One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_footprintDB

One-to-n matrix alignment; reference matrix: positions_7nt_m2_shift4 ; 22 matrices ; sort_field=rank_mean

Matrix nameAligned logoscor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
positions_7nt_m2_shift4 (positions_7nt_m2)                                
; positions_7nt_m2; m=0 (reference); ncol1=11; shift=4; ncol=18; ----wwATATAAGkb---
; Alignment reference
a	0	0	0	0	2	3	7	0	7	0	7	7	0	0	1	0	0	0
c	0	0	0	0	1	1	0	0	0	0	0	0	0	1	2	0	0	0
g	0	0	0	0	1	1	0	0	0	0	0	0	7	3	2	0	0	0
t	0	0	0	0	3	2	0	7	0	7	0	0	0	3	2	0	0	0
2613_MA0379.1_JASPAR_CORE_2009__shift6 (2613_MA0379.1_JASPAR_CORE_2009_) 0.999 0.454 9.094 0.454 0.988 0.008 0.999 1 11 2 6 1 1 1 3.286 1
; positions_7nt_m2 versus 2613_MA0379.1_JASPAR_CORE_2009_; m=1/21; ncol2=5; w=5; offset=2; strand=D; shift=6; score= 3.2857; ------ATATA-------
; cor=0.999; Ncor=0.454; logoDP=9.094; NIcor=0.454; NsEucl=0.988; SSD=0.008; NSW=0.999; rcor=1; rNcor=11; rlogoDP=2; rNIcor=6; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=3.286; match_rank=1
a	0	0	0	0	0	0	93	0	99	0	99	0	0	0	0	0	0	0
c	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
t	0	0	0	0	0	0	5	99	0	99	0	0	0	0	0	0	0	0
6327_1tgh_A_3D-footprint_20130124__shift3 (6327_1tgh_A_3D-footprint_20130124_) 0.890 0.519 8.646 0.505 0.905 0.890 0.936 3 7 5 4 3 3 3 4.000 2
; positions_7nt_m2 versus 6327_1tgh_A_3D-footprint_20130124_; m=2/21; ncol2=8; w=7; offset=-1; strand=D; shift=3; score=      4; ---TAtATATA-------
; cor=0.890; Ncor=0.519; logoDP=8.646; NIcor=0.505; NsEucl=0.905; SSD=0.890; NSW=0.936; rcor=3; rNcor=7; rlogoDP=5; rNIcor=4; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=4.000; match_rank=2
a	0	0	0	0	96	19	76	0	96	0	96	0	0	0	0	0	0	0
c	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0
g	0	0	0	0	0	20	19	0	0	0	0	0	0	0	0	0	0	0
t	0	0	0	96	0	38	1	96	0	96	0	0	0	0	0	0	0	0
6272_1qn7_A_3D-footprint_20130124__rc_shift5 (6272_1qn7_A_3D-footprint_20130124__rc) 0.947 0.689 5.800 0.285 0.935 0.545 0.966 2 1 10 11 2 2 2 4.286 3
; positions_7nt_m2 versus 6272_1qn7_A_3D-footprint_20130124__rc; m=3/21; ncol2=8; w=8; offset=1; strand=R; shift=5; score= 4.2857; -----TATATAAG-----
; cor=0.947; Ncor=0.689; logoDP=5.800; NIcor=0.285; NsEucl=0.935; SSD=0.545; NSW=0.966; rcor=2; rNcor=1; rlogoDP=10; rNIcor=11; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=4.286; match_rank=3
