/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_footprintDB.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_footprintDB
 Program version       	1.118
 Input files
	file2 	$RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf
	file1 	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_footprintDB_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_footprintDB.tab
	html_index   	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_footprintDB_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_footprintDB_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_footprintDB.html
	prefix       	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_footprintDB
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3.tf
		file1	1	11	52	bwtCCTGACnk
	file2	4196 matrices	$RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf
		file2		1		17		100		yyaymCATCAAwmwwmm
		file2		2		10		7		ACCGGAAGws
		file2		3		16		100		wwtksgTAATTACsdy
		file2		4		17		100		twrttaATTAwtaawwr
		file2		5		18		100		TCCGynnnnnnnnnCGGA
		file2		6		20		100		gwrastTTCCGGAAyrywrr
		file2		7		20		100		yrawygGyGCCGyrysackh
		file2		8		21		100		wmrmraAtmGAAGaaawawww
		file2		9		20		100		rkmkkakCACGTGmyyrvwy
		file2		10		6		1		CTATCA
		file2		11		18		66		hTTwCCwWAwwdGGhAat
		...	4186 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	logoDP       	Dot product between the logo matrices.
	8	NIcor        	Normalized Pearson correlation between the information content matrices. NIcor = Icor * Wr
	9	NSW          	Normalized Sandelin-Wasserman similarity. NSW = SW/w
	10	SSD          	sum of squared distance.
	11	NsEucl       	relative Euclidian similarity. NsEucl = (max(dEucl) - dEucl)/max(dEucl)
	12	w1           	Width of the first matrix
	13	w2           	Width of the second matrix
	14	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	15	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	16	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	17	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	18	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	19	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	20	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
	21	consensus1   	IUPAC consensus of matrix 1 (dots represent non-aligned columns)
	22	consensus2   	IUPAC consensus of matrix 2 (dots represent non-aligned columns)
	23	rcor         	Matching rank for cor
	24	rNcor        	Matching rank for Ncor
	25	rlogoDP      	Matching rank for logoDP
	26	rNIcor       	Matching rank for NIcor
	27	rNsEucl      	Matching rank for NsEucl
	28	rSSD         	Matching rank for SSD
