One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_footprintDB

One-to-n matrix alignment; reference matrix: dyads_m3_shift1 ; 60 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
dyads_m3_shift1 (dyads_m3)
; dyads_m3; m=0 (reference); ncol1=11; shift=1; ncol=13; -bwtCCTGACnk- ; Alignment reference a 0 7 18 11 0 0 0 0 52 0 13 12 0 c 0 17 11 8 52 52 0 0 0 52 13 9 0 g 0 14 9 7 0 0 0 52 0 0 13 14 0 t 0 14 14 26 0 0 52 0 0 0 13 17 0

1785_MA0227.1_JASPAR_CORE_2009__shift6 (1785_MA0227.1_JASPAR_CORE_2009_) 0.902 0.492 7.693 0.494 0.901 0.701 0.942 7 12 6 3 10 9 9 8.000 1
; dyads_m3 versus 1785_MA0227.1_JASPAR_CORE_2009_; m=1/59; ncol2=6; w=6; offset=5; strand=D; shift=6; score= 8; ------TGACAk- ; cor=0.902; Ncor=0.492; logoDP=7.693; NIcor=0.494; NsEucl=0.901; SSD=0.701; NSW=0.942; rcor=7; rNcor=12; rlogoDP=6; rNIcor=3; rNsEucl=10; rSSD=9; rNSW=9; rank_mean=8.000; match_rank=1 a 0 0 0 0 0 0 0 0 17 0 14 0 0 c 0 0 0 0 0 0 0 0 0 17 0 0 0 g 0 0 0 0 0 0 0 17 0 0 3 8 0 t 0 0 0 0 0 0 17 0 0 0 0 4 0

1810_MA0252.1_JASPAR_CORE_2009__shift6 (1810_MA0252.1_JASPAR_CORE_2009_) 0.881 0.480 7.688 0.471 0.891 0.861 0.928 9 14 7 9 14 12 12 11.000 2
; dyads_m3 versus 1810_MA0252.1_JASPAR_CORE_2009_; m=2/59; ncol2=6; w=6; offset=5; strand=D; shift=6; score= 11; ------TGACAs- ; cor=0.881; Ncor=0.480; logoDP=7.688; NIcor=0.471; NsEucl=0.891; SSD=0.861; NSW=0.928; rcor=9; rNcor=14; rlogoDP=7; rNIcor=9; rNsEucl=14; rSSD=12; rNSW=12; rank_mean=11.000; match_rank=2 a 0 0 0 0 0 0 0 0 22 0 22 2 0 c 0 0 0 0 0 0 0 0 0 22 0 4 0 g 0 0 0 0 0 0 0 22 0 0 0 8 0 t 0 0 0 0 0 0 22 0 0 0 0 2 0

7677_TGIF1_si_HOCOMOCO_v9__shift6 (7677_TGIF1_si_HOCOMOCO_v9_) 0.874 0.477 7.265 0.464 0.889 0.889 0.926 11 15 11 10 15 13 13 12.571 3
; dyads_m3 versus 7677_TGIF1_si_HOCOMOCO_v9_; m=3/59; ncol2=6; w=6; offset=5; strand=D; shift=6; score=12.5714; ------TGACAg- ; cor=0.874; Ncor=0.477; logoDP=7.265; NIcor=0.464; NsEucl=0.889; SSD=0.889; NSW=0.926; rcor=11; rNcor=15; rlogoDP=11; rNIcor=10; rNsEucl=15; rSSD=13; rNSW=13; rank_mean=12.571; match_rank=3 a 0 0 0 0 0 0 0 0 16 0 16 3 0 c 0 0 0 0 0 0 0 1 0 16 0 2 0 g 0 0 0 0 0 0 0 15 0 0 0 9 0 t 0 0 0 0 0 0 16 0 0 0 0 2 0

6403_2c9l_Z_3D-footprint_20130124__shift6 (6403_2c9l_Z_3D-footprint_20130124_) 0.934 0.424 5.939 0.413 0.912 0.387 0.961 1 40 22 21 3 1 1 12.714 4
; dyads_m3 versus 6403_2c9l_Z_3D-footprint_20130124_; m=4/59; ncol2=5; w=5; offset=5; strand=D; shift=6; score=12.7143; ------TgACt-- ; cor=0.934; Ncor=0.424; logoDP=5.939; NIcor=0.413; NsEucl=0.912; SSD=0.387; NSW=0.961; rcor=1; rNcor=40; rlogoDP=22; rNIcor=21; rNsEucl=3; rSSD=1; rNSW=1; rank_mean=12.714; match_rank=4 a 0 0 0 0 0 0 0 16 96 0 16 0 0 c 0 0 0 0 0 0 0 13 0 96 13 0 0 g 0 0 0 0 0 0 0 54 0 0 13 0 0 t 0 0 0 0 0 0 96 13 0 0 54 0 0

2703_PF0016.1_JASPAR_CORE_2009__shift0 (2703_PF0016.1_JASPAR_CORE_2009_) 0.861 0.502 7.816 0.483 0.887 1.247 0.911 15 6 3 7 16 25 18 12.857 5
; dyads_m3 versus 2703_PF0016.1_JASPAR_CORE_2009_; m=5/59; ncol2=8; w=7; offset=-1; strand=D; shift=0; score=12.8571; ryTTCCTG----- ; cor=0.861; Ncor=0.502; logoDP=7.816; NIcor=0.483; NsEucl=0.887; SSD=1.247; NSW=0.911; rcor=15; rNcor=6; rlogoDP=3; rNIcor=7; rNsEucl=16; rSSD=25; rNSW=18; rank_mean=12.857; match_rank=5 a 2493 0 0 0 0 0 0 0 0 0 0 0 0 c 0 2704 0 0 4512 4512 0 0 0 0 0 0 0 g 2019 0 0 0 0 0 0 4512 0 0 0 0 0 t 0 1808 4512 4512 0 0 4512 0 0 0 0 0 0

6291_1r0n_A_3D-footprint_20130124__shift6 (6291_1r0n_A_3D-footprint_20130124_) 0.930 0.423 5.339 0.414 0.910 0.406 0.959 2 41 26 20 4 2 2 13.857 6
; dyads_m3 versus 6291_1r0n_A_3D-footprint_20130124_; m=6/59; ncol2=5; w=5; offset=5; strand=D; shift=6; score=13.8571; ------TGaCc-- ; cor=0.930; Ncor=0.423; logoDP=5.339; NIcor=0.414; NsEucl=0.910; SSD=0.406; NSW=0.959; rcor=2; rNcor=41; rlogoDP=26; rNIcor=20; rNsEucl=4; rSSD=2; rNSW=2; rank_mean=13.857; match_rank=6 a 0 0 0 0 0 0 0 0 60 0 12 0 0 c 0 0 0 0 0 0 0 0 12 96 60 0 0 g 0 0 0 0 0 0 0 84 12 0 12 0 0 t 0 0 0 0 0 0 96 12 12 0 12 0 0

6477_2nny_A_3D-footprint_20130124__shift1 (6477_2nny_A_3D-footprint_20130124_) 0.867 0.473 4.762 0.450 0.896 0.776 0.935 13 16 28 15 11 10 10 14.714 7
; dyads_m3 versus 6477_2nny_A_3D-footprint_20130124_; m=7/59; ncol2=6; w=6; offset=0; strand=D; shift=1; score=14.7143; -cTTCCT------ ; cor=0.867; Ncor=0.473; logoDP=4.762; NIcor=0.450; NsEucl=0.896; SSD=0.776; NSW=0.935; rcor=13; rNcor=16; rlogoDP=28; rNIcor=15; rNsEucl=11; rSSD=10; rNSW=10; rank_mean=14.714; match_rank=7 a 0 9 20 0 0 0 9 0 0 0 0 0 0 c 0 59 0 0 96 96 0 0 0 0 0 0 0 g 0 9 9 0 0 0 11 0 0 0 0 0 0 t 0 19 67 96 0 0 76 0 0 0 0 0 0