a	0	0	0	0	0	8	96	0	96	0	69	96	8	0	0	0	0	0
c	0	0	0	0	0	8	0	8	0	0	8	0	8	0	0	0	0	0
g	0	0	0	0	0	8	0	0	0	0	11	0	72	0	0	0	0	0
t	0	0	0	0	0	72	0	88	0	96	8	0	8	0	0	0	0	0
2427_MA0033.1_JASPAR_CORE_2009__shift3 (2427_MA0033.1_JASPAR_CORE_2009_) 0.854 0.498 4.621 0.481 0.895 1.090 0.922 4 8 11 5 4 4 4 5.714 4
; positions_7nt_m2 versus 2427_MA0033.1_JASPAR_CORE_2009_; m=4/21; ncol2=8; w=7; offset=-1; strand=D; shift=3; score= 5.7143; ---wwdayATA-------
; cor=0.854; Ncor=0.498; logoDP=4.621; NIcor=0.481; NsEucl=0.895; SSD=1.090; NSW=0.922; rcor=4; rNcor=8; rlogoDP=11; rNIcor=5; rNsEucl=4; rSSD=4; rNSW=4; rank_mean=5.714; match_rank=4
a	0	0	0	7	10	6	13	4	21	0	22	0	0	0	0	0	0	0
c	0	0	0	1	4	3	4	10	0	2	1	0	0	0	0	0	0	0
g	0	0	0	4	2	6	4	2	2	0	0	0	0	0	0	0	0	0
t	0	0	0	11	7	8	2	7	0	21	0	0	0	0	0	0	0	0
6359_1ytf_A_3D-footprint_20130124__shift1 (6359_1ytf_A_3D-footprint_20130124_) 0.853 0.427 8.224 0.397 0.885 1.306 0.907 5 12 6 8 9 6 6 7.429 5
; positions_7nt_m2 versus 6359_1ytf_A_3D-footprint_20130124_; m=5/21; ncol2=10; w=7; offset=-3; strand=D; shift=1; score= 7.4286; -GTTTTATATA-------
; cor=0.853; Ncor=0.427; logoDP=8.224; NIcor=0.397; NsEucl=0.885; SSD=1.306; NSW=0.907; rcor=5; rNcor=12; rlogoDP=6; rNIcor=8; rNsEucl=9; rSSD=6; rNSW=6; rank_mean=7.429; match_rank=5
a	0	9	0	11	0	0	67	0	96	0	96	0	0	0	0	0	0	0
c	0	9	0	9	0	0	9	0	0	0	0	0	0	0	0	0	0	0
g	0	69	0	9	0	0	11	0	0	0	0	0	0	0	0	0	0	0
t	0	9	96	67	96	96	9	96	0	96	0	0	0	0	0	0	0	0
6360_1ytf_AC_3D-footprint_20130124__shift1 (6360_1ytf_AC_3D-footprint_20130124_) 0.853 0.427 8.224 0.397 0.885 1.306 0.907 5 12 6 8 9 6 6 7.429 6
; positions_7nt_m2 versus 6360_1ytf_AC_3D-footprint_20130124_; m=6/21; ncol2=10; w=7; offset=-3; strand=D; shift=1; score= 7.4286; -GTTTTATATA-------
; cor=0.853; Ncor=0.427; logoDP=8.224; NIcor=0.397; NsEucl=0.885; SSD=1.306; NSW=0.907; rcor=5; rNcor=12; rlogoDP=6; rNIcor=8; rNsEucl=9; rSSD=6; rNSW=6; rank_mean=7.429; match_rank=6
a	0	9	0	9	0	0	67	0	96	0	96	0	0	0	0	0	0	0
c	0	9	0	9	0	0	9	0	0	0	0	0	0	0	0	0	0	0
g	0	69	0	11	0	0	11	0	0	0	0	0	0	0	0	0	0	0
t	0	9	96	67	96	96	9	96	0	96	0	0	0	0	0	0	0	0
6725_4aik_A_3D-footprint_20130124__shift5 (6725_4aik_A_3D-footprint_20130124_) 0.829 0.528 6.685 0.509 0.879 1.423 0.898 8 6 9 3 11 10 8 7.857 7
; positions_7nt_m2 versus 6725_4aik_A_3D-footprint_20130124_; m=7/21; ncol2=7; w=7; offset=1; strand=D; shift=5; score= 7.8571; -----CATAnAA------
