One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_footprintDB

One-to-n matrix alignment; reference matrix: positions_6nt_m1_shift7 ; 52 matrices ; sort_field=rank_mean

Matrix nameAligned logoscor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
positions_6nt_m1_shift7 (positions_6nt_m1)                                 
; positions_6nt_m1; m=0 (reference); ncol1=10; shift=7; ncol=17; -------rkATCAAAsd
; Alignment reference
a	0	0	0	0	0	0	0	8	0	12	0	0	12	12	12	0	4
c	0	0	0	0	0	0	0	1	0	0	0	12	0	0	0	3	0
g	0	0	0	0	0	0	0	3	4	0	0	0	0	0	0	7	3
t	0	0	0	0	0	0	0	0	8	0	12	0	0	0	0	2	5
6733_4euw_A_3D-footprint_20130124__shift10 (6733_4euw_A_3D-footprint_20130124_) 0.970 0.582 7.317 0.573 0.941 0.253 0.979 2 10 12 6 1 1 1 4.714 1 
; positions_6nt_m1 versus 6733_4euw_A_3D-footprint_20130124_; m=1/51; ncol2=6; w=6; offset=3; strand=D; shift=10; score= 4.7143; ----------TcAAAg-
; cor=0.970; Ncor=0.582; logoDP=7.317; NIcor=0.573; NsEucl=0.941; SSD=0.253; NSW=0.979; rcor=2; rNcor=10; rlogoDP=12; rNIcor=6; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=4.714; match_rank=1
a	0	0	0	0	0	0	0	0	0	0	0	12	96	84	96	12	0
c	0	0	0	0	0	0	0	0	0	0	0	60	0	0	0	12	0
g	0	0	0	0	0	0	0	0	0	0	0	12	0	12	0	60	0
t	0	0	0	0	0	0	0	0	0	0	96	12	0	0	0	12	0
1939_PB0082.1_JASPAR_CORE_2009__shift4 (1939_PB0082.1_JASPAR_CORE_2009_) 0.894 0.526 8.400 0.545 0.927 1.074 0.946 12 18 8 8 3 17 4 10.000 2 
; positions_6nt_m1 versus 1939_PB0082.1_JASPAR_CORE_2009_; m=2/51; ncol2=17; w=10; offset=-3; strand=D; shift=4; score=     10; ----twwasATCAAAGg
; cor=0.894; Ncor=0.526; logoDP=8.400; NIcor=0.545; NsEucl=0.927; SSD=1.074; NSW=0.946; rcor=12; rNcor=18; rlogoDP=8; rNIcor=8; rNsEucl=3; rSSD=17; rNSW=4; rank_mean=10.000; match_rank=2
a	0	0	0	0	19	37	25	58	4	76	6	4	96	97	94	13	21
c	0	0	0	0	20	23	17	4	40	1	1	87	0	0	0	6	17
g	0	0	0	0	18	12	13	13	50	1	0	6	0	1	2	80	48
t	0	0	0	0	43	27	45	24	7	23	93	3	3	1	4	2	13
3755_UP00058_UniPROBE_20120919__shift4 (3755_UP00058_UniPROBE_20120919_) 0.893 0.525 8.396 0.544 0.926 1.087 0.946 14 19 9 9 6 19 6 11.714 3 
; positions_6nt_m1 versus 3755_UP00058_UniPROBE_20120919_; m=3/51; ncol2=17; w=10; offset=-3; strand=D; shift=4; score=11.7143; ----twwwsATCAAAGg
; cor=0.893; Ncor=0.525; logoDP=8.396; NIcor=0.544; NsEucl=0.926; SSD=1.087; NSW=0.946; rcor=14; rNcor=19; rlogoDP=9; rNIcor=9; rNsEucl=6; rSSD=19; rNSW=6; rank_mean=11.714; match_rank=3
a	0	0	0	0	19	37	25	58	4	75	0.06	4	0.96	0.97	0.94	12	21
c	0	0	0	0	20	23	17	4	40	1	0.01	87	0	0	0	6	17
g	0	0	0	0	18	13	13	13	49	1	0	6	0	0.01	0.02	80	49
t	0	0	0	0	43	27	45	25	7	23	0.93	3	0.03	0.01	0.04	2	13
5900_Tcf7_DBD_HumanTF_1.0__shift5 (5900_Tcf7_DBD_HumanTF_1.0_) 0.885 0.737 10.861 0.744 0.919 1.320 0.934 19 4 2 2 13 32 19 13.000 4 
; positions_6nt_m1 versus 5900_Tcf7_DBD_HumanTF_1.0_; m=4/51; ncol2=12; w=10; offset=-2; strand=D; shift=5; score=     13; -----aAASATCAAAGg
; cor=0.885; Ncor=0.737; logoDP=10.861; NIcor=0.744; NsEucl=0.919; SSD=1.320; NSW=0.934; rcor=19; rNcor=4; rlogoDP=2; rNIcor=2; rNsEucl=13; rSSD=32; rNSW=19; rank_mean=13.000; match_rank=4
a	0	0	0	0	0	552	791	906	5	912	0	21	919	921	915	32	159
c	0	0	0	0	0	68	31	4	277	2	5	1018	0	6	0	0	146
g	0	0	0	0	0	117	144	27	744	4	18	28	5	10	0	846	600
t	0	0	0	0	0	97	111	31	6	42	874	21	6	3	4	0	89
5494_LEF1_DBD_HumanTF_1.0__shift5 (5494_LEF1_DBD_HumanTF_1.0_) 0.885 0.590 11.169 0.590 0.918 1.343 0.933 18 8 1 5 14 34 20 14.286 5 
; positions_6nt_m1 versus 5494_LEF1_DBD_HumanTF_1.0_; m=5/51; ncol2=15; w=10; offset=-2; strand=D; shift=5; score=14.2857; -----aAAGATCAAAGg
; cor=0.885; Ncor=0.590; logoDP=11.169; NIcor=0.590; NsEucl=0.918; SSD=1.343; NSW=0.933; rcor=18; rNcor=8; rlogoDP=1; rNIcor=5; rNsEucl=14; rSSD=34; rNSW=20; rank_mean=14.286; match_rank=5
a	0	0	0	0	0	601	655	697	5	699	9	14	711	709	712	33	197
c	0	0	0	0	0	139	26	7	242	0	3	935	0	0	0	24	184
g	0	0	0	0	0	215	207	34	1053	4	0	49	0	4	13	1068	851
t	0	0	0	0	0	138	63	14	3	15	898	5	4	0	4	0	124
7669_TF7L2_f1_HOCOMOCO_v9__shift7 (7669_TF7L2_f1_HOCOMOCO_v9_) 0.868 0.789 7.297 0.802 0.919 1.318 0.934 25 1 13 1 12 31 18 14.429 6 
; positions_6nt_m1 versus 7669_TF7L2_f1_HOCOMOCO_v9_; m=6/51; ncol2=11; w=10; offset=0; strand=D; shift=7; score=14.4286; -------aswTCAAAGg
