One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_7nt_m1/peak-motifs_positions_7nt_m1.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_7nt_m1/peak-motifs_positions_7nt_m1_vs_db_footprintDB

One-to-n matrix alignment; reference matrix: positions_7nt_m1_shift2 ; 16 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
positions_7nt_m1_shift2 (positions_7nt_m1)
; positions_7nt_m1; m=0 (reference); ncol1=11; shift=2; ncol=14; --vsAGGGGCCgg- ; Alignment reference a 0 0 2 1 6 0 0 0 0 0 0 1 1 0 c 0 0 2 3 0 0 0 0 0 6 6 1 1 0 g 0 0 2 2 0 6 6 6 6 0 0 4 4 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0

2588_MA0342.1_JASPAR_CORE_2009__shift4 (2588_MA0342.1_JASPAR_CORE_2009_) 0.994 0.452 8.688 0.451 0.968 0.052 0.995 1 12 2 7 1 1 1 3.571 1
; positions_7nt_m1 versus 2588_MA0342.1_JASPAR_CORE_2009_; m=1/15; ncol2=5; w=5; offset=2; strand=D; shift=4; score= 3.5714; ----AGGGG----- ; cor=0.994; Ncor=0.452; logoDP=8.688; NIcor=0.451; NsEucl=0.968; SSD=0.052; NSW=0.995; rcor=1; rNcor=12; rlogoDP=2; rNIcor=7; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=3.571; match_rank=1 a 0 0 0 0 83 0 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 16 99 99 99 99 0 0 0 0 0 t 0 0 0 0 0 0 0 0 1 0 0 0 0 0

2615_MA0381.1_JASPAR_CORE_2009__shift7 (2615_MA0381.1_JASPAR_CORE_2009_) 0.926 0.505 6.941 0.508 0.917 0.497 0.959 4 5 9 2 4 4 4 4.571 2
; positions_7nt_m1 versus 2615_MA0381.1_JASPAR_CORE_2009_; m=2/15; ncol2=6; w=6; offset=5; strand=D; shift=7; score= 4.5714; -------GGCCrk- ; cor=0.926; Ncor=0.505; logoDP=6.941; NIcor=0.508; NsEucl=0.917; SSD=0.497; NSW=0.959; rcor=4; rNcor=5; rlogoDP=9; rNIcor=2; rNsEucl=4; rSSD=4; rNSW=4; rank_mean=4.571; match_rank=2 a 0 0 0 0 0 0 0 0 0 0 0 49 21 0 c 0 0 0 0 0 0 0 0 0 100 84 15 18 0 g 0 0 0 0 0 0 0 100 100 0 16 37 28 0 t 0 0 0 0 0 0 0 0 0 0 0 0 32 0

2604_MA0366.1_JASPAR_CORE_2009__shift4 (2604_MA0366.1_JASPAR_CORE_2009_) 0.990 0.450 8.421 0.446 0.960 0.079 0.992 2 13 5 9 2 2 2 5.000 3
; positions_7nt_m1 versus 2604_MA0366.1_JASPAR_CORE_2009_; m=3/15; ncol2=5; w=5; offset=2; strand=D; shift=4; score= 5; ----AGGGG----- ; cor=0.990; Ncor=0.450; logoDP=8.421; NIcor=0.446; NsEucl=0.960; SSD=0.079; NSW=0.992; rcor=2; rNcor=13; rlogoDP=5; rNIcor=9; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=5.000; match_rank=3 a 0 0 0 0 100 0 0 0 11 0 0 0 0 0 c 0 0 0 0 0 0 0 0 12 0 0 0 0 0 g 0 0 0 0 0 100 100 100 77 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0