; cor=0.829; Ncor=0.528; logoDP=6.685; NIcor=0.509; NsEucl=0.879; SSD=1.423; NSW=0.898; rcor=8; rNcor=6; rlogoDP=9; rNIcor=3; rNsEucl=11; rSSD=10; rNSW=8; rank_mean=7.857; match_rank=7
a	0	0	0	0	0	11	69	0	96	24	67	96	0	0	0	0	0	0
c	0	0	0	0	0	67	9	0	0	24	11	0	0	0	0	0	0	0
g	0	0	0	0	0	9	9	0	0	24	9	0	0	0	0	0	0	0
t	0	0	0	0	0	9	9	96	0	24	9	0	0	0	0	0	0	0
2713_PF0026.1_JASPAR_CORE_2009__shift4 (2713_PF0026.1_JASPAR_CORE_2009_) 0.799 0.581 8.896 0.530 0.877 1.940 0.879 12 3 4 1 14 16 14 9.143 8
; positions_7nt_m2 versus 2713_PF0026.1_JASPAR_CORE_2009_; m=8/21; ncol2=8; w=8; offset=0; strand=D; shift=4; score= 9.1429; ----TTAyrTAA------
; cor=0.799; Ncor=0.581; logoDP=8.896; NIcor=0.530; NsEucl=0.877; SSD=1.940; NSW=0.879; rcor=12; rNcor=3; rlogoDP=4; rNIcor=1; rNsEucl=14; rSSD=16; rNSW=14; rank_mean=9.143; match_rank=8
a	0	0	0	0	0	0	680	0	375	0	680	680	0	0	0	0	0	0
c	0	0	0	0	0	0	0	286	0	0	0	0	0	0	0	0	0	0
g	0	0	0	0	0	0	0	0	305	0	0	0	0	0	0	0	0	0
t	0	0	0	0	680	680	0	394	0	680	0	0	0	0	0	0	0	0
6276_1qnb_A_3D-footprint_20130124__rc_shift7 (6276_1qnb_A_3D-footprint_20130124__rc) 0.818 0.595 2.306 0.010 0.885 1.698 0.894 9 2 14 16 7 13 10 10.143 9
; positions_7nt_m2 versus 6276_1qnb_A_3D-footprint_20130124__rc; m=9/21; ncol2=8; w=8; offset=3; strand=R; shift=7; score=10.1429; -------TATAAmTs---
; cor=0.818; Ncor=0.595; logoDP=2.306; NIcor=0.010; NsEucl=0.885; SSD=1.698; NSW=0.894; rcor=9; rNcor=2; rlogoDP=14; rNIcor=16; rNsEucl=7; rSSD=13; rNSW=10; rank_mean=10.143; match_rank=9
a	0	0	0	0	0	0	0	0	96	0	96	96	48	0	12	0	0	0
c	0	0	0	0	0	0	0	0	0	0	0	0	24	0	24	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	12	0	48	0	0	0
t	0	0	0	0	0	0	0	96	0	96	0	0	12	96	12	0	0	0
6246_1osl_A_3D-footprint_20130124__rc_shift8 (6246_1osl_A_3D-footprint_20130124__rc) 0.839 0.489 0.367 -0.142 0.885 1.302 0.907 7 9 20 20 8 5 5 10.571 10
; positions_7nt_m2 versus 6246_1osl_A_3D-footprint_20130124__rc; m=10/21; ncol2=8; w=7; offset=4; strand=R; shift=8; score=10.5714; --------ATAAGAta--
; cor=0.839; Ncor=0.489; logoDP=0.367; NIcor=-0.142; NsEucl=0.885; SSD=1.302; NSW=0.907; rcor=7; rNcor=9; rlogoDP=20; rNIcor=20; rNsEucl=8; rSSD=5; rNSW=5; rank_mean=10.571; match_rank=10
a	0	0	0	0	0	0	0	0	96	0	96	96	6	84	6	54	0	0
c	0	0	0	0	0	0	0	0	0	0	0	0	6	6	16	16	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	78	6	13	13	0	0
t	0	0	0	0	0	0	0	0	0	96	0	0	6	0	61	13	0	0
2814_PF0127.1_JASPAR_CORE_2009__shift7 (2814_PF0127.1_JASPAR_CORE_2009_) 0.783 0.570 9.022 0.518 0.872 2.109 0.868 14 5 3 2 15 18 17 10.571 11
