.881153e-03 1481.02 8.358269e-23 1.203591e-20 19.92 59 dyads_m2 0.9 77 213436 1794 8.335308e-03 6.510731e-03 1401.30 3.457610e-24 4.978958e-22 21.30 60 dyads_m2 1.0 76 213512 1718 7.982196e-03 6.195830e-03 1333.52 2.728157e-24 3.928546e-22 21.41 61 dyads_m2 1.1 58 213570 1660 7.712715e-03 5.928545e-03 1275.99 3.744563e-25 5.392171e-23 22.27 62 dyads_m2 1.2 72 213642 1588 7.378188e-03 5.618441e-03 1209.25 1.114683e-25 1.605143e-23 22.79 63 dyads_m2 1.3 81 213723 1507 7.001845e-03 5.352935e-03 1152.11 7.734045e-24 1.113702e-21 20.95 64 dyads_m2 1.4 59 213782 1448 6.727718e-03 5.123958e-03 1102.82 1.520138e-23 2.188999e-21 20.66 65 dyads_m2 1.5 57 213839 1391 6.462884e-03 4.854988e-03 1044.93 9.698160e-25 1.396535e-22 21.85 66 dyads_m2 1.6 66 213905 1325 6.156234e-03 4.643615e-03 999.44 4.654288e-23 6.702175e-21 20.17 67 dyads_m2 1.7 49 213954 1276 5.928569e-03 4.395467e-03 946.03 1.033491e-24 1.488228e-22 21.83 68 dyads_m2 1.8 62 214016 1214 5.640504e-03 4.196309e-03 903.17 3.999951e-23 5.759930e-21 20.24 69 dyads_m2 1.9 50 214066 1164 5.408193e-03 3.982758e-03 857.21 1.342557e-23 1.933282e-21 20.71 70 dyads_m2 2.0 50 214116 1114 5.175882e-03 3.753835e-03 807.93 1.119096e-24 1.611498e-22 21.79 71 dyads_m2 2.1 43 214159 1071 4.976095e-03 3.549270e-03 763.91 5.364241e-26 7.724507e-24 23.11 72 dyads_m2 2.2 50 214209 1021 4.743785e-03 3.349986e-03 721.01 3.637855e-26 5.238511e-24 23.28 73 dyads_m2 2.3 44 214253 977 4.539351e-03 3.156359e-03 679.34 4.198031e-27 6.045165e-25 24.22 74 dyads_m2 2.4 47 214300 930 4.320979e-03 2.984846e-03 642.43 1.040004e-26 1.497606e-24 23.82 75 dyads_m2 2.5 46 214346 884 4.107253e-03 2.801321e-03 602.93 5.013592e-27 7.219572e-25 24.14 76 dyads_m2 2.6 38 214384 846 3.930697e-03 2.608474e-03 561.42 2.875648e-29 4.140933e-27 26.38 77 dyads_m2 2.7 51 214435 795 3.693740e-03 2.438773e-03 524.89 3.259507e-28 4.693690e-26 25.33 78 dyads_m2 2.8 55 214490 740 3.438198e-03 2.293331e-03 493.59 2.838714e-25 4.087748e-23 22.39 79 dyads_m2 2.9 50 214540 690 3.205888e-03 2.140429e-03 460.68 1.365713e-23 1.966627e-21 20.71 80 dyads_m2 3.0 44 214584 646 3.001454e-03 1.993874e-03 429.14 1.116610e-22 1.607918e-20 19.79 81 dyads_m2 3.1 36 214620 610 2.834191e-03 1.845147e-03 397.13 2.298957e-23 3.310497e-21 20.48 82 dyads_m2 3.2 34 214654 576 2.676219e-03 1.717021e-03 369.55 1.805100e-23 2.599343e-21 20.59 83 dyads_m2 3.3 25 214679 551 2.560064e-03 1.599758e-03 344.31 7.237075e-25 1.042139e-22 21.98 84 dyads_m2 3.4 42 214721 509 2.364923e-03 1.501592e-03 323.19 8.632880e-22 1.243135e-19 18.91 85 dyads_m2 3.5 23 214744 486 2.258060e-03 1.403146e-03 302.00 1.345727e-22 1.937847e-20 19.71 86 dyads_m2 3.6 22 214766 464 2.155843e-03 1.302985e-03 280.44 7.676898e-24 1.105473e-21 20.96 87 dyads_m2 3.7 28 214794 436 2.025749e-03 1.220179e-03 