2587_MA0341.1_JASPAR_CORE_2009__shift4 (2587_MA0341.1_JASPAR_CORE_2009_) 0.965 0.439 8.133 0.432 0.927 0.265 0.974 3 14 7 10 3 3 3 6.143 4
; positions_7nt_m1 versus 2587_MA0341.1_JASPAR_CORE_2009_; m=4/15; ncol2=5; w=5; offset=2; strand=D; shift=4; score= 6.1429; ----rGGGG----- ; cor=0.965; Ncor=0.439; logoDP=8.133; NIcor=0.432; NsEucl=0.927; SSD=0.265; NSW=0.974; rcor=3; rNcor=14; rlogoDP=7; rNIcor=10; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=6.143; match_rank=4 a 0 0 0 0 60 0 0 0 0 0 0 0 0 0 c 0 0 0 0 7 0 0 0 0 0 0 0 0 0 g 0 0 0 0 32 100 100 100 100 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0

2602_MA0364.1_JASPAR_CORE_2009__rc_shift2 (2602_MA0364.1_JASPAR_CORE_2009__rc) 0.909 0.578 1.969 0.011 0.912 0.767 0.945 5 2 13 13 5 5 5 6.857 5
; positions_7nt_m1 versus 2602_MA0364.1_JASPAR_CORE_2009__rc; m=5/15; ncol2=7; w=7; offset=0; strand=R; shift=2; score= 6.8571; --tCAGGGG----- ; cor=0.909; Ncor=0.578; logoDP=1.969; NIcor=0.011; NsEucl=0.912; SSD=0.767; NSW=0.945; rcor=5; rNcor=2; rlogoDP=13; rNIcor=13; rNsEucl=5; rSSD=5; rNSW=5; rank_mean=6.857; match_rank=5 a 0 0 13 5 100 0 0 0 5 0 0 0 0 0 c 0 0 23 95 0 0 0 0 0 0 0 0 0 0 g 0 0 8 0 0 100 100 95 95 0 0 0 0 0 t 0 0 56 0 0 0 0 5 0 0 0 0 0 0

1714_MA0155.1_JASPAR_CORE_2009__shift0 (1714_MA0155.1_JASPAR_CORE_2009_) 0.762 0.586 8.805 0.613 0.889 2.465 0.877 14 1 1 1 6 15 11 7.000 6
; positions_7nt_m1 versus 1714_MA0155.1_JASPAR_CORE_2009_; m=6/15; ncol2=12; w=10; offset=-2; strand=D; shift=0; score= 7; TGymwGGGGkcr-- ; cor=0.762; Ncor=0.586; logoDP=8.805; NIcor=0.613; NsEucl=0.889; SSD=2.465; NSW=0.877; rcor=14; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=6; rSSD=15; rNSW=11; rank_mean=7.000; match_rank=6 a 1 0 0 6 16 0 0 0 0 0 3 10 0 0 c 0 0 8 15 0 0 1 0 0 2 16 0 0 0 g 4 20 3 0 0 24 23 24 24 16 0 12 0 0 t 19 4 13 3 8 0 0 0 0 6 5 2 0 0

7480_KLF6_si_HOCOMOCO_v9__shift6 (7480_KLF6_si_HOCOMOCO_v9_) 0.785 0.499 5.483 0.493 0.870 1.658 0.882 10 6 11 3 11 7 8 8.000 7
; positions_7nt_m1 versus 7480_KLF6_si_HOCOMOCO_v9_; m=7/15; ncol2=7; w=7; offset=4; strand=D; shift=6; score= 8; ------GGGgCkG- ; cor=0.785; Ncor=0.499; logoDP=5.483; NIcor=0.493; NsEucl=0.870; SSD=1.658; NSW=0.882; rcor=10; rNcor=6; rlogoDP=11; rNIcor=3; rNsEucl=11; rSSD=7; rNSW=8; rank_mean=8.000; match_rank=7 a 0 0 0 0 0 0 2 0 0 2 2 0 0 0 c 0 0 0 0 0 0 0 1 0 2 9 0 1 0 g 0 0 0 0 0 0 9 9 11 7 0 6 10 0 t 0 0 0 0 0 0 0 1 0 0 0 5 0 0

