One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_7nt_m3/peak-motifs_positions_7nt_m3.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_7nt_m3/peak-motifs_positions_7nt_m3_vs_db_footprintDB

One-to-n matrix alignment; reference matrix: positions_7nt_m3_shift3 ; 14 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
positions_7nt_m3_shift3 (positions_7nt_m3)
; positions_7nt_m3; m=0 (reference); ncol1=11; shift=3; ncol=15; ---sgCTCAGGCgr- ; Alignment reference a 0 0 0 1 2 0 0 0 10 0 0 0 2 3 0 c 0 0 0 4 2 10 0 10 0 0 0 10 2 2 0 g 0 0 0 4 6 0 0 0 0 10 10 0 5 5 0 t 0 0 0 1 0 0 10 0 0 0 0 0 1 0 0

5875_TFAP2B_DBD_2_HumanTF_1.0__shift2 (5875_TFAP2B_DBD_2_HumanTF_1.0_) 0.785 0.654 7.834 0.607 0.894 2.240 0.888 6 1 1 1 6 9 9 4.714 1
; positions_7nt_m3 versus 5875_TFAP2B_DBD_2_HumanTF_1.0_; m=1/13; ncol2=11; w=10; offset=-1; strand=D; shift=2; score= 4.7143; --mGCCysAGGCd-- ; cor=0.785; Ncor=0.654; logoDP=7.834; NIcor=0.607; NsEucl=0.894; SSD=2.240; NSW=0.888; rcor=6; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=6; rSSD=9; rNSW=9; rank_mean=4.714; match_rank=1 a 0 0 1784 36 0 0 16 576 3480 235 6 47 1822 0 0 c 0 0 1412 609 4549 4549 1204 2126 608 4 10 4250 371 0 0 g 0 0 232 3940 4 1 612 1498 446 4549 4549 299 1149 0 0 t 0 0 1121 30 0 158 2716 348 14 2 1 25 1207 0 0

5902_Tcfap2a_DBD_2_HumanTF_1.0__shift2 (5902_Tcfap2a_DBD_2_HumanTF_1.0_) 0.785 0.654 7.151 0.606 0.895 2.209 0.890 7 2 2 2 5 8 8 4.857 2
; positions_7nt_m3 versus 5902_Tcfap2a_DBD_2_HumanTF_1.0_; m=2/13; ncol2=11; w=10; offset=-1; strand=D; shift=2; score= 4.8571; --mGCCysAGGCd-- ; cor=0.785; Ncor=0.654; logoDP=7.151; NIcor=0.606; NsEucl=0.895; SSD=2.209; NSW=0.890; rcor=7; rNcor=2; rlogoDP=2; rNIcor=2; rNsEucl=5; rSSD=8; rNSW=8; rank_mean=4.857; match_rank=2 a 0 0 865 0 0 0 0 144 1714 98 0 0 823 0 0 c 0 0 915 347 2439 2439 766 1269 368 94 164 2299 181 0 0 g 0 0 171 2092 88 79 287 909 340 2439 2439 140 616 0 0 t 0 0 488 49 0 96 1387 117 17 0 0 0 820 0 0

6491_2pe5_C_3D-footprint_20130124__shift4 (6491_2pe5_C_3D-footprint_20130124_) 0.951 0.432 4.678 0.421 0.915 0.362 0.964 1 11 10 9 1 1 1 4.857 3
; positions_7nt_m3 versus 6491_2pe5_C_3D-footprint_20130124_; m=3/13; ncol2=5; w=5; offset=1; strand=D; shift=4; score= 4.8571; ----gcTCA------ ; cor=0.951; Ncor=0.432; logoDP=4.678; NIcor=0.421; NsEucl=0.915; SSD=0.362; NSW=0.964; rcor=1; rNcor=11; rlogoDP=10; rNIcor=9; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=4.857; match_rank=3 a 0 0 0 0 16 8 0 0 72 0 0 0 0 0 0 c 0 0 0 0 8 56 0 96 8 0 0 0 0 0 0 g 0 0 0 0 56 16 0 0 8 0 0 0 0 0 0 t 0 0 0 0 16 16 96 0 8 0 0 0 0 0 0