	29	rNSW         	Matching rank for NSW
	30	rank_mean    	Mean of the matching ranks on all selected metrics
	31	match_rank   	Rank of the match (sorting by rank_mean)
id1 id2 name1 name2 cor Ncor logoDP NIcor NSW SSD NsEucl w1 w2 w W Wr wr1 wr2 strand offset consensus1 consensus2 rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank
dyads_m3 1785_MA0227.1_JASPAR_CORE_2009_ dyads_m3 1785_MA0227.1_JASPAR_CORE_2009_ 0.902 0.492 7.693 0.494 0.942 0.7005 0.90136 11 6 6 11 0.5455 0.5455 1.0000 D 5 .....TGACnk TGACAk 7 12 6 3 10 9 9 8.0000 1
dyads_m3 1810_MA0252.1_JASPAR_CORE_2009_ dyads_m3 1810_MA0252.1_JASPAR_CORE_2009_ 0.881 0.480 7.688 0.471 0.928 0.8611 0.89064 11 6 6 11 0.5455 0.5455 1.0000 D 5 .....TGACnk TGACAs 9 14 7 9 14 12 12 11.0000 2
dyads_m3 7677_TGIF1_si_HOCOMOCO_v9_ dyads_m3 7677_TGIF1_si_HOCOMOCO_v9_ 0.874 0.477 7.265 0.464 0.926 0.8888 0.88890 11 6 6 11 0.5455 0.5455 1.0000 D 5 .....TGACnk TGACAg 11 15 11 10 15 13 13 12.5714 3
dyads_m3 6403_2c9l_Z_3D-footprint_20130124_ dyads_m3 6403_2c9l_Z_3D-footprint_20130124_ 0.934 0.424 5.939 0.413 0.961 0.3867 0.91205 11 5 5 11 0.4545 0.4545 1.0000 D 5 .....TGACn. TgACt 1 40 22 21 3 1 1 12.7143 4
dyads_m3 2703_PF0016.1_JASPAR_CORE_2009_ dyads_m3 2703_PF0016.1_JASPAR_CORE_2009_ 0.861 0.502 7.816 0.483 0.911 1.2472 0.88719 11 8 7 12 0.5833 0.6364 0.8750 D -1 bwtCCTG.... .yTTCCTG 15 6 3 7 16 25 18 12.8571 5
dyads_m3 6291_1r0n_A_3D-footprint_20130124_ dyads_m3 6291_1r0n_A_3D-footprint_20130124_ 0.930 0.423 5.339 0.414 0.959 0.4062 0.90986 11 5 5 11 0.4545 0.4545 1.0000 D 5 .....TGACn. TGaCc 2 41 26 20 4 2 2 13.8571 6
dyads_m3 6477_2nny_A_3D-footprint_20130124_ dyads_m3 6477_2nny_A_3D-footprint_20130124_ 0.867 0.473 4.762 0.450 0.935 0.7760 0.89619 11 6 6 11 0.5455 0.5455 1.0000 D 0 bwtCCT..... cTTCCT 13 16 28 15 11 10 10 14.7143 7
dyads_m3 1766_MA0207.1_JASPAR_CORE_2009_ dyads_m3 1766_MA0207.1_JASPAR_CORE_2009_ 0.862 0.470 7.371 0.456 0.915 1.0211 0.88091 11 6 6 11 0.5455 0.5455 1.0000 D 5 .....TGACnk TGACAG 14 17 9 13 21 15 15 14.8571 8
dyads_m3 5102_SigH_1_DBTBS_1.0_ dyads_m3 5102_SigH_1_DBTBS_1.0_ 0.907 0.453 0.959 0.037 0.958 0.5005 0.91662 11 7 6 12 0.5000 0.5455 0.8571 R -1 bwtCCT..... .WHTCCT 5 24 45 38 1 5 4 17.4286 9
dyads_m3 7306_ATF3_f1_HOCOMOCO_v9_ dyads_m3 7306_ATF3_f1_HOCOMOCO_v9_ 0.895 0.413 5.654 0.423 0.949 0.6119 0.90781 11 8 6 13 0.4615 0.5455 0.7500 D 5 .....TGACnk TGAyky.. 8 49 25 19 7 8 7 17.5714 10
dyads_m3 6695_3ri4_A_3D-footprint_20130124_ dyads_m3 6695_3ri4_A_3D-footprint_20130124_ 0.923 0.503 0.136 -0.154 0.958 0.5069 0.91609 11 6 6 11 0.5455 0.5455 1.0000 R 0 bwtCCT..... CATCCT 3 5 53 57 2 6 5 18.7143 11