7492_MBD2_si_HOCOMOCO_v9__shift6 (7492_MBD2_si_HOCOMOCO_v9_) 0.829 0.414 6.288 0.375 0.881 1.380 0.901 6 15 10 12 7 6 6 8.857 8
; positions_7nt_m1 versus 7492_MBD2_si_HOCOMOCO_v9_; m=8/15; ncol2=10; w=7; offset=4; strand=D; shift=6; score= 8.8571; ------sSkCCGGm ; cor=0.829; Ncor=0.414; logoDP=6.288; NIcor=0.375; NsEucl=0.881; SSD=1.380; NSW=0.901; rcor=6; rNcor=15; rlogoDP=10; rNIcor=12; rNsEucl=7; rSSD=6; rNSW=6; rank_mean=8.857; match_rank=8 a 0 0 0 0 0 0 7 0 1 0 0 0 0 59 c 0 0 0 0 0 0 43 28 0 111 111 0 0 39 g 0 0 0 0 0 0 51 83 57 0 0 111 111 12 t 0 0 0 0 0 0 10 0 53 0 0 0 0 1

2562_MA0306.1_JASPAR_CORE_2009__rc_shift1 (2562_MA0306.1_JASPAR_CORE_2009__rc) 0.785 0.524 0.470 -0.128 0.880 1.857 0.884 9 4 14 14 8 9 7 9.286 9
; positions_7nt_m1 versus 2562_MA0306.1_JASPAR_CORE_2009__rc; m=9/15; ncol2=9; w=8; offset=-1; strand=R; shift=1; score= 9.2857; -wwwAGGGGw---- ; cor=0.785; Ncor=0.524; logoDP=0.470; NIcor=-0.128; NsEucl=0.880; SSD=1.857; NSW=0.884; rcor=9; rNcor=4; rlogoDP=14; rNIcor=14; rNsEucl=8; rSSD=9; rNSW=7; rank_mean=9.286; match_rank=9 a 0 30 27 32 100 13 0 0 3 25 0 0 0 0 c 0 18 16 15 0 0 0 0 0 12 0 0 0 0 g 0 19 11 4 0 87 100 100 97 22 0 0 0 0 t 0 32 46 49 0 0 0 0 0 41 0 0 0 0

2711_PF0024.1_JASPAR_CORE_2009__shift1 (2711_PF0024.1_JASPAR_CORE_2009_) 0.798 0.466 7.679 0.428 0.868 1.713 0.878 7 11 8 11 12 8 10 9.571 10
; positions_7nt_m1 versus 2711_PF0024.1_JASPAR_CORE_2009_; m=10/15; ncol2=8; w=7; offset=-1; strand=D; shift=1; score= 9.5714; -GGGAGGrG----- ; cor=0.798; Ncor=0.466; logoDP=7.679; NIcor=0.428; NsEucl=0.868; SSD=1.713; NSW=0.878; rcor=7; rNcor=11; rlogoDP=8; rNIcor=11; rNsEucl=12; rSSD=8; rNSW=10; rank_mean=9.571; match_rank=10 a 0 0 0 0 11176 0 0 3724 2525 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 11176 11176 11176 0 11176 11176 7452 8651 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0

7202_ATERF1_ArabidopsisPBM_20140210__shift5 (7202_ATERF1_ArabidopsisPBM_20140210_) 0.775 0.477 4.171 0.464 0.875 2.008 0.874 11 8 12 5 10 11 12 9.857 11
; positions_7nt_m1 versus 7202_ATERF1_ArabidopsisPBM_20140210_; m=11/15; ncol2=10; w=8; offset=3; strand=D; shift=5; score= 9.8571; -----GGcGsCGsC ; cor=0.775; Ncor=0.477; logoDP=4.171; NIcor=0.464; NsEucl=0.875; SSD=2.008; NSW=0.874; rcor=11; rNcor=8; rlogoDP=12; rNIcor=5; rNsEucl=10; rSSD=11; rNSW=12; rank_mean=9.857; match_rank=11 a 0 0 0 0 0 5 4 19 3 4 6 7 7 7 c 0 0 0 0 0 3 15 60 2 48 85 9 52 80 g 0 0 0 0 0 84 71 15 93 38 5 73 35 10 t 0 0 0 0 0 8 10 6 2 10 4 11 6 3