1766_MA0207.1_JASPAR_CORE_2009__shift6 (1766_MA0207.1_JASPAR_CORE_2009_) 0.862 0.470 7.371 0.456 0.881 1.021 0.915 14 17 9 13 21 15 15 14.857 8
; dyads_m3 versus 1766_MA0207.1_JASPAR_CORE_2009_; m=8/59; ncol2=6; w=6; offset=5; strand=D; shift=6; score=14.8571; ------TGACAG- ; cor=0.862; Ncor=0.470; logoDP=7.371; NIcor=0.456; NsEucl=0.881; SSD=1.021; NSW=0.915; rcor=14; rNcor=17; rlogoDP=9; rNIcor=13; rNsEucl=21; rSSD=15; rNSW=15; rank_mean=14.857; match_rank=8 a 0 0 0 0 0 0 0 0 23 0 23 3 0 c 0 0 0 0 0 0 0 0 0 22 0 0 0 g 0 0 0 0 0 0 0 23 0 0 0 12 0 t 0 0 0 0 0 0 23 0 0 1 0 2 0

5102_SigH_1_DBTBS_1.0__rc_shift0 (5102_SigH_1_DBTBS_1.0__rc) 0.907 0.453 0.959 0.037 0.917 0.501 0.958 5 24 45 38 1 5 4 17.429 9
; dyads_m3 versus 5102_SigH_1_DBTBS_1.0__rc; m=9/59; ncol2=7; w=6; offset=-1; strand=R; shift=0; score=17.4286; AwhTCCT------ ; cor=0.907; Ncor=0.453; logoDP=0.959; NIcor=0.037; NsEucl=0.917; SSD=0.501; NSW=0.958; rcor=5; rNcor=24; rlogoDP=45; rNIcor=38; rNsEucl=1; rSSD=5; rNSW=4; rank_mean=17.429; match_rank=9 a 0.81 0.49 0.33 0 0 0 0 0 0 0 0 0 0 c 0.05 0.06 0.32 0.23 1 0.94 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 t 0.13 0.45 0.36 0.77 0 0.06 1 0 0 0 0 0 0

7306_ATF3_f1_HOCOMOCO_v9__shift6 (7306_ATF3_f1_HOCOMOCO_v9_) 0.895 0.413 5.654 0.423 0.908 0.612 0.949 8 49 25 19 7 8 7 17.571 10
; dyads_m3 versus 7306_ATF3_f1_HOCOMOCO_v9_; m=10/59; ncol2=8; w=6; offset=5; strand=D; shift=6; score=17.5714; ------TGAykym ; cor=0.895; Ncor=0.413; logoDP=5.654; NIcor=0.423; NsEucl=0.908; SSD=0.612; NSW=0.949; rcor=8; rNcor=49; rlogoDP=25; rNIcor=19; rNsEucl=7; rSSD=8; rNSW=7; rank_mean=17.571; match_rank=10 a 0 0 0 0 0 0 15 3 1972 13 54 109 680 c 0 0 0 0 0 0 9 18 15 1319 129 1024 892 g 0 0 0 0 0 0 12 2011 9 138 1121 26 259 t 0 0 0 0 0 0 2000 4 40 566 732 877 205

6695_3ri4_A_3D-footprint_20130124__rc_shift1 (6695_3ri4_A_3D-footprint_20130124__rc) 0.923 0.503 0.136 -0.154 0.916 0.507 0.958 3 5 53 57 2 6 5 18.714 11
; dyads_m3 versus 6695_3ri4_A_3D-footprint_20130124__rc; m=11/59; ncol2=6; w=6; offset=0; strand=R; shift=1; score=18.7143; -caTCCT------ ; cor=0.923; Ncor=0.503; logoDP=0.136; NIcor=-0.154; NsEucl=0.916; SSD=0.507; NSW=0.958; rcor=3; rNcor=5; rlogoDP=53; rNIcor=57; rNsEucl=2; rSSD=6; rNSW=5; rank_mean=18.714; match_rank=11 a 0 13 57 0 0 0 0 0 0 0 0 0 0 c 0 54 13 0 96 96 0 0 0 0 0 0 0 g 0 13 13 0 0 0 0 0 0 0 0 0 0 t 0 16 13 96 0 0 96 0 0 0 0 0 0

5025_HVH21_Athamap_20091028__shift2 (5025_HVH21_Athamap_20091028_) 0.787 0.606 6.270 0.609 0.906 1.757 0.912 39 2 16 2 9 49 17 19.143 12
; dyads_m3 versus 5025_HVH21_Athamap_20091028_; m=12/59; ncol2=12; w=10; offset=1; strand=D; shift=2; score=19.1429; --bmysTGACrgg ; cor=0.787; Ncor=0.606; logoDP=6.270; NIcor=0.609; NsEucl=0.906; SSD=1.757; NSW=0.912; rcor=39; rNcor=2; rlogoDP=16; rNIcor=2; rNsEucl=9; rSSD=49; rNSW=17; rank_mean=19.143; match_rank=12 a 0 0 3 14 5 4 0 1 37 1 15 4 9 c 0 0 12 11 12 14 3 1 0 35 8 8 6 g 0 0 11 9 7 16 1 35 0 0 13 18 13 t 0 0 11 3 13 3 33 0 0 1 1 7 9

5520_MEIS1_DBD_HumanTF_1.0__shift5 (5520_MEIS1_DBD_HumanTF_1.0_) 0.805 0.512 5.969 0.493 0.882 1.363 0.903 31 3 20 5 19 33 24 19.286 13
; dyads_m3 versus 5520_MEIS1_DBD_HumanTF_1.0_; m=13/59; ncol2=7; w=7; offset=4; strand=D; shift=5; score=19.2857; -----wTGACAg- ; cor=0.805; Ncor=0.512; logoDP=5.969; NIcor=0.493; NsEucl=0.882; SSD=1.363; NSW=0.903; rcor=31; rNcor=3; rlogoDP=20; rNIcor=5; rNsEucl=19; rSSD=33; rNSW=24; rank_mean=19.286; match_rank=13 a 0 0 0 0 0 23727 8690 0 77159 0 77159 17224 0 c 0 0 0 0 0 18797 5575 1249 2903 77159 0 14864 0 g 0 0 0 0 0 9714 3174 77159 672 0 9263 29965 0 t 0 0 0 0 0 24921 77159 0 0 1155 3861 15106 0

6562_3dzu_A_3D-footprint_20130124__shift6 (6562_3dzu_A_3D-footprint_20130124_) 0.906 0.412 4.328 0.399 0.896 0.540 0.946 6 51 29 24 12 7 8 19.571 14
; dyads_m3 versus 6562_3dzu_A_3D-footprint_20130124_; m=14/59; ncol2=5; w=5; offset=5; strand=D; shift=6; score=19.5714; ------TGACC-- ; cor=0.906; Ncor=0.412; logoDP=4.328; NIcor=0.399; NsEucl=0.896; SSD=0.540; NSW=0.946; rcor=6; rNcor=51; rlogoDP=29; rNIcor=24; rNsEucl=12; rSSD=7; rNSW=8; rank_mean=19.571; match_rank=14 a 0 0 0 0 0 0 0 8 69 0 8 0 0 c 0 0 0 0 0 0 0 8 11 96 72 0 0 g 0 0 0 0 0 0 9 72 8 0 8 0 0 t 0 0 0 0 0 0 87 8 8 0 8 0 0