; positions_7nt_m2 versus 2814_PF0127.1_JASPAR_CORE_2009_; m=11/21; ncol2=8; w=8; offset=3; strand=D; shift=7; score=10.5714; -------wwTAAGGC---
; cor=0.783; Ncor=0.570; logoDP=9.022; NIcor=0.518; NsEucl=0.872; SSD=2.109; NSW=0.868; rcor=14; rNcor=5; rlogoDP=3; rNIcor=2; rNsEucl=15; rSSD=18; rNSW=17; rank_mean=10.571; match_rank=11
a	0	0	0	0	0	0	0	156	195	0	452	452	0	0	0	0	0	0
c	0	0	0	0	0	0	0	0	0	0	0	0	0	0	452	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	452	452	0	0	0	0
t	0	0	0	0	0	0	0	296	257	452	0	0	0	0	0	0	0	0
6724_4aij_AB_3D-footprint_20130124__rc_shift7 (6724_4aij_AB_3D-footprint_20130124__rc) 0.803 0.401 1.286 0.138 0.886 1.653 0.897 11 21 17 14 6 12 9 12.857 12
; positions_7nt_m2 versus 6724_4aij_AB_3D-footprint_20130124__rc; m=12/21; ncol2=13; w=8; offset=3; strand=R; shift=7; score=12.8571; -------TATAnnnnTTG
; cor=0.803; Ncor=0.401; logoDP=1.286; NIcor=0.138; NsEucl=0.886; SSD=1.653; NSW=0.897; rcor=11; rNcor=21; rlogoDP=17; rNIcor=14; rNsEucl=6; rSSD=12; rNSW=9; rank_mean=12.857; match_rank=12
a	0	0	0	0	0	0	0	0	96	0	96	24	24	24	24	9	9	0
c	0	0	0	0	0	0	0	0	0	0	0	24	24	24	24	11	9	0
g	0	0	0	0	0	0	0	0	0	0	0	24	24	24	24	9	11	96
t	0	0	0	0	0	0	0	96	0	96	0	24	24	24	24	67	67	0
2595_MA0356.1_JASPAR_CORE_2009__rc_shift4 (2595_MA0356.1_JASPAR_CORE_2009__rc) 0.769 0.419 3.043 0.146 0.865 1.311 0.891 17 16 13 13 17 8 11 13.571 13
; positions_7nt_m2 versus 2595_MA0356.1_JASPAR_CORE_2009__rc; m=13/21; ncol2=6; w=6; offset=0; strand=R; shift=4; score=13.5714; ----wAwTAw--------
; cor=0.769; Ncor=0.419; logoDP=3.043; NIcor=0.146; NsEucl=0.865; SSD=1.311; NSW=0.891; rcor=17; rNcor=16; rlogoDP=13; rNIcor=13; rNsEucl=17; rSSD=8; rNSW=11; rank_mean=13.571; match_rank=13
a	0	0	0	0	37	77	44	0	88	41	0	0	0	0	0	0	0	0
c	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
t	0	0	0	0	63	23	56	100	12	52	0	0	0	0	0	0	0	0
6270_1qn5_A_3D-footprint_20130124__rc_shift7 (6270_1qn5_A_3D-footprint_20130124__rc) 0.797 0.580 0.345 -0.179 0.879 1.870 0.883 13 4 21 21 12 14 12 13.857 14
; positions_7nt_m2 versus 6270_1qn5_A_3D-footprint_20130124__rc; m=14/21; ncol2=8; w=8; offset=3; strand=R; shift=7; score=13.8571; -------TATAAGAG---
; cor=0.797; Ncor=0.580; logoDP=0.345; NIcor=-0.179; NsEucl=0.879; SSD=1.870; NSW=0.883; rcor=13; rNcor=4; rlogoDP=21; rNIcor=21; rNsEucl=12; rSSD=14; rNSW=12; rank_mean=13.857; match_rank=14