dyads_m3 5025_HVH21_Athamap_20091028_ dyads_m3 5025_HVH21_Athamap_20091028_ 0.787 0.606 6.270 0.609 0.912 1.7567 0.90628 11 12 10 13 0.7692 0.9091 0.8333 D 1 .wtCCTGACnk bmysTGACrg.. 39 2 16 2 9 49 17 19.1429 12
dyads_m3 5520_MEIS1_DBD_HumanTF_1.0_ dyads_m3 5520_MEIS1_DBD_HumanTF_1.0_ 0.805 0.512 5.969 0.493 0.903 1.3627 0.88208 11 7 7 11 0.6364 0.6364 1.0000 D 4 ....CTGACnk wTGACAg 31 3 20 5 19 33 24 19.2857 13
dyads_m3 6562_3dzu_A_3D-footprint_20130124_ dyads_m3 6562_3dzu_A_3D-footprint_20130124_ 0.906 0.412 4.328 0.399 0.946 0.5404 0.89604 11 5 5 11 0.4545 0.4545 1.0000 D 5 .....TGACn. TGACC 6 51 29 24 12 7 8 19.5714 14
dyads_m3 2661_MF0002.1_JASPAR_CORE_2009_ dyads_m3 2661_MF0002.1_JASPAR_CORE_2009_ 0.844 0.460 6.980 0.440 0.902 1.1805 0.87196 11 6 6 11 0.5455 0.5455 1.0000 D 5 .....TGACnk TGACGT 16 20 12 16 33 21 27 20.7143 15
dyads_m3 6038_1dh3_AC_3D-footprint_20130124_ dyads_m3 6038_1dh3_AC_3D-footprint_20130124_ 0.870 0.401 6.725 0.387 0.929 0.8494 0.89139 11 8 6 13 0.4615 0.5455 0.7500 D 5 .....TGACnk TGACGn.. 12 58 15 29 13 11 11 21.2857 16
dyads_m3 328_RAV1_2__Athamap_20091028_ dyads_m3 328_RAV1_2__Athamap_20091028_ 0.757 0.694 6.923 0.676 0.907 2.0393 0.90820 11 12 11 12 0.9167 1.0000 0.9167 D -1 bwtCCTGACnk .tCaCCTGrssy 55 1 13 1 6 58 20 22.0000 17
dyads_m3 5557_Meis2_DBD_1_HumanTF_1.0_ dyads_m3 5557_Meis2_DBD_1_HumanTF_1.0_ 0.787 0.501 6.750 0.483 0.891 1.5314 0.87499 11 7 7 11 0.6364 0.6364 1.0000 D 4 ....CTGACnk wTGACAg 40 7 14 6 26 38 35 23.7143 18
dyads_m3 6590_3g97_A_3D-footprint_20130124_ dyads_m3 6590_3g97_A_3D-footprint_20130124_ 0.881 0.400 0.210 0.032 0.959 0.4065 0.90984 11 5 5 11 0.4545 0.4545 1.0000 R 0 bwtCC...... GNACC 10 59 50 39 5 3 3 24.1429 19
dyads_m3 6353_1yo5_C_3D-footprint_20130124_ dyads_m3 6353_1yo5_C_3D-footprint_20130124_ 0.907 0.412 0.161 -0.111 0.957 0.4334 0.90690 11 5 5 11 0.4545 0.4545 1.0000 R 1 .wtCCT..... TTCCT 4 50 52 50 8 4 6 24.8571 20
dyads_m3 2663_MF0004.1_JASPAR_CORE_2009_ dyads_m3 2663_MF0004.1_JASPAR_CORE_2009_ 0.823 0.449 1.215 0.029 0.919 0.9720 0.88381 11 6 6 11 0.5455 0.5455 1.0000 R 5 .....TGACnk TGACCY 23 25 44 40 18 14 14 25.4286 21
dyads_m3 6117_1hlz_A_3D-footprint_20130124_ dyads_m3 6117_1hlz_A_3D-footprint_20130124_ 0.810 0.442 4.810 0.406 0.902 1.1703 0.87251 11 6 6 11 0.5455 0.5455 1.0000 D 5 .....TGACnk TGACCT 28 28 27 22 32 20 25 26.0000 22
dyads_m3 6425_2ff0_A_3D-footprint_20130124_ dyads_m3 6425_2ff0_A_3D-footprint_20130124_ 0.768 0.512 8.005 0.494 0.874 2.0105 0.87467 11 9 8 12 0.6667 0.7273 0.8889 D -1 bwtCCTGA... .GgCCCtGA 51 4 1 4 29 57 45 27.2857 23