2661_MF0002.1_JASPAR_CORE_2009__shift6 (2661_MF0002.1_JASPAR_CORE_2009_) 0.844 0.460 6.980 0.440 0.872 1.180 0.902 16 20 12 16 33 21 27 20.714 15
; dyads_m3 versus 2661_MF0002.1_JASPAR_CORE_2009_; m=15/59; ncol2=6; w=6; offset=5; strand=D; shift=6; score=20.7143; ------TGACGT- ; cor=0.844; Ncor=0.460; logoDP=6.980; NIcor=0.440; NsEucl=0.872; SSD=1.180; NSW=0.902; rcor=16; rNcor=20; rlogoDP=12; rNIcor=16; rNsEucl=33; rSSD=21; rNSW=27; rank_mean=20.714; match_rank=15 a 0 0 0 0 0 0 0 0.74 100 0 0 2.06 0 c 0 0 0 0 0 0 0 0 0 94.06 0 10.32 0 g 0 0 0 0 0 0 0 96.97 0 1.48 100 0 0 t 0 0 0 0 0 0 100 2.29 0 4.46 0 87.61 0

6038_1dh3_AC_3D-footprint_20130124__shift6 (6038_1dh3_AC_3D-footprint_20130124_) 0.870 0.401 6.725 0.387 0.891 0.849 0.929 12 58 15 29 13 11 11 21.286 16
; dyads_m3 versus 6038_1dh3_AC_3D-footprint_20130124_; m=16/59; ncol2=8; w=6; offset=5; strand=D; shift=6; score=21.2857; ------TGACGnc ; cor=0.870; Ncor=0.401; logoDP=6.725; NIcor=0.387; NsEucl=0.891; SSD=0.849; NSW=0.929; rcor=12; rNcor=58; rlogoDP=15; rNIcor=29; rNsEucl=13; rSSD=11; rNSW=11; rank_mean=21.286; match_rank=16 a 0 0 0 0 0 0 0 0 96 0 0 24 20 c 0 0 0 0 0 0 0 0 0 76 0 24 38 g 0 0 0 0 0 0 0 96 0 20 96 24 19 t 0 0 0 0 0 0 96 0 0 0 0 24 19

328_RAV1_2__Athamap_20091028__shift0 (328_RAV1_2__Athamap_20091028_) 0.757 0.694 6.923 0.676 0.908 2.039 0.907 55 1 13 1 6 58 20 22.000 17
; dyads_m3 versus 328_RAV1_2__Athamap_20091028_; m=17/59; ncol2=12; w=11; offset=-1; strand=D; shift=0; score= 22; wtCaCCTGrssy- ; cor=0.757; Ncor=0.694; logoDP=6.923; NIcor=0.676; NsEucl=0.908; SSD=2.039; NSW=0.907; rcor=55; rNcor=1; rlogoDP=13; rNIcor=1; rNsEucl=6; rSSD=58; rNSW=20; rank_mean=22.000; match_rank=17 a 22 13 8 40 1 0 0 0 24 12 12 8 0 c 12 15 49 6 56 65 0 0 7 15 14 20 0 g 10 8 1 8 3 0 0 58 19 18 16 5 0 t 18 28 7 11 5 0 65 0 5 9 10 13 0

5557_Meis2_DBD_1_HumanTF_1.0__shift5 (5557_Meis2_DBD_1_HumanTF_1.0_) 0.787 0.501 6.750 0.483 0.875 1.531 0.891 40 7 14 6 26 38 35 23.714 18
; dyads_m3 versus 5557_Meis2_DBD_1_HumanTF_1.0_; m=18/59; ncol2=7; w=7; offset=4; strand=D; shift=5; score=23.7143; -----wTGACAg- ; cor=0.787; Ncor=0.501; logoDP=6.750; NIcor=0.483; NsEucl=0.875; SSD=1.531; NSW=0.891; rcor=40; rNcor=7; rlogoDP=14; rNIcor=6; rNsEucl=26; rSSD=38; rNSW=35; rank_mean=23.714; match_rank=18 a 0 0 0 0 0 3191 1106 0 11413 0 11413 2014 0 c 0 0 0 0 0 2302 563 0 0 11413 33 1878 0 g 0 0 0 0 0 1764 260 11413 0 0 874 5578 0 t 0 0 0 0 0 4156 11413 0 0 21 458 1943 0

6590_3g97_A_3D-footprint_20130124__rc_shift1 (6590_3g97_A_3D-footprint_20130124__rc) 0.881 0.400 0.210 0.032 0.910 0.406 0.959 10 59 50 39 5 3 3 24.143 19
; dyads_m3 versus 6590_3g97_A_3D-footprint_20130124__rc; m=19/59; ncol2=5; w=5; offset=0; strand=R; shift=1; score=24.1429; -gnaCC------- ; cor=0.881; Ncor=0.400; logoDP=0.210; NIcor=0.032; NsEucl=0.910; SSD=0.406; NSW=0.959; rcor=10; rNcor=59; rlogoDP=50; rNIcor=39; rNsEucl=5; rSSD=3; rNSW=3; rank_mean=24.143; match_rank=19 a 0 13 24 54 0 0 0 0 0 0 0 0 0 c 0 13 24 16 96 96 0 0 0 0 0 0 0 g 0 54 24 13 0 0 0 0 0 0 0 0 0 t 0 16 24 13 0 0 0 0 0 0 0 0 0

6353_1yo5_C_3D-footprint_20130124__rc_shift2 (6353_1yo5_C_3D-footprint_20130124__rc) 0.907 0.412 0.161 -0.111 0.907 0.433 0.957 4 50 52 50 8 4 6 24.857 20
; dyads_m3 versus 6353_1yo5_C_3D-footprint_20130124__rc; m=20/59; ncol2=5; w=5; offset=1; strand=R; shift=2; score=24.8571; --TTCCT------ ; cor=0.907; Ncor=0.412; logoDP=0.161; NIcor=-0.111; NsEucl=0.907; SSD=0.433; NSW=0.957; rcor=4; rNcor=50; rlogoDP=52; rNIcor=50; rNsEucl=8; rSSD=4; rNSW=6; rank_mean=24.857; match_rank=20 a 0 0 11 11 0 0 9 0 0 0 0 0 0 c 0 0 9 9 96 96 9 0 0 0 0 0 0 g 0 0 9 9 0 0 11 0 0 0 0 0 0 t 0 0 67 67 0 0 67 0 0 0 0 0 0

2663_MF0004.1_JASPAR_CORE_2009__rc_shift6 (2663_MF0004.1_JASPAR_CORE_2009__rc) 0.823 0.449 1.215 0.029 0.884 0.972 0.919 23 25 44 40 18 14 14 25.429 21
; dyads_m3 versus 2663_MF0004.1_JASPAR_CORE_2009__rc; m=21/59; ncol2=6; w=6; offset=5; strand=R; shift=6; score=25.4286; ------TGACCy- ; cor=0.823; Ncor=0.449; logoDP=1.215; NIcor=0.029; NsEucl=0.884; SSD=0.972; NSW=0.919; rcor=23; rNcor=25; rlogoDP=44; rNIcor=40; rNsEucl=18; rSSD=14; rNSW=14; rank_mean=25.429; match_rank=21 a 0 0 0 0 0 0 1.63 5.04 73.94 11.99 9.52 10.53 0 c 0 0 0 0 0 0 6.62 4.08 6.77 80.06 86.63 37.1 0 g 0 0 0 0 0 0 17.39 77.72 4.74 2.36 0.69 3.5 0 t 0 0 0 0 0 0 74.36 13.16 14.55 5.58 3.16 48.87 0

6117_1hlz_A_3D-footprint_20130124__shift6 (6117_1hlz_A_3D-footprint_20130124_) 0.810 0.442 4.810 0.406 0.873 1.170 0.902 28 28 27 22 32 20 25 26.000 22
; dyads_m3 versus 6117_1hlz_A_3D-footprint_20130124_; m=22/59; ncol2=6; w=6; offset=5; strand=D; shift=6; score= 26; ------TGACCT- ; cor=0.810; Ncor=0.442; logoDP=4.810; NIcor=0.406; NsEucl=0.873; SSD=1.170; NSW=0.902; rcor=28; rNcor=28; rlogoDP=27; rNIcor=22; rNsEucl=32; rSSD=20; rNSW=25; rank_mean=26.000; match_rank=22 a 0 0 0 0 0 0 0 9 69 0 0 9 0 c 0 0 0 0 0 0 0 9 9 96 96 9 0 g 0 0 0 0 0 0 0 69 9 0 0 9 0 t 0 0 0 0 0 0 96 9 9 0 0 69 0