a	0	0	0	0	0	0	0	9	96	0	96	96	9	96	9	0	0	0
c	0	0	0	0	0	0	0	9	0	0	0	0	11	0	9	0	0	0
g	0	0	0	0	0	0	0	11	0	0	0	0	67	0	67	0	0	0
t	0	0	0	0	0	0	0	67	0	96	0	0	9	0	11	0	0	0
2738_PF0051.1_JASPAR_CORE_2009__shift7 (2738_PF0051.1_JASPAR_CORE_2009_) 0.778 0.424 9.609 0.424 0.833 2.000 0.833 16 15 1 7 21 17 21 14.000 15
; positions_7nt_m2 versus 2738_PF0051.1_JASPAR_CORE_2009_; m=15/21; ncol2=6; w=6; offset=3; strand=D; shift=7; score=     14; -------TATAAA-----
; cor=0.778; Ncor=0.424; logoDP=9.609; NIcor=0.424; NsEucl=0.833; SSD=2.000; NSW=0.833; rcor=16; rNcor=15; rlogoDP=1; rNIcor=7; rNsEucl=21; rSSD=17; rNSW=21; rank_mean=14.000; match_rank=15
a	0	0	0	0	0	0	0	0	4688	0	4688	4688	4688	0	0	0	0	0
c	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
t	0	0	0	0	0	0	0	4688	0	4688	0	0	0	0	0	0	0	0
2509_MA0124.1_JASPAR_CORE_2009__rc_shift9 (2509_MA0124.1_JASPAR_CORE_2009__rc) 0.808 0.404 2.199 0.041 0.860 1.421 0.882 10 20 15 15 19 9 13 14.429 16
; positions_7nt_m2 versus 2509_MA0124.1_JASPAR_CORE_2009__rc; m=16/21; ncol2=7; w=6; offset=5; strand=R; shift=9; score=14.4286; ---------TAAGTAt--
; cor=0.808; Ncor=0.404; logoDP=2.199; NIcor=0.041; NsEucl=0.860; SSD=1.421; NSW=0.882; rcor=10; rNcor=20; rlogoDP=15; rNIcor=15; rNsEucl=19; rSSD=9; rNSW=13; rank_mean=14.429; match_rank=16
a	0	0	0	0	0	0	0	0	0	0	19	19	1	0	19	3	0	0
c	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	19	0	1	1	0	0
t	0	0	0	0	0	0	0	0	0	19	1	1	0	20	0	13	0	0
6236_1nvp_AC_3D-footprint_20130124__rc_shift1 (6236_1nvp_AC_3D-footprint_20130124__rc) 0.761 0.489 4.213 0.209 0.878 2.398 0.867 19 10 12 12 13 20 19 15.000 17
; positions_7nt_m2 versus 6236_1nvp_AC_3D-footprint_20130124__rc; m=17/21; ncol2=12; w=9; offset=-3; strand=R; shift=1; score=     15; -GGnnTATAAAAG-----
; cor=0.761; Ncor=0.489; logoDP=4.213; NIcor=0.209; NsEucl=0.878; SSD=2.398; NSW=0.867; rcor=19; rNcor=10; rlogoDP=12; rNIcor=12; rNsEucl=13; rSSD=20; rNSW=19; rank_mean=15.000; match_rank=17
a	0	6	3	24	24	3	96	3	96	84	76	96	3	0	0	0	0	0
c	0	3	3	24	24	6	0	3	0	3	7	0	15	0	0	0	0	0
g	0	80	87	24	24	3	0	6	0	3	7	0	72	0	0	0	0	0
t	0	7	3	24	24	84	0	84	0	6	6	0	6	0	0	0	0	0
6637_3jxb_CD_3D-footprint_20130124__rc_shift5 (6637_3jxb_CD_3D-footprint_20130124__rc) 0.752 0.418 2.027 0.002 0.888 2.523 0.874 20 17 16 17 5 21 15 15.857 18
; positions_7nt_m2 versus 6637_3jxb_CD_3D-footprint_20130124__rc; m=18/21; ncol2=17; w=10; offset=1; strand=R; shift=5; score=15.8571; -----TATTTAAGnnnnC