5872_TFAP2A_DBD_2_HumanTF_1.0__shift2 (5872_TFAP2A_DBD_2_HumanTF_1.0_) 0.783 0.652 6.662 0.600 0.895 2.201 0.890 8 3 5 3 4 7 7 5.286 4
; positions_7nt_m3 versus 5872_TFAP2A_DBD_2_HumanTF_1.0_; m=4/13; ncol2=11; w=10; offset=-1; strand=D; shift=2; score= 5.2857; --hGCCysAGGCw-- ; cor=0.783; Ncor=0.652; logoDP=6.662; NIcor=0.600; NsEucl=0.895; SSD=2.201; NSW=0.890; rcor=8; rNcor=3; rlogoDP=5; rNIcor=3; rNsEucl=4; rSSD=7; rNSW=7; rank_mean=5.286; match_rank=4 a 0 0 1706 137 0 0 33 575 3640 1012 0 31 1865 0 0 c 0 0 1939 968 5309 5309 1646 2682 995 224 31 4726 798 0 0 g 0 0 277 4340 139 11 658 1613 618 5309 5309 582 1295 0 0 t 0 0 1386 47 0 281 2972 438 56 0 0 21 1350 0 0

7566_PAX5_si_HOCOMOCO_v9__rc_shift4 (7566_PAX5_si_HOCOMOCO_v9__rc) 0.843 0.537 6.019 0.430 0.882 1.355 0.903 3 10 7 8 11 3 3 6.429 5
; positions_7nt_m3 versus 7566_PAX5_si_HOCOMOCO_v9__rc; m=5/13; ncol2=7; w=7; offset=1; strand=R; shift=4; score= 6.4286; ----cCTCAGc---- ; cor=0.843; Ncor=0.537; logoDP=6.019; NIcor=0.430; NsEucl=0.882; SSD=1.355; NSW=0.903; rcor=3; rNcor=10; rlogoDP=7; rNIcor=8; rNsEucl=11; rSSD=3; rNSW=3; rank_mean=6.429; match_rank=5 a 0 0 0 0 577 0 0 0 3025 155 0 0 0 0 0 c 0 0 0 0 1369 2524 0 3156 131 21 2012 0 0 0 0 g 0 0 0 0 783 35 13 0 0 2958 632 0 0 0 0 t 0 0 0 0 427 597 3143 0 0 22 512 0 0 0 0

3725_UP00028_UniPROBE_20120919__rc_shift0 (3725_UP00028_UniPROBE_20120919__rc) 0.765 0.561 6.752 0.492 0.900 2.415 0.890 10 8 3 7 2 11 5 6.571 6
; positions_7nt_m3 versus 3725_UP00028_UniPROBE_20120919__rc; m=6/13; ncol2=15; w=11; offset=-3; strand=R; shift=0; score= 6.5714; wthSCCysrGGSdww ; cor=0.765; Ncor=0.561; logoDP=6.752; NIcor=0.492; NsEucl=0.900; SSD=2.415; NSW=0.890; rcor=10; rNcor=8; rlogoDP=3; rNIcor=7; rNsEucl=2; rSSD=11; rNSW=5; rank_mean=6.571; match_rank=6 a 28 15 25 1 1 0 0 5 0.59 0.03 1 2 35 33 30 c 24 14 33 27 98 0.96 0.28 55 0.12 0.01 1 70 7 19 16 g 22 15 9 70 1 0.01 0.12 38 0.28 0.96 98 27 29 22 17 t 26 56 33 2 0 0.03 0.59 2 0 0 0 1 29 26 37