6425_2ff0_A_3D-footprint_20130124__shift0 (6425_2ff0_A_3D-footprint_20130124_) 0.768 0.512 8.005 0.494 0.875 2.011 0.874 51 4 1 4 29 57 45 27.286 23
; dyads_m3 versus 6425_2ff0_A_3D-footprint_20130124_; m=23/59; ncol2=9; w=8; offset=-1; strand=D; shift=0; score=27.2857; TGgCCCtGA---- ; cor=0.768; Ncor=0.512; logoDP=8.005; NIcor=0.494; NsEucl=0.875; SSD=2.011; NSW=0.874; rcor=51; rNcor=4; rlogoDP=1; rNIcor=4; rNsEucl=29; rSSD=57; rNSW=45; rank_mean=27.286; match_rank=23 a 0 0 12 0 0 0 12 0 96 0 0 0 0 c 0 0 12 96 96 96 12 0 0 0 0 0 0 g 0 84 60 0 0 0 12 96 0 0 0 0 0 t 96 12 12 0 0 0 60 0 0 0 0 0 0

5559_Meis3_DBD_1_HumanTF_1.0__shift5 (5559_Meis3_DBD_1_HumanTF_1.0_) 0.778 0.495 5.733 0.476 0.875 1.537 0.890 47 11 24 8 28 39 36 27.571 24
; dyads_m3 versus 5559_Meis3_DBD_1_HumanTF_1.0_; m=24/59; ncol2=7; w=7; offset=4; strand=D; shift=5; score=27.5714; -----tTGACAg- ; cor=0.778; Ncor=0.495; logoDP=5.733; NIcor=0.476; NsEucl=0.875; SSD=1.537; NSW=0.890; rcor=47; rNcor=11; rlogoDP=24; rNIcor=8; rNsEucl=28; rSSD=39; rNSW=36; rank_mean=27.571; match_rank=24 a 0 0 0 0 0 1199 455 0 4901 0 4901 814 0 c 0 0 0 0 0 1028 539 0 450 4901 0 881 0 g 0 0 0 0 0 844 478 4901 40 44 682 2421 0 t 0 0 0 0 0 1829 4901 0 0 0 76 785 0

7587_PPARA_f1_HOCOMOCO_v9__rc_shift6 (7587_PPARA_f1_HOCOMOCO_v9__rc) 0.832 0.454 1.994 0.020 0.875 1.131 0.906 21 22 37 42 30 19 22 27.571 25
; dyads_m3 versus 7587_PPARA_f1_HOCOMOCO_v9__rc; m=25/59; ncol2=6; w=6; offset=5; strand=R; shift=6; score=27.5714; ------TGACCT- ; cor=0.832; Ncor=0.454; logoDP=1.994; NIcor=0.020; NsEucl=0.875; SSD=1.131; NSW=0.906; rcor=21; rNcor=22; rlogoDP=37; rNIcor=42; rNsEucl=30; rSSD=19; rNSW=22; rank_mean=27.571; match_rank=25 a 0 0 0 0 0 0 7 1 103 7 0 2 0 c 0 0 0 0 0 0 7 0 4 105 114 20 0 g 0 0 0 0 0 0 0 112 4 2 0 1 0 t 0 0 0 0 0 0 100 1 3 0 0 91 0

5047_ZmHOX2a_1__Athamap_20091028__shift2 (5047_ZmHOX2a_1__Athamap_20091028_) 0.781 0.497 6.083 0.458 0.873 1.578 0.887 45 9 19 12 31 40 38 27.714 26
; dyads_m3 versus 5047_ZmHOX2a_1__Athamap_20091028_; m=26/59; ncol2=7; w=7; offset=1; strand=D; shift=2; score=27.7143; --rTCCTaa---- ; cor=0.781; Ncor=0.497; logoDP=6.083; NIcor=0.458; NsEucl=0.873; SSD=1.578; NSW=0.887; rcor=45; rNcor=9; rlogoDP=19; rNIcor=12; rNsEucl=31; rSSD=40; rNSW=38; rank_mean=27.714; match_rank=26 a 0 0 11 0 0 0 0 17 21 0 0 0 0 c 0 0 4 0 38 38 0 7 6 0 0 0 0 g 0 0 16 0 0 0 0 8 3 0 0 0 0 t 0 0 7 38 0 0 38 6 8 0 0 0 0

2729_PF0042.1_JASPAR_CORE_2009__shift6 (2729_PF0042.1_JASPAR_CORE_2009_) 0.836 0.418 7.699 0.395 0.863 1.359 0.887 17 45 4 25 43 30 39 29.000 27
; dyads_m3 versus 2729_PF0042.1_JASPAR_CORE_2009_; m=27/59; ncol2=7; w=6; offset=5; strand=D; shift=6; score= 29; ------TGACATy ; cor=0.836; Ncor=0.418; logoDP=7.699; NIcor=0.395; NsEucl=0.863; SSD=1.359; NSW=0.887; rcor=17; rNcor=45; rlogoDP=4; rNIcor=25; rNsEucl=43; rSSD=30; rNSW=39; rank_mean=29.000; match_rank=27 a 0 0 0 0 0 0 0 0 2500 0 2500 0 0 c 0 0 0 0 0 0 0 0 0 2500 0 0 1416 g 0 0 0 0 0 0 0 2500 0 0 0 0 0 t 0 0 0 0 0 0 2500 0 0 0 0 2500 1084

2712_PF0025.1_JASPAR_CORE_2009__shift6 (2712_PF0025.1_JASPAR_CORE_2009_) 0.836 0.418 7.699 0.395 0.863 1.359 0.887 17 45 4 25 43 30 39 29.000 28
; dyads_m3 versus 2712_PF0025.1_JASPAR_CORE_2009_; m=28/59; ncol2=7; w=6; offset=5; strand=D; shift=6; score= 29; ------TGACCTy ; cor=0.836; Ncor=0.418; logoDP=7.699; NIcor=0.395; NsEucl=0.863; SSD=1.359; NSW=0.887; rcor=17; rNcor=45; rlogoDP=4; rNIcor=25; rNsEucl=43; rSSD=30; rNSW=39; rank_mean=29.000; match_rank=28 a 0 0 0 0 0 0 0 0 3728 0 0 0 0 c 0 0 0 0 0 0 0 0 0 3728 3728 0 1530 g 0 0 0 0 0 0 0 3728 0 0 0 0 0 t 0 0 0 0 0 0 3728 0 0 0 0 3728 2198

6062_1fos_EF_3D-footprint_20130124__rc_shift6 (6062_1fos_EF_3D-footprint_20130124__rc) 0.810 0.405 1.749 0.199 0.880 1.037 0.914 27 56 43 33 23 16 16 30.571 29
; dyads_m3 versus 6062_1fos_EF_3D-footprint_20130124__rc; m=29/59; ncol2=7; w=6; offset=5; strand=R; shift=6; score=30.5714; ------TgACTca ; cor=0.810; Ncor=0.405; logoDP=1.749; NIcor=0.199; NsEucl=0.880; SSD=1.037; NSW=0.914; rcor=27; rNcor=56; rlogoDP=43; rNIcor=33; rNsEucl=23; rSSD=16; rNSW=16; rank_mean=30.571; match_rank=29 a 0 0 0 0 0 0 7 13 72 2 3 21 65 c 0 0 0 0 0 0 7 14 10 78 4 33 11 g 0 0 0 0 0 0 6 56 7 16 3 21 10 t 0 0 0 0 0 0 76 13 7 0 86 21 10