2642_MA0423.1_JASPAR_CORE_2009__rc_shift1 (2642_MA0423.1_JASPAR_CORE_2009__rc) 0.785 0.524 0.455 -0.144 0.878 1.915 0.880 8 3 15 15 9 10 9 9.857 12
; positions_7nt_m1 versus 2642_MA0423.1_JASPAR_CORE_2009__rc; m=12/15; ncol2=9; w=8; offset=-1; strand=R; shift=1; score= 9.8571; -dAwAGGGGk---- ; cor=0.785; Ncor=0.524; logoDP=0.455; NIcor=-0.144; NsEucl=0.878; SSD=1.915; NSW=0.880; rcor=8; rNcor=3; rlogoDP=15; rNIcor=15; rNsEucl=9; rSSD=10; rNSW=9; rank_mean=9.857; match_rank=12 a 0 34 75 32 100 0 0 9 2 13 0 0 0 0 c 0 5 4 8 0 0 0 0 1 23 0 0 0 0 g 0 28 0 0 0 100 100 91 97 28 0 0 0 0 t 0 32 21 60 0 0 0 0 0 35 0 0 0 0

7268_TCP23_ArabidopsisPBM_20140210__shift5 (7268_TCP23_ArabidopsisPBM_20140210_) 0.771 0.474 8.646 0.452 0.866 2.296 0.856 12 9 4 6 13 13 13 10.000 13
; positions_7nt_m1 versus 7268_TCP23_ArabidopsisPBM_20140210_; m=13/15; ncol2=10; w=8; offset=3; strand=D; shift=5; score= 10; -----GGGGCCCAC ; cor=0.771; Ncor=0.474; logoDP=8.646; NIcor=0.452; NsEucl=0.866; SSD=2.296; NSW=0.856; rcor=12; rNcor=9; rlogoDP=4; rNIcor=6; rNsEucl=13; rSSD=13; rNSW=13; rank_mean=10.000; match_rank=13 a 0 0 0 0 0 2 0 1 4 1 0 1 95 1 c 0 0 0 0 0 5 0 1 9 97 98 98 1 96 g 0 0 0 0 0 77 97 98 84 1 2 0 3 1 t 0 0 0 0 0 16 3 0 3 1 0 1 1 2

2693_PF0006.1_JASPAR_CORE_2009__shift6 (2693_PF0006.1_JASPAR_CORE_2009_) 0.761 0.484 8.413 0.478 0.850 2.210 0.842 15 7 6 4 15 12 15 10.571 14
; positions_7nt_m1 versus 2693_PF0006.1_JASPAR_CORE_2009_; m=14/15; ncol2=7; w=7; offset=4; strand=D; shift=6; score=10.5714; ------GGGCGGG- ; cor=0.761; Ncor=0.484; logoDP=8.413; NIcor=0.478; NsEucl=0.850; SSD=2.210; NSW=0.842; rcor=15; rNcor=7; rlogoDP=6; rNIcor=4; rNsEucl=15; rSSD=12; rNSW=15; rank_mean=10.571; match_rank=14 a 0 0 0 0 0 0 0 0 0 0 0 0 4149 0 c 0 0 0 0 0 0 0 0 0 18548 0 0 0 0 g 0 0 0 0 0 0 18548 18548 18548 0 18548 18548 14399 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0

7266_TCP15_ArabidopsisPBM_20140210__shift5 (7266_TCP15_ArabidopsisPBM_20140210_) 0.768 0.473 8.667 0.447 0.865 2.319 0.855 13 10 3 8 14 14 14 10.857 15
; positions_7nt_m1 versus 7266_TCP15_ArabidopsisPBM_20140210_; m=15/15; ncol2=10; w=8; offset=3; strand=D; shift=5; score=10.8571; -----GGGGCCCAC ; cor=0.768; Ncor=0.473; logoDP=8.667; NIcor=0.447; NsEucl=0.865; SSD=2.319; NSW=0.855; rcor=13; rNcor=10; rlogoDP=3; rNIcor=8; rNsEucl=14; rSSD=14; rNSW=14; rank_mean=10.857; match_rank=15 a 0 0 0 0 0 1 1 0 6 0 0 0 95 1 c 0 0 0 0 0 5 0 1 14 95 99 99 1 96 g 0 0 0 0 0 81 98 99 77 1 0 0 4 2 t 0 0 0 0 0 13 1 0 3 4 1 1 0 1