262.62 9.028848e-23 1.300154e-20 19.89 88 dyads_m2 3.8 23 214817 413 1.918886e-03 1.152119e-03 247.97 6.771575e-22 9.751069e-20 19.01 89 dyads_m2 3.9 22 214839 391 1.816670e-03 1.084173e-03 233.35 3.056241e-21 4.400988e-19 18.36 90 dyads_m2 4.0 25 214864 366 1.700514e-03 1.021374e-03 219.83 1.386975e-19 1.997243e-17 16.70 91 dyads_m2 4.1 20 214884 346 1.607590e-03 9.597860e-04 206.57 5.617731e-19 8.089532e-17 16.09 92 dyads_m2 4.2 17 214901 329 1.528604e-03 9.124495e-04 196.39 3.833736e-18 5.520580e-16 15.26 93 dyads_m2 4.3 18 214919 311 1.444973e-03 8.585831e-04 184.79 1.684617e-17 2.425848e-15 14.62 94 dyads_m2 4.4 12 214931 299 1.389218e-03 8.146420e-04 175.33 1.330492e-17 1.915908e-15 14.72 95 dyads_m2 4.5 11 214942 288 1.338110e-03 7.770616e-04 167.25 1.560552e-17 2.247195e-15 14.65 96 dyads_m2 4.6 13 214955 275 1.277709e-03 7.320428e-04 157.56 1.642621e-17 2.365375e-15 14.63 97 dyads_m2 4.7 10 214965 265 1.231247e-03 6.968021e-04 149.97 1.486029e-17 2.139882e-15 14.67 98 dyads_m2 4.8 13 214978 252 1.170846e-03 6.574596e-04 141.50 3.712103e-17 5.345429e-15 14.27 99 dyads_m2 4.9 9 214987 243 1.129030e-03 6.141722e-04 132.19 4.020725e-18 5.789844e-16 15.24 100 dyads_m2 5.0 12 214999 231 1.073275e-03 5.798265e-04 124.80 1.235882e-17 1.779670e-15 14.75 101 dyads_m2 5.1 8 215007 223 1.036106e-03 5.382690e-04 115.85 6.934361e-19 9.985479e-17 16.00 102 dyads_m2 5.2 17 215024 206 9.571201e-04 5.046993e-04 108.63 6.159180e-17 8.869219e-15 14.05 103 dyads_m2 5.3 16 215040 190 8.827807e-04 4.647567e-04 100.03 8.078930e-16 1.163366e-13 12.93 104 dyads_m2 5.4 13 215053 177 8.223799e-04 4.291290e-04 92.36 3.491290e-15 5.027457e-13 12.30 105 dyads_m2 5.5 10 215063 167 7.759177e-04 3.979108e-04 85.64 4.874545e-15 7.019344e-13 12.15 106 dyads_m2 5.6 9 215072 158 7.341018e-04 3.611977e-04 77.74 9.431423e-16 1.358125e-13 12.87 107 dyads_m2 5.7 9 215081 149 6.922859e-04 3.317977e-04 71.41 7.760343e-16 1.117489e-13 12.95 108 dyads_m2 5.8 10 215091 139 6.458238e-04 3.011054e-04 64.81 8.894973e-16 1.280876e-13 12.89 109 dyads_m2 5.9 16 215107 123 5.714843e-04 2.697810e-04 58.06 8.453605e-14 1.217319e-11 10.91 110 dyads_m2 6.0 12 215119 111 5.157298e-04 2.470750e-04 53.18 3.078013e-12 4.432338e-10 9.35 111 dyads_m2 6.1 9 215128 102 4.739138e-04 2.202740e-04 47.41 4.241517e-12 6.107785e-10 9.21 112 dyads_m2 6.2 6 215134 96 4.460365e-04 2.005106e-04 43.16 2.986214e-12 4.300148e-10 9.37 113 dyads_m2 6.3 8 215142 88 4.088668e-04 1.791231e-04 38.55 6.347142e-12 9.139884e-10 9.04 114 dyads_m2 6.4 7 215149 81 3.763433e-04 1.617768e-04 34.82 1.727588e-11 2.487727e-09 8.60 115 dyads_m2 6.5 2 215151 79 3.670509e-04 1.481789e-04 31.89 1.604557e-12 2.310562e-10 9.64 116 dyads_m2 6.6 8 215159 71 3.298812e-04 1.340720e-04 28.86 2.712216e-11 3.905590e-09 8.41 117 dyads_m2 