6405_2c9n_YZ_3D-footprint_20130124__shift6 (6405_2c9n_YZ_3D-footprint_20130124_) 0.813 0.406 6.197 0.388 0.869 1.244 0.896 25 55 17 28 36 24 31 30.857 30
; dyads_m3 versus 6405_2c9n_YZ_3D-footprint_20130124_; m=30/59; ncol2=7; w=6; offset=5; strand=D; shift=6; score=30.8571; ------TGACTCA ; cor=0.813; Ncor=0.406; logoDP=6.197; NIcor=0.388; NsEucl=0.869; SSD=1.244; NSW=0.896; rcor=25; rNcor=55; rlogoDP=17; rNIcor=28; rNsEucl=36; rSSD=24; rNSW=31; rank_mean=30.857; match_rank=30 a 0 0 0 0 0 0 0 9 96 0 0 9 67 c 0 0 0 0 0 0 0 11 0 96 0 67 9 g 0 0 0 0 0 0 0 67 0 0 0 11 11 t 0 0 0 0 0 0 96 9 0 0 96 9 9

2487_MA0098.1_JASPAR_CORE_2009__shift1 (2487_MA0098.1_JASPAR_CORE_2009_) 0.772 0.421 3.641 0.389 0.875 1.127 0.906 49 43 33 27 27 18 21 31.143 31
; dyads_m3 versus 2487_MA0098.1_JASPAR_CORE_2009_; m=31/59; ncol2=6; w=6; offset=0; strand=D; shift=1; score=31.1429; -ywTCCk------ ; cor=0.772; Ncor=0.421; logoDP=3.641; NIcor=0.389; NsEucl=0.875; SSD=1.127; NSW=0.906; rcor=49; rNcor=43; rlogoDP=33; rNIcor=27; rNsEucl=27; rSSD=18; rNSW=21; rank_mean=31.143; match_rank=31 a 0 4 17 0 0 0 5 0 0 0 0 0 0 c 0 16 0 1 39 39 3 0 0 0 0 0 0 g 0 4 0 0 1 0 17 0 0 0 0 0 0 t 0 16 23 39 0 1 15 0 0 0 0 0 0

2485_MA0096.1_JASPAR_CORE_2009__shift5 (2485_MA0096.1_JASPAR_CORE_2009_) 0.779 0.496 7.926 0.452 0.861 1.889 0.865 46 10 2 14 47 55 48 31.714 32
; dyads_m3 versus 2485_MA0096.1_JASPAR_CORE_2009_; m=32/59; ncol2=7; w=7; offset=4; strand=D; shift=5; score=31.7143; -----mTGACGT- ; cor=0.779; Ncor=0.496; logoDP=7.926; NIcor=0.452; NsEucl=0.861; SSD=1.889; NSW=0.865; rcor=46; rNcor=10; rlogoDP=2; rNIcor=14; rNsEucl=47; rSSD=55; rNSW=48; rank_mean=31.714; match_rank=32 a 0 0 0 0 0 15 0 0 35 0 0 0 0 c 0 0 0 0 0 15 0 0 0 35 0 0 0 g 0 0 0 0 0 5 0 35 0 0 35 0 0 t 0 0 0 0 0 0 35 0 0 0 0 35 0

1696_MA0129.1_JASPAR_CORE_2009__rc_shift6 (1696_MA0129.1_JASPAR_CORE_2009__rc) 0.835 0.418 0.300 -0.095 0.876 1.099 0.908 20 47 47 48 25 17 19 31.857 33
; dyads_m3 versus 1696_MA0129.1_JASPAR_CORE_2009__rc; m=33/59; ncol2=7; w=6; offset=5; strand=R; shift=6; score=31.8571; ------TGACGTd ; cor=0.835; Ncor=0.418; logoDP=0.300; NIcor=-0.095; NsEucl=0.876; SSD=1.099; NSW=0.908; rcor=20; rNcor=47; rlogoDP=47; rNIcor=48; rNsEucl=25; rSSD=17; rNSW=19; rank_mean=31.857; match_rank=33 a 0 0 0 0 0 0 1 0 14 0 1 1 7 c 0 0 0 0 0 0 1 0 0 13 0 1 0 g 0 0 0 0 0 0 0 15 0 0 14 0 4 t 0 0 0 0 0 0 13 0 1 2 0 13 4

6402_2c9l_YZ_3D-footprint_20130124__shift6 (6402_2c9l_YZ_3D-footprint_20130124_) 0.807 0.403 5.940 0.381 0.870 1.216 0.899 29 57 21 30 35 23 30 32.143 34
; dyads_m3 versus 6402_2c9l_YZ_3D-footprint_20130124_; m=34/59; ncol2=7; w=6; offset=5; strand=D; shift=6; score=32.1429; ------TgACTcA ; cor=0.807; Ncor=0.403; logoDP=5.940; NIcor=0.381; NsEucl=0.870; SSD=1.216; NSW=0.899; rcor=29; rNcor=57; rlogoDP=21; rNIcor=30; rNsEucl=35; rSSD=23; rNSW=30; rank_mean=32.143; match_rank=34 a 0 0 0 0 0 0 0 13 96 0 0 16 96 c 0 0 0 0 0 0 0 16 0 96 0 54 0 g 0 0 0 0 0 0 0 54 0 0 0 13 0 t 0 0 0 0 0 0 96 13 0 0 96 13 0

7604_RARG_f1_HOCOMOCO_v9__rc_shift6 (7604_RARG_f1_HOCOMOCO_v9__rc) 0.815 0.445 1.928 0.024 0.868 1.256 0.895 24 26 41 41 37 26 32 32.429 35
; dyads_m3 versus 7604_RARG_f1_HOCOMOCO_v9__rc; m=35/59; ncol2=6; w=6; offset=5; strand=R; shift=6; score=32.4286; ------TGAMCT- ; cor=0.815; Ncor=0.445; logoDP=1.928; NIcor=0.024; NsEucl=0.868; SSD=1.256; NSW=0.895; rcor=24; rNcor=26; rlogoDP=41; rNIcor=41; rNsEucl=37; rSSD=26; rNSW=32; rank_mean=32.429; match_rank=35 a 0 0 0 0 0 0 0 0 29 8 0 0 0 c 0 0 0 0 0 0 0 0 0 21 29 6 0 g 0 0 0 0 0 0 2 29 0 0 0 0 0 t 0 0 0 0 0 0 27 0 0 0 0 23 0

7381_FOSB_f1_HOCOMOCO_v9__rc_shift5 (7381_FOSB_f1_HOCOMOCO_v9__rc) 0.792 0.427 3.681 0.232 0.877 1.475 0.895 35 36 32 31 24 36 33 32.429 36
; dyads_m3 versus 7381_FOSB_f1_HOCOMOCO_v9__rc; m=36/59; ncol2=9; w=7; offset=4; strand=R; shift=5; score=32.4286; -----MTGACTCA ; cor=0.792; Ncor=0.427; logoDP=3.681; NIcor=0.232; NsEucl=0.877; SSD=1.475; NSW=0.895; rcor=35; rNcor=36; rlogoDP=32; rNIcor=31; rNsEucl=24; rSSD=36; rNSW=33; rank_mean=32.429; match_rank=36 a 0 0 0 0 0 5 1 1 19 3 2 2 19 c 0 0 0 0 0 14 0 0 0 15 1 17 0 g 0 0 0 0 0 1 0 15 0 1 0 1 1 t 0 0 0 0 0 0 19 4 1 1 17 0 0

6152_1jnm_B_3D-footprint_20130124__rc_shift5 (6152_1jnm_B_3D-footprint_20130124__rc) 0.832 0.454 0.120 -0.095 0.872 1.188 0.901 22 23 55 47 34 22 28 33.000 37
; dyads_m3 versus 6152_1jnm_B_3D-footprint_20130124__rc; m=37/59; ncol2=6; w=6; offset=4; strand=R; shift=5; score= 33; -----rTGACs-- ; cor=0.832; Ncor=0.454; logoDP=0.120; NIcor=-0.095; NsEucl=0.872; SSD=1.188; NSW=0.901; rcor=22; rNcor=23; rlogoDP=55; rNIcor=47; rNsEucl=34; rSSD=22; rNSW=28; rank_mean=33.000; match_rank=37 a 0 0 0 0 0 48 0 0 96 0 12 0 0 c 0 0 0 0 0 12 0 0 0 96 24 0 0 g 0 0 0 0 0 24 0 96 0 0 48 0 0 t 0 0 0 0 0 12 96 0 0 0 12 0 0