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
positions_7nt_m1_shift2 (positions_7nt_m1)																	; positions_7nt_m1; m=0 (reference); ncol1=11; shift=2; ncol=14; --vsAGGGGCCgg- ; Alignment reference a 0 0 2 1 6 0 0 0 0 0 0 1 1 0 c 0 0 2 3 0 0 0 0 0 6 6 1 1 0 g 0 0 2 2 0 6 6 6 6 0 0 4 4 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0
2588_MA0342.1_JASPAR_CORE_2009__shift4 (2588_MA0342.1_JASPAR_CORE_2009_)	0.994	0.452	8.688	0.451	0.968	0.052	0.995	1	12	2	7	1	1	1	3.571	1	; positions_7nt_m1 versus 2588_MA0342.1_JASPAR_CORE_2009_; m=1/15; ncol2=5; w=5; offset=2; strand=D; shift=4; score= 3.5714; ----AGGGG----- ; cor=0.994; Ncor=0.452; logoDP=8.688; NIcor=0.451; NsEucl=0.968; SSD=0.052; NSW=0.995; rcor=1; rNcor=12; rlogoDP=2; rNIcor=7; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=3.571; match_rank=1 a 0 0 0 0 83 0 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 16 99 99 99 99 0 0 0 0 0 t 0 0 0 0 0 0 0 0 1 0 0 0 0 0
2615_MA0381.1_JASPAR_CORE_2009__shift7 (2615_MA0381.1_JASPAR_CORE_2009_)	0.926	0.505	6.941	0.508	0.917	0.497	0.959	4	5	9	2	4	4	4	4.571	2	; positions_7nt_m1 versus 2615_MA0381.1_JASPAR_CORE_2009_; m=2/15; ncol2=6; w=6; offset=5; strand=D; shift=7; score= 4.5714; -------GGCCrk- ; cor=0.926; Ncor=0.505; logoDP=6.941; NIcor=0.508; NsEucl=0.917; SSD=0.497; NSW=0.959; rcor=4; rNcor=5; rlogoDP=9; rNIcor=2; rNsEucl=4; rSSD=4; rNSW=4; rank_mean=4.571; match_rank=2 a 0 0 0 0 0 0 0 0 0 0 0 49 21 0 c 0 0 0 0 0 0 0 0 0 100 84 15 18 0 g 0 0 0 0 0 0 0 100 100 0 16 37 28 0 t 0 0 0 0 0 0 0 0 0 0 0 0 32 0
2604_MA0366.1_JASPAR_CORE_2009__shift4 (2604_MA0366.1_JASPAR_CORE_2009_)	0.990	0.450	8.421	0.446	0.960	0.079	0.992	2	13	5	9	2	2	2	5.000	3	; positions_7nt_m1 versus 2604_MA0366.1_JASPAR_CORE_2009_; m=3/15; ncol2=5; w=5; offset=2; strand=D; shift=4; score= 5; ----AGGGG----- ; cor=0.990; Ncor=0.450; logoDP=8.421; NIcor=0.446; NsEucl=0.960; SSD=0.079; NSW=0.992; rcor=2; rNcor=13; rlogoDP=5; rNIcor=9; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=5.000; match_rank=3 a 0 0 0 0 100 0 0 0 11 0 0 0 0 0 c 0 0 0 0 0 0 0 0 12 0 0 0 0 0 g 0 0 0 0 0 100 100 100 77 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0