dyads_m3 5559_Meis3_DBD_1_HumanTF_1.0_ dyads_m3 5559_Meis3_DBD_1_HumanTF_1.0_ 0.778 0.495 5.733 0.476 0.890 1.5373 0.87475 11 7 7 11 0.6364 0.6364 1.0000 D 4 ....CTGACnk tTGACAg 47 11 24 8 28 39 36 27.5714 24
dyads_m3 7587_PPARA_f1_HOCOMOCO_v9_ dyads_m3 7587_PPARA_f1_HOCOMOCO_v9_ 0.832 0.454 1.994 0.020 0.906 1.1313 0.87465 11 6 6 11 0.5455 0.5455 1.0000 R 5 .....TGACnk TGACCT 21 22 37 42 30 19 22 27.5714 25
dyads_m3 5047_ZmHOX2a_1__Athamap_20091028_ dyads_m3 5047_ZmHOX2a_1__Athamap_20091028_ 0.781 0.497 6.083 0.458 0.887 1.5777 0.87312 11 7 7 11 0.6364 0.6364 1.0000 D 1 .wtCCTGA... rTCCTaa 45 9 19 12 31 40 38 27.7143 26
dyads_m3 2729_PF0042.1_JASPAR_CORE_2009_ dyads_m3 2729_PF0042.1_JASPAR_CORE_2009_ 0.836 0.418 7.699 0.395 0.887 1.3587 0.86263 11 7 6 12 0.5000 0.5455 0.8571 D 5 .....TGACnk TGACAT. 17 45 4 25 43 30 39 29.0000 27
dyads_m3 2712_PF0025.1_JASPAR_CORE_2009_ dyads_m3 2712_PF0025.1_JASPAR_CORE_2009_ 0.836 0.418 7.699 0.395 0.887 1.3587 0.86263 11 7 6 12 0.5000 0.5455 0.8571 D 5 .....TGACnk TGACCT. 17 45 4 25 43 30 39 29.0000 28
dyads_m3 6062_1fos_EF_3D-footprint_20130124_ dyads_m3 6062_1fos_EF_3D-footprint_20130124_ 0.810 0.405 1.749 0.199 0.914 1.0366 0.88001 11 7 6 12 0.5000 0.5455 0.8571 R 5 .....TGACnk TGACTC. 27 56 43 33 23 16 16 30.5714 29
dyads_m3 6405_2c9n_YZ_3D-footprint_20130124_ dyads_m3 6405_2c9n_YZ_3D-footprint_20130124_ 0.813 0.406 6.197 0.388 0.896 1.2445 0.86853 11 7 6 12 0.5000 0.5455 0.8571 D 5 .....TGACnk TGACTC. 25 55 17 28 36 24 31 30.8571 30
dyads_m3 2487_MA0098.1_JASPAR_CORE_2009_ dyads_m3 2487_MA0098.1_JASPAR_CORE_2009_ 0.772 0.421 3.641 0.389 0.906 1.1268 0.87490 11 6 6 11 0.5455 0.5455 1.0000 D 0 bwtCCT..... ywTCCk 49 43 33 27 27 18 21 31.1429 31
dyads_m3 2485_MA0096.1_JASPAR_CORE_2009_ dyads_m3 2485_MA0096.1_JASPAR_CORE_2009_ 0.779 0.496 7.926 0.452 0.865 1.8893 0.86115 11 7 7 11 0.6364 0.6364 1.0000 D 4 ....CTGACnk mTGACGT 46 10 2 14 47 55 48 31.7143 32
dyads_m3 1696_MA0129.1_JASPAR_CORE_2009_ dyads_m3 1696_MA0129.1_JASPAR_CORE_2009_ 0.835 0.418 0.300 -0.095 0.908 1.0987 0.87647 11 7 6 12 0.5000 0.5455 0.8571 R 5 .....TGACnk TGACGT. 20 47 47 48 25 17 19 31.8571 33
dyads_m3 6402_2c9l_YZ_3D-footprint_20130124_ dyads_m3 6402_2c9l_YZ_3D-footprint_20130124_ 0.807 0.403 5.940 0.381 0.899 1.2162 0.87003 11 7 6 12 0.5000 0.5455 0.8571 D 5 .....TGACnk TgACTc. 29 57 21 30 35 23 30 32.1429 34
dyads_m3 7604_RARG_f1_HOCOMOCO_v9_ dyads_m3 7604_RARG_f1_HOCOMOCO_v9_ 0.815 0.445 1.928 0.024 0.895 1.2559 0.86793 11 6 6 11 0.5455 0.5455 1.0000 R 5 .....TGACnk TGAMCT 24 26 41 41 37 26 32 32.4286 35