6022_1cjg_A_3D-footprint_20130124__shift4 (6022_1cjg_A_3D-footprint_20130124_) 0.900 0.409 3.648 0.375 0.889 0.612 0.939 2 13 11 11 9 2 2 7.143 7
; positions_7nt_m3 versus 6022_1cjg_A_3D-footprint_20130124_; m=7/13; ncol2=5; w=5; offset=1; strand=D; shift=4; score= 7.1429; ----GCTcA------ ; cor=0.900; Ncor=0.409; logoDP=3.648; NIcor=0.375; NsEucl=0.889; SSD=0.612; NSW=0.939; rcor=2; rNcor=13; rlogoDP=11; rNIcor=11; rNsEucl=9; rSSD=2; rNSW=2; rank_mean=7.143; match_rank=7 a 0 0 0 0 0 0 8 10 72 0 0 0 0 0 0 c 0 0 0 0 0 96 8 61 8 0 0 0 0 0 0 g 0 0 0 0 96 0 11 8 8 0 0 0 0 0 0 t 0 0 0 0 0 0 69 17 8 0 0 0 0 0 0

1944_PB0088.1_JASPAR_CORE_2009__rc_shift0 (1944_PB0088.1_JASPAR_CORE_2009__rc) 0.764 0.561 6.657 0.495 0.900 2.419 0.890 11 9 6 6 3 12 6 7.571 8
; positions_7nt_m3 versus 1944_PB0088.1_JASPAR_CORE_2009__rc; m=8/13; ncol2=15; w=11; offset=-3; strand=R; shift=0; score= 7.5714; wtySCCysrGGSdww ; cor=0.764; Ncor=0.561; logoDP=6.657; NIcor=0.495; NsEucl=0.900; SSD=2.419; NSW=0.890; rcor=11; rNcor=9; rlogoDP=6; rNIcor=6; rNsEucl=3; rSSD=12; rNSW=6; rank_mean=7.571; match_rank=8 a 27 15 24 1 1 0 0 5 59 3 1 2 35 33 29 c 24 14 33 27 98 96 28 54 12 1 1 70 7 19 16 g 22 15 9 70 1 1 12 38 28 96 98 27 28 21 17 t 26 56 33 2 1 3 59 2 0 0 1 1 29 26 37

7295_AP2A_f2_HOCOMOCO_v9__rc_shift3 (7295_AP2A_f2_HOCOMOCO_v9__rc) 0.802 0.584 2.399 -0.007 0.884 1.718 0.893 4 6 13 13 10 5 4 7.857 9
; positions_7nt_m3 versus 7295_AP2A_f2_HOCOMOCO_v9__rc; m=9/13; ncol2=8; w=8; offset=0; strand=R; shift=3; score= 7.8571; ---sCCyCaGG---- ; cor=0.802; Ncor=0.584; logoDP=2.399; NIcor=-0.007; NsEucl=0.884; SSD=1.718; NSW=0.893; rcor=4; rNcor=6; rlogoDP=13; rNIcor=13; rNsEucl=10; rSSD=5; rNSW=4; rank_mean=7.857; match_rank=9 a 0 0 0 70 4 9 70 187 1276 74 30 0 0 0 0 c 0 0 0 698 1859 1746 742 1742 169 81 97 0 0 0 0 g 0 0 0 1036 29 30 297 0 419 1749 1790 0 0 0 0 t 0 0 0 126 38 145 821 1 66 26 13 0 0 0 0

5878_TFAP2C_DBD_2_HumanTF_1.0__shift2 (5878_TFAP2C_DBD_2_HumanTF_1.0_) 0.762 0.635 6.738 0.583 0.890 2.421 0.879 12 4 4 4 8 13 12 8.143 10
; positions_7nt_m3 versus 5878_TFAP2C_DBD_2_HumanTF_1.0_; m=10/13; ncol2=11; w=10; offset=-1; strand=D; shift=2; score= 8.1429; --hGCCtsAGGCw-- ; cor=0.762; Ncor=0.635; logoDP=6.738; NIcor=0.583; NsEucl=0.890; SSD=2.421; NSW=0.879; rcor=12; rNcor=4; rlogoDP=4; rNIcor=4; rNsEucl=8; rSSD=13; rNSW=12; rank_mean=8.143; match_rank=10 a 0 0 2750 159 0 3 148 1124 5725 1038 0 127 3008 0 0 c 0 0 2292 836 7757 7757 1751 2896 837 85 108 7064 509 0 0 g 0 0 566 6921 148 33 1117 2871 1139 7757 7757 694 1870 0 0 t 0 0 2150 71 0 595 4740 867 56 17 0 97 2370 0 0