; cor=0.868; Ncor=0.789; logoDP=7.297; NIcor=0.802; NsEucl=0.919; SSD=1.318; NSW=0.934; rcor=25; rNcor=1; rlogoDP=13; rNIcor=1; rNsEucl=12; rSSD=31; rNSW=18; rank_mean=14.429; match_rank=6
a	0	0	0	0	0	0	0	727	128	854	206	98	1270	1244	1178	60	317
c	0	0	0	0	0	0	0	153	510	38	23	1047	7	18	0	27	314
g	0	0	0	0	0	0	0	286	557	12	80	124	0	17	58	1187	549
t	0	0	0	0	0	0	0	114	85	376	971	11	3	1	44	6	100
5863_TCF7L1_full_HumanTF_1.0__shift5 (5863_TCF7L1_full_HumanTF_1.0_) 0.876 0.730 10.106 0.717 0.917 1.394 0.930 23 5 4 3 16 35 21 15.286 7 
; positions_6nt_m1 versus 5863_TCF7L1_full_HumanTF_1.0_; m=7/51; ncol2=12; w=10; offset=-2; strand=D; shift=5; score=15.2857; -----AAAGATCAAAGG
; cor=0.876; Ncor=0.730; logoDP=10.106; NIcor=0.717; NsEucl=0.917; SSD=1.394; NSW=0.930; rcor=23; rNcor=5; rlogoDP=4; rNIcor=3; rNsEucl=16; rSSD=35; rNSW=21; rank_mean=15.286; match_rank=7
a	0	0	0	0	0	109	159	159	0	159	0	5	159	159	159	0	28
c	0	0	0	0	0	20	7	0	33	9	6	159	2	0	0	9	9
g	0	0	0	0	0	6	30	0	126	13	9	0	1	0	2	159	113
t	0	0	0	0	0	24	7	5	6	18	159	0	0	0	0	5	9
3751_UP00054_UniPROBE_20120919__shift4 (3751_UP00054_UniPROBE_20120919_) 0.883 0.520 7.753 0.540 0.923 1.175 0.941 20 22 10 11 10 24 13 15.714 8 
; positions_6nt_m1 versus 3751_UP00054_UniPROBE_20120919_; m=8/51; ncol2=17; w=10; offset=-3; strand=D; shift=4; score=15.7143; ----twwasWTCAAAGg
; cor=0.883; Ncor=0.520; logoDP=7.753; NIcor=0.540; NsEucl=0.923; SSD=1.175; NSW=0.941; rcor=20; rNcor=22; rlogoDP=10; rNIcor=11; rNsEucl=10; rSSD=24; rNSW=13; rank_mean=15.714; match_rank=8
a	0	0	0	0	17	34	30	60	4	72	0.07	4	96	0.96	93	16	23
c	0	0	0	0	20	23	17	5	38	1	0.01	82	1	0	1	6	15
g	0	0	0	0	22	14	14	14	53	1	0	10	0	0.02	2	76	53
t	0	0	0	0	41	29	39	21	5	26	0.92	4	3	0.02	4	2	9
1940_PB0083.1_JASPAR_CORE_2009__shift4 (1940_PB0083.1_JASPAR_CORE_2009_) 0.883 0.520 7.643 0.540 0.923 1.175 0.941 21 23 11 10 11 25 14 16.429 9 
; positions_6nt_m1 versus 1940_PB0083.1_JASPAR_CORE_2009_; m=9/51; ncol2=17; w=10; offset=-3; strand=D; shift=4; score=16.4286; ----twwasWTCAAAGg
; cor=0.883; Ncor=0.520; logoDP=7.643; NIcor=0.540; NsEucl=0.923; SSD=1.175; NSW=0.941; rcor=21; rNcor=23; rlogoDP=11; rNIcor=10; rNsEucl=11; rSSD=25; rNSW=14; rank_mean=16.429; match_rank=9
a	0	0	0	0	17	34	30	60	4	73	7	5	96	96	94	16	23
c	0	0	0	0	20	23	17	5	38	1	1	82	1	0	1	6	15
g	0	0	0	0	22	14	14	13	53	1	0	10	1	2	2	76	52
t	0	0	0	0	41	29	38	21	5	26	92	4	3	2	4	2	9
1795_MA0237.1_JASPAR_CORE_2009__rc_shift8 (1795_MA0237.1_JASPAR_CORE_2009__rc) 0.930 0.744 2.118 0.115 0.917 0.872 0.945 4 3 41 32 15 13 7 16.429 10 
; positions_6nt_m1 versus 1795_MA0237.1_JASPAR_CORE_2009__rc; m=10/51; ncol2=8; w=8; offset=1; strand=R; shift=8; score=16.4286; --------kWTCAAAr-
; cor=0.930; Ncor=0.744; logoDP=2.118; NIcor=0.115; NsEucl=0.917; SSD=0.872; NSW=0.945; rcor=4; rNcor=3; rlogoDP=41; rNIcor=32; rNsEucl=15; rSSD=13; rNSW=7; rank_mean=16.429; match_rank=10
a	0	0	0	0	0	0	0	0	4	17	3	3	23	22	20	8	0
c	0	0	0	0	0	0	0	0	3	0	5	20	0	1	0	3	0
g	0	0	0	0	0	0	0	0	11	0	0	2	0	0	3	10	0
t	0	0	0	0	0	0	0	0	7	8	17	0	2	2	2	4	0
1804_MA0246.1_JASPAR_CORE_2009__rc_shift7 (1804_MA0246.1_JASPAR_CORE_2009__rc) 0.910 0.546 3.914 0.146 0.902 0.694 0.942 6 13 32 30 18 7 12 16.857 11 
; positions_6nt_m1 versus 1804_MA0246.1_JASPAR_CORE_2009__rc; m=11/51; ncol2=6; w=6; offset=0; strand=R; shift=7; score=16.8571; -------GTATCA----
; cor=0.910; Ncor=0.546; logoDP=3.914; NIcor=0.146; NsEucl=0.902; SSD=0.694; NSW=0.942; rcor=6; rNcor=13; rlogoDP=32; rNIcor=30; rNsEucl=18; rSSD=7; rNSW=12; rank_mean=16.857; match_rank=11
a	0	0	0	0	0	0	0	3	0	26	0	0	26	0	0	0	0
c	0	0	0	0	0	0	0	0	0	1	0	27	1	0	0	0	0
g	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0
t	0	0	0	0	0	0	0	0	27	0	27	0	0	0	0	0	0
2760_PF0073.1_JASPAR_CORE_2009__rc_shift10 (2760_PF0073.1_JASPAR_CORE_2009__rc) 0.971 0.583 0.000 -0.189 0.939 0.264 0.978 1 9 51 51 2 2 2 16.857 12 
; positions_6nt_m1 versus 2760_PF0073.1_JASPAR_CORE_2009__rc; m=12/51; ncol2=6; w=6; offset=3; strand=R; shift=10; score=16.8571; ----------TCAAAG-
; cor=0.971; Ncor=0.583; logoDP=0.000; NIcor=-0.189; NsEucl=0.939; SSD=0.264; NSW=0.978; rcor=1; rNcor=9; rlogoDP=51; rNIcor=51; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=16.857; match_rank=12
a	0	0	0	0	0	0	0	0	0	0	0	0	4260	4260	4260	0	0
c	0	0	0	0	0	0	0	0	0	0	0	4260	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4260	0
t	0	0	0	0	0	0	0	0	0	0	4260	0	0	0	0	0	0