7600_RARA_f1_HOCOMOCO_v9__rc_shift6 (7600_RARA_f1_HOCOMOCO_v9__rc) 0.836 0.456 1.930 -0.003 0.863 1.359 0.887 17 21 39 43 43 30 39 33.143 38
; dyads_m3 versus 7600_RARA_f1_HOCOMOCO_v9__rc; m=38/59; ncol2=6; w=6; offset=5; strand=R; shift=6; score=33.1429; ------TGACCT- ; cor=0.836; Ncor=0.456; logoDP=1.930; NIcor=-0.003; NsEucl=0.863; SSD=1.359; NSW=0.887; rcor=17; rNcor=21; rlogoDP=39; rNIcor=43; rNsEucl=43; rSSD=30; rNSW=39; rank_mean=33.143; match_rank=38 a 0 0 0 0 0 0 0 0 58 0 0 0 0 c 0 0 0 0 0 0 0 0 0 58 58 0 0 g 0 0 0 0 0 0 0 58 0 0 0 0 0 t 0 0 0 0 0 0 58 0 0 0 0 58 0

7373_ETS1_si_HOCOMOCO_v9__rc_shift0 (7373_ETS1_si_HOCOMOCO_v9__rc) 0.791 0.461 0.101 -0.162 0.884 1.321 0.906 36 19 56 59 17 28 23 34.000 39
; dyads_m3 versus 7373_ETS1_si_HOCOMOCO_v9__rc; m=39/59; ncol2=8; w=7; offset=-1; strand=R; shift=0; score= 34; acWTCCkg----- ; cor=0.791; Ncor=0.461; logoDP=0.101; NIcor=-0.162; NsEucl=0.884; SSD=1.321; NSW=0.906; rcor=36; rNcor=19; rlogoDP=56; rNIcor=59; rNsEucl=17; rSSD=28; rNSW=23; rank_mean=34.000; match_rank=39 a 87 5 38 0 0 0 4 1 0 0 0 0 0 c 7 98 5 0 146 147 5 34 0 0 0 0 0 g 32 10 3 0 1 0 57 90 0 0 0 0 0 t 21 34 101 147 0 0 81 22 0 0 0 0 0

2602_MA0364.1_JASPAR_CORE_2009__shift2 (2602_MA0364.1_JASPAR_CORE_2009_) 0.764 0.486 7.566 0.462 0.859 1.946 0.861 52 13 8 11 48 56 54 34.571 40
; dyads_m3 versus 2602_MA0364.1_JASPAR_CORE_2009_; m=40/59; ncol2=7; w=7; offset=1; strand=D; shift=2; score=34.5714; --CCCCTGa---- ; cor=0.764; Ncor=0.486; logoDP=7.566; NIcor=0.462; NsEucl=0.859; SSD=1.946; NSW=0.861; rcor=52; rNcor=13; rlogoDP=8; rNIcor=11; rNsEucl=48; rSSD=56; rNSW=54; rank_mean=34.571; match_rank=40 a 0 0 0 5 0 0 0 0 56 0 0 0 0 c 0 0 95 95 100 100 0 0 8 0 0 0 0 g 0 0 0 0 0 0 0 95 23 0 0 0 0 t 0 0 5 0 0 0 100 5 13 0 0 0 0

1715_MA0156.1_JASPAR_CORE_2009__rc_shift0 (1715_MA0156.1_JASPAR_CORE_2009__rc) 0.800 0.467 0.042 -0.156 0.881 1.376 0.902 32 18 59 58 20 34 26 35.286 41
; dyads_m3 versus 1715_MA0156.1_JASPAR_CORE_2009__rc; m=41/59; ncol2=8; w=7; offset=-1; strand=R; shift=0; score=35.2857; AyTTCCTG----- ; cor=0.800; Ncor=0.467; logoDP=0.042; NIcor=-0.156; NsEucl=0.881; SSD=1.376; NSW=0.902; rcor=32; rNcor=18; rlogoDP=59; rNIcor=58; rNsEucl=20; rSSD=34; rNSW=26; rank_mean=35.286; match_rank=41 a 13 0 1 0 0 0 0 1 0 0 0 0 0 c 0 6 0 0 13 13 1 1 0 0 0 0 0 g 0 0 0 0 0 0 3 9 0 0 0 0 0 t 0 7 12 13 0 0 9 2 0 0 0 0 0

7678_THA_f1_HOCOMOCO_v9__rc_shift5 (7678_THA_f1_HOCOMOCO_v9__rc) 0.805 0.434 0.279 -0.141 0.880 1.410 0.899 30 32 48 53 22 35 29 35.571 42
; dyads_m3 versus 7678_THA_f1_HOCOMOCO_v9__rc; m=42/59; ncol2=9; w=7; offset=4; strand=R; shift=5; score=35.5714; -----sTGACCTs ; cor=0.805; Ncor=0.434; logoDP=0.279; NIcor=-0.141; NsEucl=0.880; SSD=1.410; NSW=0.899; rcor=30; rNcor=32; rlogoDP=48; rNIcor=53; rNsEucl=22; rSSD=35; rNSW=29; rank_mean=35.571; match_rank=42 a 0 0 0 0 0 11 0 0 68 5 6 1 6 c 0 0 0 0 0 30 1 5 1 69 67 12 21 g 0 0 0 0 0 22 4 68 0 0 1 3 37 t 0 0 0 0 0 11 69 1 5 0 0 58 10

7372_ESR2_si_HOCOMOCO_v9__rc_shift5 (7372_ESR2_si_HOCOMOCO_v9__rc) 0.811 0.442 0.165 -0.151 0.864 1.333 0.889 26 27 51 56 42 29 37 38.286 43
; dyads_m3 versus 7372_ESR2_si_HOCOMOCO_v9__rc; m=43/59; ncol2=6; w=6; offset=4; strand=R; shift=5; score=38.2857; -----sTGACC-- ; cor=0.811; Ncor=0.442; logoDP=0.165; NIcor=-0.151; NsEucl=0.864; SSD=1.333; NSW=0.889; rcor=26; rNcor=27; rlogoDP=51; rNIcor=56; rNsEucl=42; rSSD=29; rNSW=37; rank_mean=38.286; match_rank=43 a 0 0 0 0 0 40 4 1 311 9 23 0 0 c 0 0 0 0 0 114 0 0 30 350 336 0 0 g 0 0 0 0 0 168 8 370 27 11 0 0 0 t 0 0 0 0 0 49 359 0 3 1 12 0 0

7564_PAX2_si_HOCOMOCO_v9__shift4 (7564_PAX2_si_HOCOMOCO_v9_) 0.789 0.430 5.884 0.438 0.846 1.699 0.858 37 34 23 17 56 46 55 38.286 44
; dyads_m3 versus 7564_PAX2_si_HOCOMOCO_v9_; m=44/59; ncol2=6; w=6; offset=3; strand=D; shift=4; score=38.2857; ----mrTGAC--- ; cor=0.789; Ncor=0.430; logoDP=5.884; NIcor=0.438; NsEucl=0.846; SSD=1.699; NSW=0.858; rcor=37; rNcor=34; rlogoDP=23; rNIcor=17; rNsEucl=56; rSSD=46; rNSW=55; rank_mean=38.286; match_rank=44 a 0 0 0 0 22 29 0 0 52 7 0 0 0 c 0 0 0 0 36 4 4 0 1 44 0 0 0 g 0 0 0 0 0 25 0 58 2 1 0 0 0 t 0 0 0 0 0 0 54 0 3 6 0 0 0