5882_TFAP2C_full_3_HumanTF_1.0__shift2 (5882_TFAP2C_full_3_HumanTF_1.0_) 0.757 0.631 5.039 0.573 0.890 2.405 0.880 13 5 9 5 7 10 11 8.571 11
; positions_7nt_m3 versus 5882_TFAP2C_full_3_HumanTF_1.0_; m=11/13; ncol2=11; w=10; offset=-1; strand=D; shift=2; score= 8.5714; --wGCCysAGGCw-- ; cor=0.757; Ncor=0.631; logoDP=5.039; NIcor=0.573; NsEucl=0.890; SSD=2.405; NSW=0.880; rcor=13; rNcor=5; rlogoDP=9; rNIcor=5; rNsEucl=7; rSSD=10; rNSW=11; rank_mean=8.571; match_rank=11 a 0 0 382 0 0 11 44 172 741 106 0 21 398 0 0 c 0 0 245 251 1026 1026 272 446 110 210 220 953 91 0 0 g 0 0 123 775 18 5 131 319 135 1026 1026 73 213 0 0 t 0 0 276 13 0 37 580 89 41 162 69 2 324 0 0

7297_AP2C_f1_HOCOMOCO_v9__rc_shift3 (7297_AP2C_f1_HOCOMOCO_v9__rc) 0.785 0.571 2.819 -0.001 0.879 1.877 0.883 5 7 12 12 12 6 10 9.143 12
; positions_7nt_m3 versus 7297_AP2C_f1_HOCOMOCO_v9__rc; m=12/13; ncol2=8; w=8; offset=0; strand=R; shift=3; score= 9.1429; ---sCCyCAGG---- ; cor=0.785; Ncor=0.571; logoDP=2.819; NIcor=-0.001; NsEucl=0.879; SSD=1.877; NSW=0.883; rcor=5; rNcor=7; rlogoDP=12; rNIcor=12; rNsEucl=12; rSSD=6; rNSW=10; rank_mean=9.143; match_rank=12 a 0 0 0 59 2 1 59 170 1166 6 25 0 0 0 0 c 0 0 0 571 1564 1282 629 1416 36 1 1 0 0 0 0 g 0 0 0 893 1 1 330 0 381 1567 1572 0 0 0 0 t 0 0 0 76 32 315 581 13 16 25 1 0 0 0 0