dyads_m3 7381_FOSB_f1_HOCOMOCO_v9_ dyads_m3 7381_FOSB_f1_HOCOMOCO_v9_ 0.792 0.427 3.681 0.232 0.895 1.4753 0.87731 11 9 7 13 0.5385 0.6364 0.7778 R 4 ....CTGACnk MTGACTC.. 35 36 32 31 24 36 33 32.4286 36
dyads_m3 6152_1jnm_B_3D-footprint_20130124_ dyads_m3 6152_1jnm_B_3D-footprint_20130124_ 0.832 0.454 0.120 -0.095 0.901 1.1875 0.87157 11 6 6 11 0.5455 0.5455 1.0000 R 4 ....CTGACn. RTGACS 22 23 55 47 34 22 28 33.0000 37
dyads_m3 7600_RARA_f1_HOCOMOCO_v9_ dyads_m3 7600_RARA_f1_HOCOMOCO_v9_ 0.836 0.456 1.930 -0.003 0.887 1.3587 0.86263 11 6 6 11 0.5455 0.5455 1.0000 R 5 .....TGACnk TGACCT 17 21 39 43 43 30 39 33.1429 38
dyads_m3 7373_ETS1_si_HOCOMOCO_v9_ dyads_m3 7373_ETS1_si_HOCOMOCO_v9_ 0.791 0.461 0.101 -0.162 0.906 1.3213 0.88388 11 8 7 12 0.5833 0.6364 0.8750 R -1 bwtCCTG.... .CWTCCKG 36 19 56 59 17 28 23 34.0000 39
dyads_m3 2602_MA0364.1_JASPAR_CORE_2009_ dyads_m3 2602_MA0364.1_JASPAR_CORE_2009_ 0.764 0.486 7.566 0.462 0.861 1.9460 0.85908 11 7 7 11 0.6364 0.6364 1.0000 D 1 .wtCCTGA... CCCCTGa 52 13 8 11 48 56 54 34.5714 40
dyads_m3 1715_MA0156.1_JASPAR_CORE_2009_ dyads_m3 1715_MA0156.1_JASPAR_CORE_2009_ 0.800 0.467 0.042 -0.156 0.902 1.3765 0.88149 11 8 7 12 0.5833 0.6364 0.8750 R -1 bwtCCTG.... .YTTCCTG 32 18 59 58 20 34 26 35.2857 41
dyads_m3 7678_THA_f1_HOCOMOCO_v9_ dyads_m3 7678_THA_f1_HOCOMOCO_v9_ 0.805 0.434 0.279 -0.141 0.899 1.4104 0.88003 11 9 7 13 0.5385 0.6364 0.7778 R 4 ....CTGACnk STGACCT.. 30 32 48 53 22 35 29 35.5714 42
dyads_m3 7372_ESR2_si_HOCOMOCO_v9_ dyads_m3 7372_ESR2_si_HOCOMOCO_v9_ 0.811 0.442 0.165 -0.151 0.889 1.3335 0.86391 11 6 6 11 0.5455 0.5455 1.0000 R 4 ....CTGACn. STGACC 26 27 51 56 42 29 37 38.2857 43
dyads_m3 7564_PAX2_si_HOCOMOCO_v9_ dyads_m3 7564_PAX2_si_HOCOMOCO_v9_ 0.789 0.430 5.884 0.438 0.858 1.6986 0.84641 11 6 6 11 0.5455 0.5455 1.0000 D 3 ...CCTGAC.. mrTGAC 37 34 23 17 56 46 55 38.2857 44
dyads_m3 7487_MAFG_si_HOCOMOCO_v9_ dyads_m3 7487_MAFG_si_HOCOMOCO_v9_ 0.769 0.419 7.319 0.429 0.862 1.6527 0.84850 11 6 6 11 0.5455 0.5455 1.0000 D 4 ....CTGACn. ATGACt 50 44 10 18 53 43 51 38.4286 45
dyads_m3 2536_MA0271.1_JASPAR_CORE_2009_ dyads_m3 2536_MA0271.1_JASPAR_CORE_2009_ 0.761 0.415 6.195 0.403 0.875 1.4953 0.85589 11 6 6 11 0.5455 0.5455 1.0000 D 5 .....TGACnk wGACkC 53 48 18 23 49 37 42 38.5714 46
dyads_m3 5997_1bc7_C_3D-footprint_20130124_ dyads_m3 5997_1bc7_C_3D-footprint_20130124_ 0.785 0.428 0.088 -0.137 0.894 1.2741 0.86697 11 6 6 11 0.5455 0.5455 1.0000 R 0 bwtCCT..... CATCCT 41 35 58 52 38 27 34 40.7143 47