2526_MA0151.1_JASPAR_CORE_2009__shift9 (2526_MA0151.1_JASPAR_CORE_2009_) 0.887 0.532 8.694 0.516 0.885 0.960 0.920 17 15 6 13 30 15 26 17.429 13 
; positions_6nt_m1 versus 2526_MA0151.1_JASPAR_CORE_2009_; m=13/51; ncol2=6; w=6; offset=2; strand=D; shift=9; score=17.4286; ---------ATyAAA--
; cor=0.887; Ncor=0.532; logoDP=8.694; NIcor=0.516; NsEucl=0.885; SSD=0.960; NSW=0.920; rcor=17; rNcor=15; rlogoDP=6; rNIcor=13; rNsEucl=30; rSSD=15; rNSW=26; rank_mean=17.429; match_rank=13
a	0	0	0	0	0	0	0	0	0	27	0	1	27	27	20	0	0
c	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
t	0	0	0	0	0	0	0	0	0	0	27	17	0	0	6	0	0
3780_UP00083_UniPROBE_20120919__rc_shift4 (3780_UP00083_UniPROBE_20120919__rc) 0.896 0.527 3.381 0.051 0.927 1.078 0.946 9 16 36 36 5 18 5 17.857 14 
; positions_6nt_m1 versus 3780_UP00083_UniPROBE_20120919__rc; m=14/51; ncol2=17; w=10; offset=-3; strand=R; shift=4; score=17.8571; ----tawasATCAAAGg
; cor=0.896; Ncor=0.527; logoDP=3.381; NIcor=0.051; NsEucl=0.927; SSD=1.078; NSW=0.946; rcor=9; rNcor=16; rlogoDP=36; rNIcor=36; rNsEucl=5; rSSD=18; rNSW=5; rank_mean=17.857; match_rank=14
a	0	0	0	0	17	39	25	59	4	0.89	0.05	3	0.97	0.98	0.96	7	20
c	0	0	0	0	23	24	22	4	35	0	0	93	0	0	0	3	18
g	0	0	0	0	24	14	17	15	57	0	0	3	0	0.01	0.02	88	53
t	0	0	0	0	36	23	36	22	4	0.11	0.95	1	0.03	0.01	0.02	2	9
1758_MA0199.1_JASPAR_CORE_2009__rc_shift8 (1758_MA0199.1_JASPAR_CORE_2009__rc) 0.960 0.480 2.009 0.036 0.927 0.269 0.973 3 32 42 40 4 3 3 18.143 15 
; positions_6nt_m1 versus 1758_MA0199.1_JASPAR_CORE_2009__rc; m=15/51; ncol2=5; w=5; offset=1; strand=R; shift=8; score=18.1429; --------TATCA----
; cor=0.960; Ncor=0.480; logoDP=2.009; NIcor=0.036; NsEucl=0.927; SSD=0.269; NSW=0.973; rcor=3; rNcor=32; rlogoDP=42; rNIcor=40; rNsEucl=4; rSSD=3; rNSW=3; rank_mean=18.143; match_rank=15
a	0	0	0	0	0	0	0	0	0	27	0	0	22	0	0	0	0
c	0	0	0	0	0	0	0	0	1	0	0	27	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0
t	0	0	0	0	0	0	0	0	26	0	27	0	0	0	0	0	0
2684_PB0084.1_JASPAR_CORE_2009__rc_shift4 (2684_PB0084.1_JASPAR_CORE_2009__rc) 0.895 0.526 3.370 0.051 0.926 1.092 0.945 10 17 37 35 7 20 8 19.143 16 
; positions_6nt_m1 versus 2684_PB0084.1_JASPAR_CORE_2009__rc; m=16/51; ncol2=17; w=10; offset=-3; strand=R; shift=4; score=19.1429; ----tawasATCAAAGg
; cor=0.895; Ncor=0.526; logoDP=3.370; NIcor=0.051; NsEucl=0.926; SSD=1.092; NSW=0.945; rcor=10; rNcor=17; rlogoDP=37; rNIcor=35; rNsEucl=7; rSSD=20; rNSW=8; rank_mean=19.143; match_rank=16
a	0	0	0	0	17	39	25	59	3	89	5	3	97	98	96	7	20
c	0	0	0	0	23	23	22	4	35	0	0	93	0	0	0	3	18
g	0	0	0	0	24	14	17	14	57	0	0	3	0	1	2	88	53
t	0	0	0	0	35	23	36	22	4	11	95	1	3	1	2	1	9
6289_1qrv_A_3D-footprint_20130124__shift6 (6289_1qrv_A_3D-footprint_20130124_) 0.897 0.408 5.451 0.403 0.893 0.569 0.943 8 47 22 24 23 4 9 19.571 17 
; positions_6nt_m1 versus 6289_1qrv_A_3D-footprint_20130124_; m=17/51; ncol2=6; w=5; offset=-1; strand=D; shift=6; score=19.5714; ------gnTATC-----
; cor=0.897; Ncor=0.408; logoDP=5.451; NIcor=0.403; NsEucl=0.893; SSD=0.569; NSW=0.943; rcor=8; rNcor=47; rlogoDP=22; rNIcor=24; rNsEucl=23; rSSD=4; rNSW=9; rank_mean=19.571; match_rank=17
a	0	0	0	0	0	0	20	24	0	96	0	0	0	0	0	0	0
c	0	0	0	0	0	0	19	24	0	0	0	76	0	0	0	0	0
g	0	0	0	0	0	0	38	24	0	0	0	1	0	0	0	0	0
t	0	0	0	0	0	0	19	24	96	0	96	19	0	0	0	0	0
2415_MA0021.1_JASPAR_CORE_2009__shift12 (2415_MA0021.1_JASPAR_CORE_2009_) 0.897 0.408 6.134 0.421 0.889 0.615 0.939 7 46 16 23 26 5 16 19.857 18 
; positions_6nt_m1 versus 2415_MA0021.1_JASPAR_CORE_2009_; m=18/51; ncol2=6; w=5; offset=5; strand=D; shift=12; score=19.8571; ------------AAAGy
; cor=0.897; Ncor=0.408; logoDP=6.134; NIcor=0.421; NsEucl=0.889; SSD=0.615; NSW=0.939; rcor=7; rNcor=46; rlogoDP=16; rNIcor=23; rNsEucl=26; rSSD=5; rNSW=16; rank_mean=19.857; match_rank=18
a	0	0	0	0	0	0	0	0	0	0	0	0	21	21	21	0	0
c	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	3
t	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8
7482_LEF1_f1_HOCOMOCO_v9__rc_shift9 (7482_LEF1_f1_HOCOMOCO_v9__rc) 0.917 0.550 2.545 0.030 0.900 0.726 0.939 5 12 40 41 19 9 15 20.143 19 
; positions_6nt_m1 versus 7482_LEF1_f1_HOCOMOCO_v9__rc; m=19/51; ncol2=6; w=6; offset=2; strand=R; shift=9; score=20.1429; ---------wwCAAA--