7487_MAFG_si_HOCOMOCO_v9__shift5 (7487_MAFG_si_HOCOMOCO_v9_) 0.769 0.419 7.319 0.429 0.848 1.653 0.862 50 44 10 18 53 43 51 38.429 45
; dyads_m3 versus 7487_MAFG_si_HOCOMOCO_v9_; m=45/59; ncol2=6; w=6; offset=4; strand=D; shift=5; score=38.4286; -----ATGACt-- ; cor=0.769; Ncor=0.419; logoDP=7.319; NIcor=0.429; NsEucl=0.848; SSD=1.653; NSW=0.862; rcor=50; rNcor=44; rlogoDP=10; rNIcor=18; rNsEucl=53; rSSD=43; rNSW=51; rank_mean=38.429; match_rank=45 a 0 0 0 0 0 51 0 0 67 0 11 0 0 c 0 0 0 0 0 3 0 0 0 63 5 0 0 g 0 0 0 0 0 12 0 67 0 0 15 0 0 t 0 0 0 0 0 1 67 0 0 4 36 0 0

2536_MA0271.1_JASPAR_CORE_2009__shift6 (2536_MA0271.1_JASPAR_CORE_2009_) 0.761 0.415 6.195 0.403 0.856 1.495 0.875 53 48 18 23 49 37 42 38.571 46
; dyads_m3 versus 2536_MA0271.1_JASPAR_CORE_2009_; m=46/59; ncol2=6; w=6; offset=5; strand=D; shift=6; score=38.5714; ------wGACkC- ; cor=0.761; Ncor=0.415; logoDP=6.195; NIcor=0.403; NsEucl=0.856; SSD=1.495; NSW=0.875; rcor=53; rNcor=48; rlogoDP=18; rNIcor=23; rNsEucl=49; rSSD=37; rNSW=42; rank_mean=38.571; match_rank=46 a 0 0 0 0 0 0 89 0 161 0 44 0 0 c 0 0 0 0 0 0 0 0 0 301 0 256 0 g 0 0 0 0 0 0 0 301 0 0 79 0 0 t 0 0 0 0 0 0 69 0 0 0 69 20 0

5997_1bc7_C_3D-footprint_20130124__rc_shift1 (5997_1bc7_C_3D-footprint_20130124__rc) 0.785 0.428 0.088 -0.137 0.867 1.274 0.894 41 35 58 52 38 27 34 40.714 47
; dyads_m3 versus 5997_1bc7_C_3D-footprint_20130124__rc; m=47/59; ncol2=6; w=6; offset=0; strand=R; shift=1; score=40.7143; -cATCCt------ ; cor=0.785; Ncor=0.428; logoDP=0.088; NIcor=-0.137; NsEucl=0.867; SSD=1.274; NSW=0.894; rcor=41; rNcor=35; rlogoDP=58; rNIcor=52; rNsEucl=38; rSSD=27; rNSW=34; rank_mean=40.714; match_rank=47 a 0 13 96 0 0 0 13 0 0 0 0 0 0 c 0 57 0 0 96 96 13 0 0 0 0 0 0 g 0 13 0 0 0 0 16 0 0 0 0 0 0 t 0 13 0 96 0 0 54 0 0 0 0 0 0

2763_PF0076.1_JASPAR_CORE_2009__rc_shift2 (2763_PF0076.1_JASPAR_CORE_2009__rc) 0.798 0.435 1.977 -0.012 0.849 1.642 0.863 33 31 38 45 51 41 49 41.143 48
; dyads_m3 versus 2763_PF0076.1_JASPAR_CORE_2009__rc; m=48/59; ncol2=6; w=6; offset=1; strand=R; shift=2; score=41.1429; --TACCTG----- ; cor=0.798; Ncor=0.435; logoDP=1.977; NIcor=-0.012; NsEucl=0.849; SSD=1.642; NSW=0.863; rcor=33; rNcor=31; rlogoDP=38; rNIcor=45; rNsEucl=51; rSSD=41; rNSW=49; rank_mean=41.143; match_rank=48 a 0 0 0 2472 0 0 0 0 0 0 0 0 0 c 0 0 0 0 2472 2472 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 2472 0 0 0 0 0 t 0 0 2472 0 0 0 2472 0 0 0 0 0 0

7625_SNAI1_f1_HOCOMOCO_v9__rc_shift1 (7625_SNAI1_f1_HOCOMOCO_v9__rc) 0.781 0.497 0.095 -0.107 0.865 1.777 0.873 44 8 57 49 41 53 46 42.571 49
; dyads_m3 versus 7625_SNAI1_f1_HOCOMOCO_v9__rc; m=49/59; ncol2=7; w=7; offset=0; strand=R; shift=1; score=42.5714; -cCACCTG----- ; cor=0.781; Ncor=0.497; logoDP=0.095; NIcor=-0.107; NsEucl=0.865; SSD=1.777; NSW=0.873; rcor=44; rNcor=8; rlogoDP=57; rNIcor=49; rNsEucl=41; rSSD=53; rNSW=46; rank_mean=42.571; match_rank=49 a 0 1 0 5 0 0 0 0 0 0 0 0 0 c 0 2 5 0 5 5 0 0 0 0 0 0 0 g 0 1 0 0 0 0 0 5 0 0 0 0 0 t 0 1 0 0 0 0 5 0 0 0 0 0 0

4940_Hr46_DrosophilaTF_1.1__rc_shift6 (4940_Hr46_DrosophilaTF_1.1__rc) 0.794 0.433 1.930 -0.003 0.848 1.666 0.861 34 33 39 43 54 44 52 42.714 50
; dyads_m3 versus 4940_Hr46_DrosophilaTF_1.1__rc; m=50/59; ncol2=6; w=6; offset=5; strand=R; shift=6; score=42.7143; ------TGACCC- ; cor=0.794; Ncor=0.433; logoDP=1.930; NIcor=-0.003; NsEucl=0.848; SSD=1.666; NSW=0.861; rcor=34; rNcor=33; rlogoDP=39; rNIcor=43; rNsEucl=54; rSSD=44; rNSW=52; rank_mean=42.714; match_rank=50 a 0 0 0 0 0 0 0 0 1 0 0 0 0 c 0 0 0 0 0 0 0 0 0 1 1 1 0 g 0 0 0 0 0 0 0 1 0 0 0 0 0 t 0 0 0 0 0 0 1 0 0 0 0 0 0

7472_JUNB_f1_HOCOMOCO_v9__rc_shift5 (7472_JUNB_f1_HOCOMOCO_v9__rc) 0.757 0.408 3.525 0.231 0.866 1.754 0.875 54 54 35 32 39 48 43 43.571 51
; dyads_m3 versus 7472_JUNB_f1_HOCOMOCO_v9__rc; m=51/59; ncol2=9; w=7; offset=4; strand=R; shift=5; score=43.5714; -----mTGACTCA ; cor=0.757; Ncor=0.408; logoDP=3.525; NIcor=0.231; NsEucl=0.866; SSD=1.754; NSW=0.875; rcor=54; rNcor=54; rlogoDP=35; rNIcor=32; rNsEucl=39; rSSD=48; rNSW=43; rank_mean=43.571; match_rank=51 a 0 0 0 0 0 23 0 1 56 9 7 8 57 c 0 0 0 0 0 20 0 1 2 49 1 49 0 g 0 0 0 0 0 11 0 54 0 0 2 1 1 t 0 0 0 0 0 5 59 3 1 1 49 1 1

2699_PF0012.1_JASPAR_CORE_2009__rc_shift2 (2699_PF0012.1_JASPAR_CORE_2009__rc) 0.782 0.427 3.898 0.128 0.844 1.757 0.854 42 37 30 36 58 50 57 44.286 52
; dyads_m3 versus 2699_PF0012.1_JASPAR_CORE_2009__rc; m=52/59; ncol2=6; w=6; offset=1; strand=R; shift=2; score=44.2857; --CACCTG----- ; cor=0.782; Ncor=0.427; logoDP=3.898; NIcor=0.128; NsEucl=0.844; SSD=1.757; NSW=0.854; rcor=42; rNcor=37; rlogoDP=30; rNIcor=36; rNsEucl=58; rSSD=50; rNSW=57; rank_mean=44.286; match_rank=52 a 0 0 0 12312 0 0 0 0 0 0 0 0 0 c 0 0 12312 0 12312 12312 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 12312 0 0 0 0 0 t 0 0 0 0 0 0 12312 0 0 0 0 0 0