6517_2wbs_A_3D-footprint_20130124__shift8 (6517_2wbs_A_3D-footprint_20130124_) 0.766 0.418 5.958 0.398 0.853 1.560 0.870 9 12 8 10 13 4 13 9.857 13
; positions_7nt_m3 versus 6517_2wbs_A_3D-footprint_20130124_; m=13/13; ncol2=6; w=6; offset=5; strand=D; shift=8; score= 9.8571; --------aGGCGC- ; cor=0.766; Ncor=0.418; logoDP=5.958; NIcor=0.398; NsEucl=0.853; SSD=1.560; NSW=0.870; rcor=9; rNcor=12; rlogoDP=8; rNIcor=10; rNsEucl=13; rSSD=4; rNSW=13; rank_mean=9.857; match_rank=13 a 0 0 0 0 0 0 0 0 38 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 20 0 0 96 0 76 0 g 0 0 0 0 0 0 0 0 19 96 96 0 96 0 0 t 0 0 0 0 0 0 0 0 19 0 0 0 0 20 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
positions_7nt_m3_shift3 (positions_7nt_m3)																	; positions_7nt_m3; m=0 (reference); ncol1=11; shift=3; ncol=15; ---sgCTCAGGCgr- ; Alignment reference a 0 0 0 1 2 0 0 0 10 0 0 0 2 3 0 c 0 0 0 4 2 10 0 10 0 0 0 10 2 2 0 g 0 0 0 4 6 0 0 0 0 10 10 0 5 5 0 t 0 0 0 1 0 0 10 0 0 0 0 0 1 0 0
5875_TFAP2B_DBD_2_HumanTF_1.0__shift2 (5875_TFAP2B_DBD_2_HumanTF_1.0_)	0.785	0.654	7.834	0.607	0.894	2.240	0.888	6	1	1	1	6	9	9	4.714	1	; positions_7nt_m3 versus 5875_TFAP2B_DBD_2_HumanTF_1.0_; m=1/13; ncol2=11; w=10; offset=-1; strand=D; shift=2; score= 4.7143; --mGCCysAGGCd-- ; cor=0.785; Ncor=0.654; logoDP=7.834; NIcor=0.607; NsEucl=0.894; SSD=2.240; NSW=0.888; rcor=6; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=6; rSSD=9; rNSW=9; rank_mean=4.714; match_rank=1 a 0 0 1784 36 0 0 16 576 3480 235 6 47 1822 0 0 c 0 0 1412 609 4549 4549 1204 2126 608 4 10 4250 371 0 0 g 0 0 232 3940 4 1 612 1498 446 4549 4549 299 1149 0 0 t 0 0 1121 30 0 158 2716 348 14 2 1 25 1207 0 0
5902_Tcfap2a_DBD_2_HumanTF_1.0__shift2 (5902_Tcfap2a_DBD_2_HumanTF_1.0_)	0.785	0.654	7.151	0.606	0.895	2.209	0.890	7	2	2	2	5	8	8	4.857	2	; positions_7nt_m3 versus 5902_Tcfap2a_DBD_2_HumanTF_1.0_; m=2/13; ncol2=11; w=10; offset=-1; strand=D; shift=2; score= 4.8571; --mGCCysAGGCd-- ; cor=0.785; Ncor=0.654; logoDP=7.151; NIcor=0.606; NsEucl=0.895; SSD=2.209; NSW=0.890; rcor=7; rNcor=2; rlogoDP=2; rNIcor=2; rNsEucl=5; rSSD=8; rNSW=8; rank_mean=4.857; match_rank=2 a 0 0 865 0 0 0 0 144 1714 98 0 0 823 0 0 c 0 0 915 347 2439 2439 766 1269 368 94 164 2299 181 0 0 g 0 0 171 2092 88 79 287 909 340 2439 2439 140 616 0 0 t 0 0 488 49 0 96 1387 117 17 0 0 0 820 0 0