2587_MA0341.1_JASPAR_CORE_2009__shift4 (2587_MA0341.1_JASPAR_CORE_2009_)	0.965	0.439	8.133	0.432	0.927	0.265	0.974	3	14	7	10	3	3	3	6.143	4	; positions_7nt_m1 versus 2587_MA0341.1_JASPAR_CORE_2009_; m=4/15; ncol2=5; w=5; offset=2; strand=D; shift=4; score= 6.1429; ----rGGGG----- ; cor=0.965; Ncor=0.439; logoDP=8.133; NIcor=0.432; NsEucl=0.927; SSD=0.265; NSW=0.974; rcor=3; rNcor=14; rlogoDP=7; rNIcor=10; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=6.143; match_rank=4 a 0 0 0 0 60 0 0 0 0 0 0 0 0 0 c 0 0 0 0 7 0 0 0 0 0 0 0 0 0 g 0 0 0 0 32 100 100 100 100 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0
2602_MA0364.1_JASPAR_CORE_2009__rc_shift2 (2602_MA0364.1_JASPAR_CORE_2009__rc)	0.909	0.578	1.969	0.011	0.912	0.767	0.945	5	2	13	13	5	5	5	6.857	5	; positions_7nt_m1 versus 2602_MA0364.1_JASPAR_CORE_2009__rc; m=5/15; ncol2=7; w=7; offset=0; strand=R; shift=2; score= 6.8571; --tCAGGGG----- ; cor=0.909; Ncor=0.578; logoDP=1.969; NIcor=0.011; NsEucl=0.912; SSD=0.767; NSW=0.945; rcor=5; rNcor=2; rlogoDP=13; rNIcor=13; rNsEucl=5; rSSD=5; rNSW=5; rank_mean=6.857; match_rank=5 a 0 0 13 5 100 0 0 0 5 0 0 0 0 0 c 0 0 23 95 0 0 0 0 0 0 0 0 0 0 g 0 0 8 0 0 100 100 95 95 0 0 0 0 0 t 0 0 56 0 0 0 0 5 0 0 0 0 0 0
1714_MA0155.1_JASPAR_CORE_2009__shift0 (1714_MA0155.1_JASPAR_CORE_2009_)	0.762	0.586	8.805	0.613	0.889	2.465	0.877	14	1	1	1	6	15	11	7.000	6	; positions_7nt_m1 versus 1714_MA0155.1_JASPAR_CORE_2009_; m=6/15; ncol2=12; w=10; offset=-2; strand=D; shift=0; score= 7; TGymwGGGGkcr-- ; cor=0.762; Ncor=0.586; logoDP=8.805; NIcor=0.613; NsEucl=0.889; SSD=2.465; NSW=0.877; rcor=14; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=6; rSSD=15; rNSW=11; rank_mean=7.000; match_rank=6 a 1 0 0 6 16 0 0 0 0 0 3 10 0 0 c 0 0 8 15 0 0 1 0 0 2 16 0 0 0 g 4 20 3 0 0 24 23 24 24 16 0 12 0 0 t 19 4 13 3 8 0 0 0 0 6 5 2 0 0
7480_KLF6_si_HOCOMOCO_v9__shift6 (7480_KLF6_si_HOCOMOCO_v9_)	0.785	0.499	5.483	0.493	0.870	1.658	0.882	10	6	11	3	11	7	8	8.000	7	; positions_7nt_m1 versus 7480_KLF6_si_HOCOMOCO_v9_; m=7/15; ncol2=7; w=7; offset=4; strand=D; shift=6; score= 8; ------GGGgCkG- ; cor=0.785; Ncor=0.499; logoDP=5.483; NIcor=0.493; NsEucl=0.870; SSD=1.658; NSW=0.882; rcor=10; rNcor=6; rlogoDP=11; rNIcor=3; rNsEucl=11; rSSD=7; rNSW=8; rank_mean=8.000; match_rank=7 a 0 0 0 0 0 0 2 0 0 2 2 0 0 0 c 0 0 0 0 0 0 0 1 0 2 9 0 1 0 g 0 0 0 0 0 0 9 9 11 7 0 6 10 0 t 0 0 0 0 0 0 0 1 0 0 0 5 0 0