; cor=0.917; Ncor=0.550; logoDP=2.545; NIcor=0.030; NsEucl=0.900; SSD=0.726; NSW=0.939; rcor=5; rNcor=12; rlogoDP=40; rNIcor=41; rNsEucl=19; rSSD=9; rNSW=15; rank_mean=20.143; match_rank=19
a	0	0	0	0	0	0	0	0	0	38	28	0	67	67	65	0	0
c	0	0	0	0	0	0	0	0	0	3	0	67	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	2	4	0	0	0	1	0	0
t	0	0	0	0	0	0	0	0	0	24	35	0	0	0	1	0	0
7627_SOX10_si_HOCOMOCO_v9__shift11 (7627_SOX10_si_HOCOMOCO_v9_) 0.863 0.518 5.805 0.510 0.891 0.858 0.929 26 25 20 14 25 12 23 20.714 20 
; positions_6nt_m1 versus 7627_SOX10_si_HOCOMOCO_v9_; m=20/51; ncol2=6; w=6; offset=4; strand=D; shift=11; score=20.7143; -----------CAAwGr
; cor=0.863; Ncor=0.518; logoDP=5.805; NIcor=0.510; NsEucl=0.891; SSD=0.858; NSW=0.929; rcor=26; rNcor=25; rlogoDP=20; rNIcor=14; rNsEucl=25; rSSD=12; rNSW=23; rank_mean=20.714; match_rank=20
a	0	0	0	0	0	0	0	0	0	0	0	0	32	31	15	2	13
c	0	0	0	0	0	0	0	0	0	0	0	31	0	0	0	0	7
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	29	10
t	0	0	0	0	0	0	0	0	0	0	0	1	0	1	14	1	2
3764_UP00067_UniPROBE_20120919__rc_shift4 (3764_UP00067_UniPROBE_20120919__rc) 0.891 0.524 3.477 0.048 0.924 1.154 0.942 15 20 35 37 8 22 10 21.000 21 
; positions_6nt_m1 versus 3764_UP00067_UniPROBE_20120919__rc; m=21/51; ncol2=17; w=10; offset=-3; strand=R; shift=4; score=     21; ----kwwasATCAAAGg
; cor=0.891; Ncor=0.524; logoDP=3.477; NIcor=0.048; NsEucl=0.924; SSD=1.154; NSW=0.942; rcor=15; rNcor=20; rlogoDP=35; rNIcor=37; rNsEucl=8; rSSD=22; rNSW=10; rank_mean=21.000; match_rank=21
a	0	0	0	0	19	40	26	62	2	0.92	0.03	2	0.97	0.99	0.97	5	17
c	0	0	0	0	22	17	22	6	28	0	0	95	0	0	0	4	14
g	0	0	0	0	34	15	17	12	67	0	0	3	0	0.01	0.02	90	62
t	0	0	0	0	25	28	35	20	3	0.08	0.97	0	0.02	0.01	0.02	1	7
1904_PB0040.1_JASPAR_CORE_2009__rc_shift4 (1904_PB0040.1_JASPAR_CORE_2009__rc) 0.891 0.524 3.492 0.046 0.924 1.157 0.942 16 21 34 38 9 23 11 21.714 22 
; positions_6nt_m1 versus 1904_PB0040.1_JASPAR_CORE_2009__rc; m=22/51; ncol2=17; w=10; offset=-3; strand=R; shift=4; score=21.7143; ----kwwasATCAAAGg
; cor=0.891; Ncor=0.524; logoDP=3.492; NIcor=0.046; NsEucl=0.924; SSD=1.157; NSW=0.942; rcor=16; rNcor=21; rlogoDP=34; rNIcor=38; rNsEucl=9; rSSD=23; rNSW=11; rank_mean=21.714; match_rank=22
a	0	0	0	0	19	40	27	62	2	92	3	2	97	99	97	5	17
c	0	0	0	0	22	17	22	6	28	0	0	95	0	0	0	4	14
g	0	0	0	0	34	15	17	12	68	0	0	3	0	1	2	91	62
t	0	0	0	0	25	28	35	20	3	8	97	1	2	1	2	1	7
7260_RVE1_2_ArabidopsisPBM_20140210__shift5 (7260_RVE1_2_ArabidopsisPBM_20140210_) 0.861 0.574 4.351 0.556 0.894 1.448 0.909 27 11 28 7 22 36 29 22.857 23 
; positions_6nt_m1 versus 7260_RVE1_2_ArabidopsisPBM_20140210_; m=23/51; ncol2=10; w=8; offset=-2; strand=D; shift=5; score=22.8571; -----smatATCwaw--
; cor=0.861; Ncor=0.574; logoDP=4.351; NIcor=0.556; NsEucl=0.894; SSD=1.448; NSW=0.909; rcor=27; rNcor=11; rlogoDP=28; rNIcor=7; rNsEucl=22; rSSD=36; rNSW=29; rank_mean=22.857; match_rank=23
a	0	0	0	0	0	20	55	65	23	91	2	6	30	61	50	0	0
c	0	0	0	0	0	31	30	9	3	4	3	89	20	16	16	0	0
g	0	0	0	0	0	29	4	16	15	3	4	4	5	13	6	0	0
t	0	0	0	0	0	20	11	10	59	2	91	1	45	10	28	0	0
2455_MA0064.1_JASPAR_CORE_2009__shift12 (2455_MA0064.1_JASPAR_CORE_2009_) 0.883 0.441 6.129 0.457 0.882 0.700 0.930 22 40 18 20 33 8 22 23.286 24 
; positions_6nt_m1 versus 2455_MA0064.1_JASPAR_CORE_2009_; m=24/51; ncol2=5; w=5; offset=5; strand=D; shift=12; score=23.2857; ------------AAAGy
; cor=0.883; Ncor=0.441; logoDP=6.129; NIcor=0.457; NsEucl=0.882; SSD=0.700; NSW=0.930; rcor=22; rNcor=40; rlogoDP=18; rNIcor=20; rNsEucl=33; rSSD=8; rNSW=22; rank_mean=23.286; match_rank=24
a	0	0	0	0	0	0	0	0	0	0	0	0	16	16	16	0	1
c	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	1
t	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5
7663_TCF7_f1_HOCOMOCO_v9__shift8 (7663_TCF7_f1_HOCOMOCO_v9_) 0.802 0.601 6.511 0.603 0.894 1.818 0.899 42 7 14 4 21 42 35 23.571 25 
; positions_6nt_m1 versus 7663_TCF7_f1_HOCOMOCO_v9_; m=25/51; ncol2=11; w=9; offset=1; strand=D; shift=8; score=23.5714; --------swwCAAAGs
; cor=0.802; Ncor=0.601; logoDP=6.511; NIcor=0.603; NsEucl=0.894; SSD=1.818; NSW=0.899; rcor=42; rNcor=7; rlogoDP=14; rNIcor=4; rNsEucl=21; rSSD=42; rNSW=35; rank_mean=23.571; match_rank=25
a	0	0	0	0	0	0	0	0	0	9	7	1	15	16	15	0	1
c	0	0	0	0	0	0	0	0	5	0	1	13	0	0	1	2	8
g	0	0	0	0	0	0	0	0	9	2	1	1	0	0	0	13	5
t	0	0	0	0	0	0	0	0	2	5	7	1	1	0	0	1	2