; cor=0.752; Ncor=0.418; logoDP=2.027; NIcor=0.002; NsEucl=0.888; SSD=2.523; NSW=0.874; rcor=20; rNcor=17; rlogoDP=16; rNIcor=17; rNsEucl=5; rSSD=21; rNSW=15; rank_mean=15.857; match_rank=18
a	0	0	0	0	0	3	85	10	5	3	96	96	4	24	24	24	24	1
c	0	0	0	0	0	5	5	7	3	9	0	0	0	24	24	24	24	92
g	0	0	0	0	0	3	3	8	3	3	0	0	92	24	24	24	24	0
t	0	0	0	0	0	85	3	71	85	81	0	0	0	24	24	24	24	3
2715_PF0028.1_JASPAR_CORE_2009__shift2 (2715_PF0028.1_JASPAR_CORE_2009_) 0.751 0.404 6.877 0.370 0.860 1.922 0.863 21 19 8 10 18 15 20 15.857 19
; positions_7nt_m2 versus 2715_PF0028.1_JASPAR_CORE_2009_; m=19/21; ncol2=9; w=7; offset=-2; strand=D; shift=2; score=15.8571; --CTAwwwATA-------
; cor=0.751; Ncor=0.404; logoDP=6.877; NIcor=0.370; NsEucl=0.860; SSD=1.922; NSW=0.863; rcor=21; rNcor=19; rlogoDP=8; rNIcor=10; rNsEucl=18; rSSD=15; rNSW=20; rank_mean=15.857; match_rank=19
a	0	0	0	0	1356	605	896	881	1356	0	1356	0	0	0	0	0	0	0
c	0	0	1356	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
t	0	0	0	1356	0	751	460	475	0	1356	0	0	0	0	0	0	0	0
6434_2h7h_A_3D-footprint_20130124__rc_shift8 (6434_2h7h_A_3D-footprint_20130124__rc) 0.779 0.425 0.553 -0.053 0.852 1.576 0.869 15 14 19 19 20 11 16 16.286 20
; positions_7nt_m2 versus 6434_2h7h_A_3D-footprint_20130124__rc; m=20/21; ncol2=6; w=6; offset=4; strand=R; shift=8; score=16.2857; --------ATGAGT----
; cor=0.779; Ncor=0.425; logoDP=0.553; NIcor=-0.053; NsEucl=0.852; SSD=1.576; NSW=0.869; rcor=15; rNcor=14; rlogoDP=19; rNIcor=19; rNsEucl=20; rSSD=11; rNSW=16; rank_mean=16.286; match_rank=20
a	0	0	0	0	0	0	0	0	69	0	11	96	0	9	0	0	0	0
c	0	0	0	0	0	0	0	0	9	0	9	0	0	9	0	0	0	0
g	0	0	0	0	0	0	0	0	9	0	67	0	96	11	0	0	0	0
t	0	0	0	0	0	0	0	0	9	96	9	0	0	67	0	0	0	0
6358_1ytb_A_3D-footprint_20130124__rc_shift0 (6358_1ytb_A_3D-footprint_20130124__rc) 0.766 0.409 0.658 -0.044 0.872 2.110 0.868 18 18 18 18 16 19 18 17.857 21
; positions_7nt_m2 versus 6358_1ytb_A_3D-footprint_20130124__rc; m=21/21; ncol2=12; w=8; offset=-4; strand=R; shift=0; score=17.8571; CGnnTTATaTAc------
; cor=0.766; Ncor=0.409; logoDP=0.658; NIcor=-0.044; NsEucl=0.872; SSD=2.110; NSW=0.868; rcor=18; rNcor=18; rlogoDP=18; rNIcor=18; rNsEucl=16; rSSD=19; rNSW=18; rank_mean=17.857; match_rank=21
a	0	0	24	24	0	8	96	0	64	0	88	16	0	0	0	0	0	0
c	96	0	24	24	0	8	0	0	16	0	8	64	0	0	0	0	0	0
g	0	96	24	24	0	8	0	0	8	0	0	8	0	0	0	0	0	0
t	0	0	24	24	96	72	0	96	8	96	0	8	0	0	0	0	0	0