7492_MBD2_si_HOCOMOCO_v9__shift6 (7492_MBD2_si_HOCOMOCO_v9_)	0.829	0.414	6.288	0.375	0.881	1.380	0.901	6	15	10	12	7	6	6	8.857	8	; positions_7nt_m1 versus 7492_MBD2_si_HOCOMOCO_v9_; m=8/15; ncol2=10; w=7; offset=4; strand=D; shift=6; score= 8.8571; ------sSkCCGGm ; cor=0.829; Ncor=0.414; logoDP=6.288; NIcor=0.375; NsEucl=0.881; SSD=1.380; NSW=0.901; rcor=6; rNcor=15; rlogoDP=10; rNIcor=12; rNsEucl=7; rSSD=6; rNSW=6; rank_mean=8.857; match_rank=8 a 0 0 0 0 0 0 7 0 1 0 0 0 0 59 c 0 0 0 0 0 0 43 28 0 111 111 0 0 39 g 0 0 0 0 0 0 51 83 57 0 0 111 111 12 t 0 0 0 0 0 0 10 0 53 0 0 0 0 1
2562_MA0306.1_JASPAR_CORE_2009__rc_shift1 (2562_MA0306.1_JASPAR_CORE_2009__rc)	0.785	0.524	0.470	-0.128	0.880	1.857	0.884	9	4	14	14	8	9	7	9.286	9	; positions_7nt_m1 versus 2562_MA0306.1_JASPAR_CORE_2009__rc; m=9/15; ncol2=9; w=8; offset=-1; strand=R; shift=1; score= 9.2857; -wwwAGGGGw---- ; cor=0.785; Ncor=0.524; logoDP=0.470; NIcor=-0.128; NsEucl=0.880; SSD=1.857; NSW=0.884; rcor=9; rNcor=4; rlogoDP=14; rNIcor=14; rNsEucl=8; rSSD=9; rNSW=7; rank_mean=9.286; match_rank=9 a 0 30 27 32 100 13 0 0 3 25 0 0 0 0 c 0 18 16 15 0 0 0 0 0 12 0 0 0 0 g 0 19 11 4 0 87 100 100 97 22 0 0 0 0 t 0 32 46 49 0 0 0 0 0 41 0 0 0 0
2711_PF0024.1_JASPAR_CORE_2009__shift1 (2711_PF0024.1_JASPAR_CORE_2009_)	0.798	0.466	7.679	0.428	0.868	1.713	0.878	7	11	8	11	12	8	10	9.571	10	; positions_7nt_m1 versus 2711_PF0024.1_JASPAR_CORE_2009_; m=10/15; ncol2=8; w=7; offset=-1; strand=D; shift=1; score= 9.5714; -GGGAGGrG----- ; cor=0.798; Ncor=0.466; logoDP=7.679; NIcor=0.428; NsEucl=0.868; SSD=1.713; NSW=0.878; rcor=7; rNcor=11; rlogoDP=8; rNIcor=11; rNsEucl=12; rSSD=8; rNSW=10; rank_mean=9.571; match_rank=10 a 0 0 0 0 11176 0 0 3724 2525 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 11176 11176 11176 0 11176 11176 7452 8651 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0
7202_ATERF1_ArabidopsisPBM_20140210__shift5 (7202_ATERF1_ArabidopsisPBM_20140210_)	0.775	0.477	4.171	0.464	0.875	2.008	0.874	11	8	12	5	10	11	12	9.857	11	; positions_7nt_m1 versus 7202_ATERF1_ArabidopsisPBM_20140210_; m=11/15; ncol2=10; w=8; offset=3; strand=D; shift=5; score= 9.8571; -----GGcGsCGsC ; cor=0.775; Ncor=0.477; logoDP=4.171; NIcor=0.464; NsEucl=0.875; SSD=2.008; NSW=0.874; rcor=11; rNcor=8; rlogoDP=12; rNIcor=5; rNsEucl=10; rSSD=11; rNSW=12; rank_mean=9.857; match_rank=11 a 0 0 0 0 0 5 4 19 3 4 6 7 7 7 c 0 0 0 0 0 3 15 60 2 48 85 9 52 80 g 0 0 0 0 0 84 71 15 93 38 5 73 35 10 t 0 0 0 0 0 8 10 6 2 10 4 11 6 3