6.7 4 215163 67 3.112963e-04 1.238295e-04 26.65 3.970703e-11 5.717812e-09 8.24 118 dyads_m2 6.8 4 215167 63 2.927115e-04 1.140379e-04 24.54 6.551040e-11 9.433497e-09 8.03 119 dyads_m2 7.0 4 215171 59 2.741266e-04 9.921455e-05 21.35 1.624676e-11 2.339533e-09 8.63 120 dyads_m2 7.1 1 215172 58 2.694804e-04 9.269067e-05 19.95 3.444169e-12 4.959603e-10 9.30 121 dyads_m2 7.2 2 215174 56 2.601880e-04 8.833570e-05 19.01 4.901150e-12 7.057656e-10 9.15 122 dyads_m2 7.3 2 215176 54 2.508956e-04 8.331187e-05 17.93 5.157329e-12 7.426554e-10 9.13 123 dyads_m2 7.5 2 215178 52 2.416031e-04 7.604813e-05 16.37 1.861983e-12 2.681255e-10 9.57 124 dyads_m2 7.8 2 215180 50 2.323107e-04 6.387832e-05 13.75 3.915431e-14 5.638220e-12 11.25 125 dyads_m2 8.1 2 215182 48 2.230183e-04 5.197788e-05 11.19 3.137466e-16 4.517950e-14 13.35 126 dyads_m2 8.2 3 215185 45 2.090796e-04 4.745195e-05 10.21 1.013434e-15 1.459345e-13 12.84 127 dyads_m2 8.3 10 215195 35 1.626175e-04 4.251593e-05 9.15 6.136586e-11 8.836683e-09 8.05 128 dyads_m2 8.4 4 215199 31 1.440326e-04 3.800399e-05 8.18 8.984188e-10 1.293723e-07 6.89 129 dyads_m2 8.5 2 215201 29 1.347402e-04 3.397563e-05 7.31 1.135355e-09 1.634911e-07 6.79 130 dyads_m2 8.6 2 215203 27 1.254478e-04 3.011846e-05 6.48 1.503907e-09 2.165626e-07 6.66 131 dyads_m2 8.7 2 215205 25 1.161554e-04 2.626509e-05 5.65 1.845863e-09 2.658043e-07 6.58 132 dyads_m2 8.8 5 215210 20 9.292428e-05 2.291265e-05 4.93 2.792297e-07 4.020908e-05 4.40 133 dyads_m2 8.9 3 215213 17 7.898564e-05 1.905773e-05 4.10 1.578938e-06 2.273671e-04 3.64 134 dyads_m2 9.0 1 215214 16 7.433942e-05 1.612408e-05 3.47 8.236568e-07 1.186066e-04 3.93 135 dyads_m2 9.1 6 215220 10 4.646214e-05 1.359916e-05 2.93 9.189746e-04 1.323323e-01 0.88 136 dyads_m2 9.2 2 215222 8 3.716971e-05 1.141025e-05 2.46 3.824404e-03 5.507142e-01 0.26 137 dyads_m2 9.3 1 215223 7 3.252350e-05 9.405486e-06 2.02 4.833491e-03 6.960227e-01 0.16 138 dyads_m2 9.4 2 215225 5 2.323107e-05 8.162256e-06 1.76 3.336166e-02 4.804079e+00 -0.68 139 dyads_m2 9.5 1 215226 4 1.858486e-05 6.750906e-06 1.45 5.988105e-02 8.622871e+00 -0.94 140 dyads_m2 9.7 1 215227 3 1.393864e-05 5.145886e-06 1.11 1.011072e-01 1.455943e+01 -1.16 141 dyads_m2 10.1 1 215228 2 9.292428e-06 3.870508e-06 0.83 2.031323e-01 2.925104e+01 -1.47 142 dyads_m2 11.6 1 215229 1 4.646214e-06 1.064575e-06 0.23 2.047729e-01 2.948729e+01 -1.47 143 dyads_m2 11.7 1 215230 0 0.000000e+00 8.393307e-07 0.18 1.000000e+00 1.440000e+02 -2.16 144 ; Number of sequences scanned 109 ; Sum of sequence lengths 108923 ; N residues 0 ; Matches per matrix ; matrix name matches scored ; 1 dyads_m2 215229 215229 ; TOTAL 215229 215229 ; Host name biow ; Job started 2014-09-05.205404 ; Job done 2014-09-05.205406 ; Seconds 1.41 ; user 1.41 ; system 0.02 ; cuser 0.24 ; csystem 0.02