7626_SNAI2_f1_HOCOMOCO_v9__rc_shift2 (7626_SNAI2_f1_HOCOMOCO_v9__rc) 0.782 0.427 3.898 0.128 0.844 1.757 0.854 42 37 30 36 58 50 57 44.286 53
; dyads_m3 versus 7626_SNAI2_f1_HOCOMOCO_v9__rc; m=53/59; ncol2=6; w=6; offset=1; strand=R; shift=2; score=44.2857; --CACCTG----- ; cor=0.782; Ncor=0.427; logoDP=3.898; NIcor=0.128; NsEucl=0.844; SSD=1.757; NSW=0.854; rcor=42; rNcor=37; rlogoDP=30; rNIcor=36; rNsEucl=58; rSSD=50; rNSW=57; rank_mean=44.286; match_rank=53 a 0 0 0 6 0 0 0 0 0 0 0 0 0 c 0 0 6 0 6 6 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 6 0 0 0 0 0 t 0 0 0 0 0 0 6 0 0 0 0 0 0

2476_MA0086.1_JASPAR_CORE_2009__rc_shift2 (2476_MA0086.1_JASPAR_CORE_2009__rc) 0.775 0.423 3.538 0.138 0.848 1.668 0.861 48 42 34 34 55 45 53 44.429 54
; dyads_m3 versus 2476_MA0086.1_JASPAR_CORE_2009__rc; m=54/59; ncol2=6; w=6; offset=1; strand=R; shift=2; score=44.4286; --CACCTG----- ; cor=0.775; Ncor=0.423; logoDP=3.538; NIcor=0.138; NsEucl=0.848; SSD=1.668; NSW=0.861; rcor=48; rNcor=42; rlogoDP=34; rNIcor=34; rNsEucl=55; rSSD=45; rNSW=53; rank_mean=44.429; match_rank=54 a 0 0 2 40 0 0 1 0 0 0 0 0 0 c 0 0 38 0 38 37 0 1 0 0 0 0 0 g 0 0 0 0 0 0 0 39 0 0 0 0 0 t 0 0 0 0 2 3 39 0 0 0 0 0 0

7552_NR4A3_f1_HOCOMOCO_v9__rc_shift5 (7552_NR4A3_f1_HOCOMOCO_v9__rc) 0.789 0.425 0.250 -0.149 0.866 1.759 0.874 38 39 49 55 40 52 44 45.286 55
; dyads_m3 versus 7552_NR4A3_f1_HOCOMOCO_v9__rc; m=55/59; ncol2=9; w=7; offset=4; strand=R; shift=5; score=45.2857; -----sTGACCTT ; cor=0.789; Ncor=0.425; logoDP=0.250; NIcor=-0.149; NsEucl=0.866; SSD=1.759; NSW=0.874; rcor=38; rNcor=39; rlogoDP=49; rNIcor=55; rNsEucl=40; rSSD=52; rNSW=44; rank_mean=45.286; match_rank=55 a 0 0 0 0 0 0 0 0 5 0 0 0 0 c 0 0 0 0 0 3 0 1 0 5 5 0 0 g 0 0 0 0 0 2 0 4 0 0 0 0 0 t 0 0 0 0 0 0 5 0 0 0 0 5 5

5598_NR2F1_full_HumanTF_1.0__rc_shift5 (5598_NR2F1_full_HumanTF_1.0__rc) 0.753 0.439 1.855 -0.012 0.861 1.880 0.866 57 29 42 46 46 54 47 45.857 56
; dyads_m3 versus 5598_NR2F1_full_HumanTF_1.0__rc; m=56/59; ncol2=8; w=7; offset=4; strand=R; shift=5; score=45.8571; -----tTGACCyc ; cor=0.753; Ncor=0.439; logoDP=1.855; NIcor=-0.012; NsEucl=0.861; SSD=1.880; NSW=0.866; rcor=57; rNcor=29; rlogoDP=42; rNIcor=46; rNsEucl=46; rSSD=54; rNSW=47; rank_mean=45.857; match_rank=56 a 0 0 0 0 0 232 0 29 1196 1 11 8 121 c 0 0 0 0 0 249 56 4 19 1196 1196 649 840 g 0 0 0 0 0 207 0 1196 0 0 3 0 105 t 0 0 0 0 0 507 1196 0 0 2 0 546 355

7700_ZEB1_do_HOCOMOCO_v9__rc_shift2 (7700_ZEB1_do_HOCOMOCO_v9__rc) 0.753 0.411 2.916 0.131 0.849 1.643 0.863 56 52 36 35 52 42 50 46.143 57
; dyads_m3 versus 7700_ZEB1_do_HOCOMOCO_v9__rc; m=57/59; ncol2=6; w=6; offset=1; strand=R; shift=2; score=46.1429; --CACCTg----- ; cor=0.753; Ncor=0.411; logoDP=2.916; NIcor=0.131; NsEucl=0.849; SSD=1.643; NSW=0.863; rcor=56; rNcor=52; rlogoDP=36; rNIcor=35; rNsEucl=52; rSSD=42; rNSW=50; rank_mean=46.143; match_rank=57 a 0 0 1 125 0 2 0 16 0 0 0 0 0 c 0 0 107 0 126 121 0 7 0 0 0 0 0 g 0 0 1 0 0 4 1 78 0 0 0 0 0 t 0 0 18 2 1 0 126 26 0 0 0 0 0

7471_ITF2_f1_HOCOMOCO_v9__rc_shift0 (7471_ITF2_f1_HOCOMOCO_v9__rc) 0.751 0.438 0.386 -0.132 0.854 2.103 0.850 59 30 46 51 50 59 59 50.571 58
; dyads_m3 versus 7471_ITF2_f1_HOCOMOCO_v9__rc; m=58/59; ncol2=8; w=7; offset=-1; strand=R; shift=0; score=50.5714; yrCACCTG----- ; cor=0.751; Ncor=0.438; logoDP=0.386; NIcor=-0.132; NsEucl=0.854; SSD=2.103; NSW=0.850; rcor=59; rNcor=30; rlogoDP=46; rNIcor=51; rNsEucl=50; rSSD=59; rNSW=59; rank_mean=50.571; match_rank=58 a 91 143 0 453 0 0 0 0 0 0 0 0 0 c 157 1 454 1 454 454 0 0 0 0 0 0 0 g 37 299 0 0 0 0 0 454 0 0 0 0 0 t 169 11 0 0 0 0 454 0 0 0 0 0 0

6324_1t2k_D_3D-footprint_20130124__rc_shift5 (6324_1t2k_D_3D-footprint_20130124__rc) 0.751 0.410 0.128 -0.147 0.845 1.720 0.857 58 53 54 54 57 47 56 54.143 59
; dyads_m3 versus 6324_1t2k_D_3D-footprint_20130124__rc; m=59/59; ncol2=6; w=6; offset=4; strand=R; shift=5; score=54.1429; -----TTGACA-- ; cor=0.751; Ncor=0.410; logoDP=0.128; NIcor=-0.147; NsEucl=0.845; SSD=1.720; NSW=0.857; rcor=58; rNcor=53; rlogoDP=54; rNIcor=54; rNsEucl=57; rSSD=47; rNSW=56; rank_mean=54.143; match_rank=59 a 0 0 0 0 0 9 0 9 96 0 67 0 0 c 0 0 0 0 0 9 0 9 0 96 9 0 0 g 0 0 0 0 0 11 0 67 0 0 9 0 0 t 0 0 0 0 0 67 96 11 0 0 11 0 0