2642_MA0423.1_JASPAR_CORE_2009__rc_shift1 (2642_MA0423.1_JASPAR_CORE_2009__rc)	0.785	0.524	0.455	-0.144	0.878	1.915	0.880	8	3	15	15	9	10	9	9.857	12	; positions_7nt_m1 versus 2642_MA0423.1_JASPAR_CORE_2009__rc; m=12/15; ncol2=9; w=8; offset=-1; strand=R; shift=1; score= 9.8571; -dAwAGGGGk---- ; cor=0.785; Ncor=0.524; logoDP=0.455; NIcor=-0.144; NsEucl=0.878; SSD=1.915; NSW=0.880; rcor=8; rNcor=3; rlogoDP=15; rNIcor=15; rNsEucl=9; rSSD=10; rNSW=9; rank_mean=9.857; match_rank=12 a 0 34 75 32 100 0 0 9 2 13 0 0 0 0 c 0 5 4 8 0 0 0 0 1 23 0 0 0 0 g 0 28 0 0 0 100 100 91 97 28 0 0 0 0 t 0 32 21 60 0 0 0 0 0 35 0 0 0 0
7268_TCP23_ArabidopsisPBM_20140210__shift5 (7268_TCP23_ArabidopsisPBM_20140210_)	0.771	0.474	8.646	0.452	0.866	2.296	0.856	12	9	4	6	13	13	13	10.000	13	; positions_7nt_m1 versus 7268_TCP23_ArabidopsisPBM_20140210_; m=13/15; ncol2=10; w=8; offset=3; strand=D; shift=5; score= 10; -----GGGGCCCAC ; cor=0.771; Ncor=0.474; logoDP=8.646; NIcor=0.452; NsEucl=0.866; SSD=2.296; NSW=0.856; rcor=12; rNcor=9; rlogoDP=4; rNIcor=6; rNsEucl=13; rSSD=13; rNSW=13; rank_mean=10.000; match_rank=13 a 0 0 0 0 0 2 0 1 4 1 0 1 95 1 c 0 0 0 0 0 5 0 1 9 97 98 98 1 96 g 0 0 0 0 0 77 97 98 84 1 2 0 3 1 t 0 0 0 0 0 16 3 0 3 1 0 1 1 2
2693_PF0006.1_JASPAR_CORE_2009__shift6 (2693_PF0006.1_JASPAR_CORE_2009_)	0.761	0.484	8.413	0.478	0.850	2.210	0.842	15	7	6	4	15	12	15	10.571	14	; positions_7nt_m1 versus 2693_PF0006.1_JASPAR_CORE_2009_; m=14/15; ncol2=7; w=7; offset=4; strand=D; shift=6; score=10.5714; ------GGGCGGG- ; cor=0.761; Ncor=0.484; logoDP=8.413; NIcor=0.478; NsEucl=0.850; SSD=2.210; NSW=0.842; rcor=15; rNcor=7; rlogoDP=6; rNIcor=4; rNsEucl=15; rSSD=12; rNSW=15; rank_mean=10.571; match_rank=14 a 0 0 0 0 0 0 0 0 0 0 0 0 4149 0 c 0 0 0 0 0 0 0 0 0 18548 0 0 0 0 g 0 0 0 0 0 0 18548 18548 18548 0 18548 18548 14399 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0
7266_TCP15_ArabidopsisPBM_20140210__shift5 (7266_TCP15_ArabidopsisPBM_20140210_)	0.768	0.473	8.667	0.447	0.865	2.319	0.855	13	10	3	8	14	14	14	10.857	15	; positions_7nt_m1 versus 7266_TCP15_ArabidopsisPBM_20140210_; m=15/15; ncol2=10; w=8; offset=3; strand=D; shift=5; score=10.8571; -----GGGGCCCAC ; cor=0.768; Ncor=0.473; logoDP=8.667; NIcor=0.447; NsEucl=0.865; SSD=2.319; NSW=0.855; rcor=13; rNcor=10; rlogoDP=3; rNIcor=8; rNsEucl=14; rSSD=14; rNSW=14; rank_mean=10.857; match_rank=15 a 0 0 0 0 0 1 1 0 6 0 0 0 95 1 c 0 0 0 0 0 5 0 1 14 95 99 99 1 96 g 0 0 0 0 0 81 98 99 77 1 0 0 4 2 t 0 0 0 0 0 13 1 0 3 4 1 1 0 1