2445_MA0053.1_JASPAR_CORE_2009__shift12 (2445_MA0053.1_JASPAR_CORE_2009_) 0.875 0.437 6.131 0.453 0.877 0.751 0.925 24 42 17 22 35 10 24 24.857 26 
; positions_6nt_m1 versus 2445_MA0053.1_JASPAR_CORE_2009_; m=26/51; ncol2=5; w=5; offset=5; strand=D; shift=12; score=24.8571; ------------AAAGc
; cor=0.875; Ncor=0.437; logoDP=6.131; NIcor=0.453; NsEucl=0.877; SSD=0.751; NSW=0.925; rcor=24; rNcor=42; rlogoDP=17; rNIcor=22; rNsEucl=35; rSSD=10; rNSW=24; rank_mean=24.857; match_rank=26
a	0	0	0	0	0	0	0	0	0	0	0	0	15	15	15	0	3
c	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0
t	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
1781_MA0222.1_JASPAR_CORE_2009__rc_shift8 (1781_MA0222.1_JASPAR_CORE_2009__rc) 0.839 0.672 3.975 0.139 0.892 1.494 0.907 30 6 30 31 24 37 30 26.857 27 
; positions_6nt_m1 versus 1781_MA0222.1_JASPAR_CORE_2009__rc; m=27/51; ncol2=8; w=8; offset=1; strand=R; shift=8; score=26.8571; --------yRTCAAAa-
; cor=0.839; Ncor=0.672; logoDP=3.975; NIcor=0.139; NsEucl=0.892; SSD=1.494; NSW=0.907; rcor=30; rNcor=6; rlogoDP=30; rNIcor=31; rNsEucl=24; rSSD=37; rNSW=30; rank_mean=26.857; match_rank=27
a	0	0	0	0	0	0	0	0	0	5	0	0	17	17	14	5	0
c	0	0	0	0	0	0	0	0	6	0	0	17	0	0	2	4	0
g	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	4	0
t	0	0	0	0	0	0	0	0	11	0	17	0	0	0	1	4	0
2704_PF0017.1_JASPAR_CORE_2009__rc_shift12 (2704_PF0017.1_JASPAR_CORE_2009__rc) 0.893 0.406 4.121 0.180 0.875 0.778 0.922 13 50 29 28 36 11 25 27.429 28 
; positions_6nt_m1 versus 2704_PF0017.1_JASPAR_CORE_2009__rc; m=28/51; ncol2=6; w=5; offset=5; strand=R; shift=12; score=27.4286; ------------AAAGT
; cor=0.893; Ncor=0.406; logoDP=4.121; NIcor=0.180; NsEucl=0.875; SSD=0.778; NSW=0.922; rcor=13; rNcor=50; rlogoDP=29; rNIcor=28; rNsEucl=36; rSSD=11; rNSW=25; rank_mean=27.429; match_rank=28
a	0	0	0	0	0	0	0	0	0	0	0	0	8768	8768	8768	0	0
c	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8768	0
t	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8768
4976_pan_DrosophilaTF_1.1__rc_shift6 (4976_pan_DrosophilaTF_1.1__rc) 0.842 0.766 4.878 0.093 0.896 2.181 0.891 29 2 24 33 20 47 38 27.571 29 
; positions_6nt_m1 versus 4976_pan_DrosophilaTF_1.1__rc; m=29/51; ncol2=11; w=10; offset=-1; strand=R; shift=6; score=27.5714; ------AAGATCAAAGG
; cor=0.842; Ncor=0.766; logoDP=4.878; NIcor=0.093; NsEucl=0.896; SSD=2.181; NSW=0.891; rcor=29; rNcor=2; rlogoDP=24; rNIcor=33; rNsEucl=20; rSSD=47; rNSW=38; rank_mean=27.571; match_rank=29
a	0	0	0	0	0	0	1	1	0	1	0	0	1	1	1	0	0
c	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
g	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1
t	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
6387_2a07_K_3D-footprint_20130124__rc_shift11 (6387_2a07_K_3D-footprint_20130124__rc) 0.894 0.447 0.438 -0.080 0.887 0.638 0.936 11 39 47 45 29 6 17 27.714 30 
; positions_6nt_m1 versus 6387_2a07_K_3D-footprint_20130124__rc; m=30/51; ncol2=5; w=5; offset=4; strand=R; shift=11; score=27.7143; -----------CAAat-
; cor=0.894; Ncor=0.447; logoDP=0.438; NIcor=-0.080; NsEucl=0.887; SSD=0.638; NSW=0.936; rcor=11; rNcor=39; rlogoDP=47; rNIcor=45; rNsEucl=29; rSSD=6; rNSW=17; rank_mean=27.714; match_rank=30
a	0	0	0	0	0	0	0	0	0	0	0	0	96	96	54	13	0
c	0	0	0	0	0	0	0	0	0	0	0	96	0	0	13	16	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	13	0
t	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	54	0
6344_1vtn_C_3D-footprint_20130124__shift5 (6344_1vtn_C_3D-footprint_20130124_) 0.836 0.488 5.176 0.475 0.883 1.333 0.905 32 28 23 18 31 33 31 28.000 31 
; positions_6nt_m1 versus 6344_1vtn_C_3D-footprint_20130124_; m=31/51; ncol2=9; w=7; offset=-2; strand=D; shift=5; score=     28; -----CTAnnTCAa---
; cor=0.836; Ncor=0.488; logoDP=5.176; NIcor=0.475; NsEucl=0.883; SSD=1.333; NSW=0.905; rcor=32; rNcor=28; rlogoDP=23; rNIcor=18; rNsEucl=31; rSSD=33; rNSW=31; rank_mean=28.000; match_rank=31
a	0	0	0	0	0	0	0	69	24	24	0	0	96	61	0	0	0
c	0	0	0	0	0	87	0	11	24	24	0	78	0	8	0	0	0
g	0	0	0	0	0	1	0	8	24	24	0	10	0	19	0	0	0
t	0	0	0	0	0	8	96	8	24	24	96	8	0	8	0	0	0
6556_3dfv_C_3D-footprint_20130124__shift7 (6556_3dfv_C_3D-footprint_20130124_) 0.822 0.493 6.434 0.503 0.870 1.211 0.899 36 27 15 15 41 28 34 28.000 32 
; positions_6nt_m1 versus 6556_3dfv_C_3D-footprint_20130124_; m=32/51; ncol2=6; w=6; offset=0; strand=D; shift=7; score=     28; -------tTATcA----