dyads_m3 2763_PF0076.1_JASPAR_CORE_2009_ dyads_m3 2763_PF0076.1_JASPAR_CORE_2009_ 0.798 0.435 1.977 -0.012 0.863 1.6420 0.84898 11 6 6 11 0.5455 0.5455 1.0000 R 1 .wtCCTG.... TACCTG 33 31 38 45 51 41 49 41.1429 48
dyads_m3 7625_SNAI1_f1_HOCOMOCO_v9_ dyads_m3 7625_SNAI1_f1_HOCOMOCO_v9_ 0.781 0.497 0.095 -0.107 0.873 1.7766 0.86536 11 7 7 11 0.6364 0.6364 1.0000 R 0 bwtCCTG.... CCACCTG 44 8 57 49 41 53 46 42.5714 49
dyads_m3 4940_Hr46_DrosophilaTF_1.1_ dyads_m3 4940_Hr46_DrosophilaTF_1.1_ 0.794 0.433 1.930 -0.003 0.861 1.6664 0.84787 11 6 6 11 0.5455 0.5455 1.0000 R 5 .....TGACnk TGACCC 34 33 39 43 54 44 52 42.7143 50
dyads_m3 7472_JUNB_f1_HOCOMOCO_v9_ dyads_m3 7472_JUNB_f1_HOCOMOCO_v9_ 0.757 0.408 3.525 0.231 0.875 1.7538 0.86623 11 9 7 13 0.5385 0.6364 0.7778 R 4 ....CTGACnk MTGACTC.. 54 54 35 32 39 48 43 43.5714 51
dyads_m3 2699_PF0012.1_JASPAR_CORE_2009_ dyads_m3 2699_PF0012.1_JASPAR_CORE_2009_ 0.782 0.427 3.898 0.128 0.854 1.7574 0.84377 11 6 6 11 0.5455 0.5455 1.0000 R 1 .wtCCTG.... CACCTG 42 37 30 36 58 50 57 44.2857 52
dyads_m3 7626_SNAI2_f1_HOCOMOCO_v9_ dyads_m3 7626_SNAI2_f1_HOCOMOCO_v9_ 0.782 0.427 3.898 0.128 0.854 1.7574 0.84377 11 6 6 11 0.5455 0.5455 1.0000 R 1 .wtCCTG.... CACCTG 42 37 30 36 58 50 57 44.2857 53
dyads_m3 2476_MA0086.1_JASPAR_CORE_2009_ dyads_m3 2476_MA0086.1_JASPAR_CORE_2009_ 0.775 0.423 3.538 0.138 0.861 1.6677 0.84781 11 6 6 11 0.5455 0.5455 1.0000 R 1 .wtCCTG.... CACCTG 48 42 34 34 55 45 53 44.4286 54
dyads_m3 7552_NR4A3_f1_HOCOMOCO_v9_ dyads_m3 7552_NR4A3_f1_HOCOMOCO_v9_ 0.789 0.425 0.250 -0.149 0.874 1.7587 0.86604 11 9 7 13 0.5385 0.6364 0.7778 R 4 ....CTGACnk STGACCT.. 38 39 49 55 40 52 44 45.2857 55
dyads_m3 5598_NR2F1_full_HumanTF_1.0_ dyads_m3 5598_NR2F1_full_HumanTF_1.0_ 0.753 0.439 1.855 -0.012 0.866 1.8803 0.86148 11 8 7 12 0.5833 0.6364 0.8750 R 4 ....CTGACnk TTGACCY. 57 29 42 46 46 54 47 45.8571 56
dyads_m3 7700_ZEB1_do_HOCOMOCO_v9_ dyads_m3 7700_ZEB1_do_HOCOMOCO_v9_ 0.753 0.411 2.916 0.131 0.863 1.6429 0.84894 11 6 6 11 0.5455 0.5455 1.0000 R 1 .wtCCTG.... CACCTG 56 52 36 35 52 42 50 46.1429 57
dyads_m3 7471_ITF2_f1_HOCOMOCO_v9_ dyads_m3 7471_ITF2_f1_HOCOMOCO_v9_ 0.751 0.438 0.386 -0.132 0.850 2.1029 0.85352 11 8 7 12 0.5833 0.6364 0.8750 R -1 bwtCCTG.... .RCACCTG 59 30 46 51 50 59 59 50.5714 58
dyads_m3 6324_1t2k_D_3D-footprint_20130124_ dyads_m3 6324_1t2k_D_3D-footprint_20130124_ 0.751 0.410 0.128 -0.147 0.857 1.7201 0.84544 11 6 6 11 0.5455 0.5455 1.0000 R 4 ....CTGACn. TTGACA 58 53 54 54 57 47 56 54.1429 59 
 Host name	biow
 Job started	2014-09-05.204014
 Job done	2014-09-05.204102
 Seconds	31.05
	user	31.05
	system	1.25
	cuser	13.63
;	csystem	2.52