; cor=0.822; Ncor=0.493; logoDP=6.434; NIcor=0.503; NsEucl=0.870; SSD=1.211; NSW=0.899; rcor=36; rNcor=27; rlogoDP=15; rNIcor=15; rNsEucl=41; rSSD=28; rNSW=34; rank_mean=28.000; match_rank=32
a	0	0	0	0	0	0	0	12	0	96	0	10	96	0	0	0	0
c	0	0	0	0	0	0	0	10	11	0	0	53	0	0	0	0	0
g	0	0	0	0	0	0	0	10	0	0	0	10	0	0	0	0	0
t	0	0	0	0	0	0	0	64	85	0	96	23	0	0	0	0	0
2350_CN0187.1_JASPAR_CORE_2009__rc_shift1 (2350_CN0187.1_JASPAR_CORE_2009__rc) 0.856 0.482 3.941 0.026 0.902 1.560 0.913 28 31 31 42 17 39 27 30.714 33 
; positions_6nt_m1 versus 2350_CN0187.1_JASPAR_CORE_2009__rc; m=33/51; ncol2=15; w=9; offset=-6; strand=R; shift=1; score=30.7143; -AATGAAAGAwCAAAG-
; cor=0.856; Ncor=0.482; logoDP=3.941; NIcor=0.026; NsEucl=0.902; SSD=1.560; NSW=0.913; rcor=28; rNcor=31; rlogoDP=31; rNIcor=42; rNsEucl=17; rSSD=39; rNSW=27; rank_mean=30.714; match_rank=33
a	0	47	48	0	4	40	47	47	0	44	18	0	48	46	47	0	0
c	0	0	0	0	3	2	0	0	1	0	0	41	0	2	0	1	0
g	0	1	0	0	41	5	1	0	46	1	1	2	0	0	1	47	0
t	0	0	0	48	0	1	0	1	1	3	29	5	0	0	0	0	0
6753_6gat_A_3D-footprint_20130124__shift7 (6753_6gat_A_3D-footprint_20130124_) 0.803 0.482 4.741 0.485 0.867 1.265 0.895 39 30 25 16 42 29 36 31.000 34 
; positions_6nt_m1 versus 6753_6gat_A_3D-footprint_20130124_; m=34/51; ncol2=6; w=6; offset=0; strand=D; shift=7; score=     31; -------CnATCA----
; cor=0.803; Ncor=0.482; logoDP=4.741; NIcor=0.485; NsEucl=0.867; SSD=1.265; NSW=0.895; rcor=39; rNcor=30; rlogoDP=25; rNIcor=16; rNsEucl=42; rSSD=29; rNSW=36; rank_mean=31.000; match_rank=34
a	0	0	0	0	0	0	0	11	24	67	9	0	96	0	0	0	0
c	0	0	0	0	0	0	0	67	24	9	11	96	0	0	0	0	0
g	0	0	0	0	0	0	0	9	24	11	9	0	0	0	0	0	0
t	0	0	0	0	0	0	0	9	24	9	67	0	0	0	0	0	0
1493_MA0298.1_JASPAR_CORE_2009__shift7 (1493_MA0298.1_JASPAR_CORE_2009_) 0.811 0.487 8.445 0.484 0.852 1.569 0.869 38 29 7 17 47 40 46 32.000 35 
; positions_6nt_m1 versus 1493_MA0298.1_JASPAR_CORE_2009_; m=35/51; ncol2=6; w=6; offset=0; strand=D; shift=7; score=     32; -------CTATCA----
; cor=0.811; Ncor=0.487; logoDP=8.445; NIcor=0.484; NsEucl=0.852; SSD=1.569; NSW=0.869; rcor=38; rNcor=29; rlogoDP=7; rNIcor=17; rNsEucl=47; rSSD=40; rNSW=46; rank_mean=32.000; match_rank=35
a	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
c	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
t	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
5975_1akh_A_3D-footprint_20130124__rc_shift6 (5975_1akh_A_3D-footprint_20130124__rc) 0.839 0.457 0.757 -0.041 0.879 1.061 0.912 31 35 45 44 34 16 28 33.286 36 
; positions_6nt_m1 versus 5975_1akh_A_3D-footprint_20130124__rc; m=36/51; ncol2=7; w=6; offset=-1; strand=R; shift=6; score=33.2857; ------TATnTCA----
; cor=0.839; Ncor=0.457; logoDP=0.757; NIcor=-0.041; NsEucl=0.879; SSD=1.061; NSW=0.912; rcor=31; rNcor=35; rlogoDP=45; rNIcor=44; rNsEucl=34; rSSD=16; rNSW=28; rank_mean=33.286; match_rank=36
a	0	0	0	0	0	0	8	69	0	24	0	0	69	0	0	0	0
c	0	0	0	0	0	0	11	8	9	24	0	96	8	0	0	0	0
g	0	0	0	0	0	0	8	11	0	24	0	0	11	0	0	0	0
t	0	0	0	0	0	0	69	8	87	24	96	0	8	0	0	0	0
1960_PB0105.1_JASPAR_CORE_2009__shift3 (1960_PB0105.1_JASPAR_CORE_2009_) 0.779 0.520 1.922 0.521 0.889 2.486 0.876 44 24 43 12 27 49 43 34.571 37 
; positions_6nt_m1 versus 1960_PB0105.1_JASPAR_CORE_2009_; m=37/51; ncol2=15; w=10; offset=-4; strand=D; shift=3; score=34.5714; ---hmmvrtATcrdrty
; cor=0.779; Ncor=0.520; logoDP=1.922; NIcor=0.521; NsEucl=0.889; SSD=2.486; NSW=0.876; rcor=44; rNcor=24; rlogoDP=43; rNIcor=12; rNsEucl=27; rSSD=49; rNSW=43; rank_mean=34.571; match_rank=37
a	0	0	0	31	25	26	27	37	7	81	4	18	50	35	44	25	22
c	0	0	0	28	30	34	34	15	19	7	17	58	7	10	21	9	32
g	0	0	0	16	22	25	33	39	16	10	10	21	25	27	25	18	12
t	0	0	0	25	23	16	6	8	58	2	69	3	17	28	10	49	34
2219_CN0056.1_JASPAR_CORE_2009__shift2 (2219_CN0056.1_JASPAR_CORE_2009_) 0.760 0.456 10.449 0.469 0.872 2.649 0.853 50 36 3 19 39 51 50 35.429 38 
; positions_6nt_m1 versus 2219_CN0056.1_JASPAR_CORE_2009_; m=38/51; ncol2=14; w=9; offset=-5; strand=D; shift=2; score=35.4286; --YTCATwAATCAmAG-
; cor=0.760; Ncor=0.456; logoDP=10.449; NIcor=0.469; NsEucl=0.872; SSD=2.649; NSW=0.853; rcor=50; rNcor=36; rlogoDP=3; rNIcor=19; rNsEucl=39; rSSD=51; rNSW=50; rank_mean=35.429; match_rank=38
a	0	0	0	0	0	49	0	18	49	49	0	0	49	29	49	0	0
c	0	0	36	0	49	0	0	0	0	0	0	49	0	15	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	49	0
t	0	0	13	49	0	0	49	31	0	0	49	0	0	0	0	0	0
6070_1gau_A_3D-footprint_20130124__shift8 (6070_1gau_A_3D-footprint_20130124_) 0.803 0.402 5.895 0.400 0.846 1.191 0.881 40 51 19 25 50 26 41 36.000 39 
; positions_6nt_m1 versus 6070_1gau_A_3D-footprint_20130124_; m=39/51; ncol2=5; w=5; offset=1; strand=D; shift=8; score=     36; --------tATCt----
; cor=0.803; Ncor=0.402; logoDP=5.895; NIcor=0.400; NsEucl=0.846; SSD=1.191; NSW=0.881; rcor=40; rNcor=51; rlogoDP=19; rNIcor=25; rNsEucl=50; rSSD=26; rNSW=41; rank_mean=36.000; match_rank=39
a	0	0	0	0	0	0	0	0	13	96	0	0	13	0	0	0	0
c	0	0	0	0	0	0	0	0	13	0	0	96	16	0	0	0	0
g	0	0	0	0	0	0	0	0	13	0	0	0	13	0	0	0	0
t	0	0	0	0	0	0	0	0	57	0	96	0	54	0	0	0	0
2204_CN0041.1_JASPAR_CORE_2009__rc_shift0 (2204_CN0041.1_JASPAR_CORE_2009__rc) 0.803 0.425 4.621 0.153 0.888 2.036 0.887 41 44 26 29 28 45 40 36.143 40 
; positions_6nt_m1 versus 2204_CN0041.1_JASPAR_CORE_2009__rc; m=40/51; ncol2=16; w=9; offset=-7; strand=R; shift=0; score=36.1429; mATTwGCATTTCAAAg-
; cor=0.803; Ncor=0.425; logoDP=4.621; NIcor=0.153; NsEucl=0.888; SSD=2.036; NSW=0.887; rcor=41; rNcor=44; rlogoDP=26; rNIcor=29; rNsEucl=28; rSSD=45; rNSW=40; rank_mean=36.143; match_rank=40
a	165	438	5	6	290	67	33	465	18	47	5	14	435	437	445	108	0
c	197	11	2	15	1	19	430	3	4	5	13	406	9	7	2	37	0
g	47	6	0	1	9	373	0	0	4	15	8	38	1	16	8	254	0
t	59	13	461	446	168	9	5	0	442	401	442	10	23	8	13	69	0
7300_ARI3A_f1_HOCOMOCO_v9__shift9 (7300_ARI3A_f1_HOCOMOCO_v9_) 0.764 0.459 8.757 0.457 0.831 2.058 0.829 48 34 5 21 51 46 51 36.571 41 
; positions_6nt_m1 versus 7300_ARI3A_f1_HOCOMOCO_v9_; m=41/51; ncol2=6; w=6; offset=2; strand=D; shift=9; score=36.5714; ---------ATTAAA--
; cor=0.764; Ncor=0.459; logoDP=8.757; NIcor=0.457; NsEucl=0.831; SSD=2.058; NSW=0.829; rcor=48; rNcor=34; rlogoDP=5; rNIcor=21; rNsEucl=51; rSSD=46; rNSW=51; rank_mean=36.571; match_rank=41
a	0	0	0	0	0	0	0	0	0	47	0	0	47	47	39	0	0
c	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
t	0	0	0	0	0	0	0	0	0	0	47	47	0	0	8	0	0
2563_MA0307.1_JASPAR_CORE_2009__rc_shift7 (2563_MA0307.1_JASPAR_CORE_2009__rc) 0.831 0.416 0.488 -0.142 0.862 0.952 0.905 33 45 46 49 44 14 32 37.571 42 
; positions_6nt_m1 versus 2563_MA0307.1_JASPAR_CORE_2009__rc; m=42/51; ncol2=5; w=5; offset=0; strand=R; shift=7; score=37.5714; -------yWATC-----
; cor=0.831; Ncor=0.416; logoDP=0.488; NIcor=-0.142; NsEucl=0.862; SSD=0.952; NSW=0.905; rcor=33; rNcor=45; rlogoDP=46; rNIcor=49; rNsEucl=44; rSSD=14; rNSW=32; rank_mean=37.571; match_rank=42
a	0	0	0	0	0	0	0	12	26	100	0	0	0	0	0	0	0
c	0	0	0	0	0	0	0	27	0	0	0	100	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
t	0	0	0	0	0	0	0	61	74	0	100	0	0	0	0	0	0
6264_1puf_B_3D-footprint_20130124__rc_shift8 (6264_1puf_B_3D-footprint_20130124__rc) 0.828 0.497 0.297 -0.103 0.867 1.282 0.893 34 26 49 47 43 30 37 38.000 43 
; positions_6nt_m1 versus 6264_1puf_B_3D-footprint_20130124__rc; m=43/51; ncol2=6; w=6; offset=1; strand=R; shift=8; score=     38; --------tATCAt---
; cor=0.828; Ncor=0.497; logoDP=0.297; NIcor=-0.103; NsEucl=0.867; SSD=1.282; NSW=0.893; rcor=34; rNcor=26; rlogoDP=49; rNIcor=47; rNsEucl=43; rSSD=30; rNSW=37; rank_mean=38.000; match_rank=43
a	0	0	0	0	0	0	0	0	9	76	0	0	96	11	0	0	0
c	0	0	0	0	0	0	0	0	9	9	0	96	0	19	0	0	0
g	0	0	0	0	0	0	0	0	21	9	0	0	0	9	0	0	0
t	0	0	0	0	0	0	0	0	57	2	96	0	0	57	0	0	0
2249_CN0086.1_JASPAR_CORE_2009__rc_shift8 (2249_CN0086.1_JASPAR_CORE_2009__rc) 0.780 0.439 4.385 0.081 0.883 2.216 0.877 43 41 27 34 32 48 42 38.143 44 
; positions_6nt_m1 versus 2249_CN0086.1_JASPAR_CORE_2009__rc; m=44/51; ncol2=15; w=9; offset=1; strand=R; shift=8; score=38.1429; --------AATCAAArG
; cor=0.780; Ncor=0.439; logoDP=4.385; NIcor=0.081; NsEucl=0.883; SSD=2.216; NSW=0.877; rcor=43; rNcor=41; rlogoDP=27; rNIcor=34; rNsEucl=32; rSSD=48; rNSW=42; rank_mean=38.143; match_rank=44
a	0	0	0	0	0	0	0	0	67	93	16	0	93	83	90	56	0
c	0	0	0	0	0	0	0	0	7	0	0	93	0	0	3	0	15
g	0	0	0	0	0	0	0	0	19	0	0	0	0	10	0	35	78
t	0	0	0	0	0	0	0	0	0	0	77	0	0	0	0	2	0
2820_PF0133.1_JASPAR_CORE_2009__rc_shift9 (2820_PF0133.1_JASPAR_CORE_2009__rc) 0.763 0.407 5.573 0.287 0.875 2.001 0.875 49 49 21 26 37 44 44 38.571 45 
; positions_6nt_m1 versus 2820_PF0133.1_JASPAR_CORE_2009__rc; m=45/51; ncol2=13; w=8; offset=2; strand=R; shift=9; score=38.5714; ---------rTCArhmw
; cor=0.763; Ncor=0.407; logoDP=5.573; NIcor=0.287; NsEucl=0.875; SSD=2.001; NSW=0.875; rcor=49; rNcor=49; rlogoDP=21; rNIcor=26; rNsEucl=37; rSSD=44; rNSW=44; rank_mean=38.571; match_rank=45
a	0	0	0	0	0	0	0	0	0	75	0	0	168	71	58	43	85
c	0	0	0	0	0	0	0	0	0	0	0	168	0	39	48	53	0
g	0	0	0	0	0	0	0	0	0	93	0	0	0	53	19	35	0
t	0	0	0	0	0	0	0	0	0	0	168	0	0	5	43	37	83
5048_ZmHOX2a_2__Athamap_20091028__rc_shift6 (5048_ZmHOX2a_2__Athamap_20091028__rc) 0.825 0.450 0.314 -0.166 0.871 1.207 0.899 35 38 48 50 40 27 33 38.714 46 
; positions_6nt_m1 versus 5048_ZmHOX2a_2__Athamap_20091028__rc; m=46/51; ncol2=7; w=6; offset=-1; strand=R; shift=6; score=38.7143; ------cmGATCa----
; cor=0.825; Ncor=0.450; logoDP=0.314; NIcor=-0.166; NsEucl=0.871; SSD=1.207; NSW=0.899; rcor=35; rNcor=38; rlogoDP=48; rNIcor=50; rNsEucl=40; rSSD=27; rNSW=33; rank_mean=38.714; match_rank=46
a	0	0	0	0	0	0	6	16	0	27	0	0	15	0	0	0	0
c	0	0	0	0	0	0	14	7	0	0	0	27	5	0	0	0	0
g	0	0	0	0	0	0	4	4	27	0	0	0	2	0	0	0	0
t	0	0	0	0	0	0	3	0	0	0	27	0	5	0	0	0	0
2431_MA0037.1_JASPAR_CORE_2009__rc_shift7 (2431_MA0037.1_JASPAR_CORE_2009__rc) 0.759 0.455 3.521 0.251 0.854 1.532 0.872 51 37 33 27 46 38 45 39.571 47 
; positions_6nt_m1 versus 2431_MA0037.1_JASPAR_CORE_2009__rc; m=47/51; ncol2=6; w=6; offset=0; strand=R; shift=7; score=39.5714; -------cwATCw----
; cor=0.759; Ncor=0.455; logoDP=3.521; NIcor=0.251; NsEucl=0.854; SSD=1.532; NSW=0.872; rcor=51; rNcor=37; rlogoDP=33; rNIcor=27; rNsEucl=46; rSSD=38; rNSW=45; rank_mean=39.571; match_rank=47
a	0	0	0	0	0	0	0	8	19	58	1	0	20	0	0	0	0
c	0	0	0	0	0	0	0	37	4	5	1	62	4	0	0	0	0
g	0	0	0	0	0	0	0	3	1	0	0	1	14	0	0	0	0
t	0	0	0	0	0	0	0	15	39	0	61	0	25	0	0	0	0
1793_MA0235.1_JASPAR_CORE_2009__rc_shift7 (1793_MA0235.1_JASPAR_CORE_2009__rc) 0.779 0.545 0.856 -0.117 0.861 1.896 0.865 45 14 44 48 45 43 47 40.857 48 
; positions_6nt_m1 versus 1793_MA0235.1_JASPAR_CORE_2009__rc; m=48/51; ncol2=7; w=7; offset=0; strand=R; shift=7; score=40.8571; -------hAATCAA---
; cor=0.779; Ncor=0.545; logoDP=0.856; NIcor=-0.117; NsEucl=0.861; SSD=1.896; NSW=0.865; rcor=45; rNcor=14; rlogoDP=44; rNIcor=48; rNsEucl=45; rSSD=43; rNSW=47; rank_mean=40.857; match_rank=48
a	0	0	0	0	0	0	0	6	15	15	0	0	15	12	0	0	0
c	0	0	0	0	0	0	0	4	0	0	0	15	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
t	0	0	0	0	0	0	0	5	0	0	15	0	0	1	0	0	0
2430_MA0036.1_JASPAR_CORE_2009__rc_shift8 (2430_MA0036.1_JASPAR_CORE_2009__rc) 0.814 0.407 0.110 -0.082 0.851 1.115 0.889 37 48 50 46 48 21 39 41.286 49 
; positions_6nt_m1 versus 2430_MA0036.1_JASPAR_CORE_2009__rc; m=49/51; ncol2=5; w=5; offset=1; strand=R; shift=8; score=41.2857; --------yATCc----
; cor=0.814; Ncor=0.407; logoDP=0.110; NIcor=-0.082; NsEucl=0.851; SSD=1.115; NSW=0.889; rcor=37; rNcor=48; rlogoDP=50; rNIcor=46; rNsEucl=48; rSSD=21; rNSW=39; rank_mean=41.286; match_rank=49
a	0	0	0	0	0	0	0	0	6	53	0	0	9	0	0	0	0
c	0	0	0	0	0	0	0	0	15	0	1	48	18	0	0	0	0
g	0	0	0	0	0	0	0	0	7	0	0	5	13	0	0	0	0
t	0	0	0	0	0	0	0	0	25	0	52	0	13	0	0	0	0
1763_MA0204.1_JASPAR_CORE_2009__rc_shift7 (1763_MA0204.1_JASPAR_CORE_2009__rc) 0.778 0.467 2.561 0.025 0.849 1.631 0.864 46 33 39 43 49 41 48 42.714 50 
; positions_6nt_m1 versus 1763_MA0204.1_JASPAR_CORE_2009__rc; m=50/51; ncol2=6; w=6; offset=0; strand=R; shift=7; score=42.7143; -------GTrTCA----
; cor=0.778; Ncor=0.467; logoDP=2.561; NIcor=0.025; NsEucl=0.849; SSD=1.631; NSW=0.864; rcor=46; rNcor=33; rlogoDP=39; rNIcor=43; rNsEucl=49; rSSD=41; rNSW=48; rank_mean=42.714; match_rank=50
a	0	0	0	0	0	0	0	0	0	9	0	0	20	0	0	0	0
c	0	0	0	0	0	0	0	0	0	4	0	20	0	0	0	0	0
g	0	0	0	0	0	0	0	19	0	7	0	0	0	0	0	0	0
t	0	0	0	0	0	0	0	1	20	0	20	0	0	0	0	0	0
2193_CN0030.1_JASPAR_CORE_2009__rc_shift1 (2193_CN0030.1_JASPAR_CORE_2009__rc) 0.775 0.436 3.223 0.043 0.874 2.553 0.858 47 43 38 39 38 50 49 43.429 51 
; positions_6nt_m1 versus 2193_CN0030.1_JASPAR_CORE_2009__rc; m=51/51; ncol2=15; w=9; offset=-6; strand=R; shift=1; score=43.4286; -wTTGACATTTCAAAG-
; cor=0.775; Ncor=0.436; logoDP=3.223; NIcor=0.043; NsEucl=0.874; SSD=2.553; NSW=0.858; rcor=47; rNcor=43; rlogoDP=38; rNIcor=39; rNsEucl=38; rSSD=50; rNSW=49; rank_mean=43.429; match_rank=51
a	0	63	8	0	8	141	5	153	0	0	0	0	144	139	143	17	0
c	0	20	10	0	0	0	148	0	0	0	0	153	5	11	0	0	0
g	0	8	29	0	129	12	0	0	0	0	0	0	0	2	10	121	0
t	0	62	106	153	16	0	0	0	153	153	153	0	4	1	0	15	0