6491_2pe5_C_3D-footprint_20130124__shift4 (6491_2pe5_C_3D-footprint_20130124_)	0.951	0.432	4.678	0.421	0.915	0.362	0.964	1	11	10	9	1	1	1	4.857	3	; positions_7nt_m3 versus 6491_2pe5_C_3D-footprint_20130124_; m=3/13; ncol2=5; w=5; offset=1; strand=D; shift=4; score= 4.8571; ----gcTCA------ ; cor=0.951; Ncor=0.432; logoDP=4.678; NIcor=0.421; NsEucl=0.915; SSD=0.362; NSW=0.964; rcor=1; rNcor=11; rlogoDP=10; rNIcor=9; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=4.857; match_rank=3 a 0 0 0 0 16 8 0 0 72 0 0 0 0 0 0 c 0 0 0 0 8 56 0 96 8 0 0 0 0 0 0 g 0 0 0 0 56 16 0 0 8 0 0 0 0 0 0 t 0 0 0 0 16 16 96 0 8 0 0 0 0 0 0
5872_TFAP2A_DBD_2_HumanTF_1.0__shift2 (5872_TFAP2A_DBD_2_HumanTF_1.0_)	0.783	0.652	6.662	0.600	0.895	2.201	0.890	8	3	5	3	4	7	7	5.286	4	; positions_7nt_m3 versus 5872_TFAP2A_DBD_2_HumanTF_1.0_; m=4/13; ncol2=11; w=10; offset=-1; strand=D; shift=2; score= 5.2857; --hGCCysAGGCw-- ; cor=0.783; Ncor=0.652; logoDP=6.662; NIcor=0.600; NsEucl=0.895; SSD=2.201; NSW=0.890; rcor=8; rNcor=3; rlogoDP=5; rNIcor=3; rNsEucl=4; rSSD=7; rNSW=7; rank_mean=5.286; match_rank=4 a 0 0 1706 137 0 0 33 575 3640 1012 0 31 1865 0 0 c 0 0 1939 968 5309 5309 1646 2682 995 224 31 4726 798 0 0 g 0 0 277 4340 139 11 658 1613 618 5309 5309 582 1295 0 0 t 0 0 1386 47 0 281 2972 438 56 0 0 21 1350 0 0
7566_PAX5_si_HOCOMOCO_v9__rc_shift4 (7566_PAX5_si_HOCOMOCO_v9__rc)	0.843	0.537	6.019	0.430	0.882	1.355	0.903	3	10	7	8	11	3	3	6.429	5	; positions_7nt_m3 versus 7566_PAX5_si_HOCOMOCO_v9__rc; m=5/13; ncol2=7; w=7; offset=1; strand=R; shift=4; score= 6.4286; ----cCTCAGc---- ; cor=0.843; Ncor=0.537; logoDP=6.019; NIcor=0.430; NsEucl=0.882; SSD=1.355; NSW=0.903; rcor=3; rNcor=10; rlogoDP=7; rNIcor=8; rNsEucl=11; rSSD=3; rNSW=3; rank_mean=6.429; match_rank=5 a 0 0 0 0 577 0 0 0 3025 155 0 0 0 0 0 c 0 0 0 0 1369 2524 0 3156 131 21 2012 0 0 0 0 g 0 0 0 0 783 35 13 0 0 2958 632 0 0 0 0 t 0 0 0 0 427 597 3143 0 0 22 512 0 0 0 0
3725_UP00028_UniPROBE_20120919__rc_shift0 (3725_UP00028_UniPROBE_20120919__rc)	0.765	0.561	6.752	0.492	0.900	2.415	0.890	10	8	3	7	2	11	5	6.571	6	; positions_7nt_m3 versus 3725_UP00028_UniPROBE_20120919__rc; m=6/13; ncol2=15; w=11; offset=-3; strand=R; shift=0; score= 6.5714; wthSCCysrGGSdww ; cor=0.765; Ncor=0.561; logoDP=6.752; NIcor=0.492; NsEucl=0.900; SSD=2.415; NSW=0.890; rcor=10; rNcor=8; rlogoDP=3; rNIcor=7; rNsEucl=2; rSSD=11; rNSW=5; rank_mean=6.571; match_rank=6 a 28 15 25 1 1 0 0 5 0.59 0.03 1 2 35 33 30 c 24 14 33 27 98 0.96 0.28 55 0.12 0.01 1 70 7 19 16 g 22 15 9 70 1 0.01 0.12 38 0.28 0.96 98 27 29 22 17 t 26 56 33 2 0 0.03 0.59 2 0 0 0 1 29 26 37
6022_1cjg_A_3D-footprint_20130124__shift4 (6022_1cjg_A_3D-footprint_20130124_)	0.900	0.409	3.648	0.375	0.889	0.612	0.939	2	13	11	11	9	2	2	7.143	7	; positions_7nt_m3 versus 6022_1cjg_A_3D-footprint_20130124_; m=7/13; ncol2=5; w=5; offset=1; strand=D; shift=4; score= 7.1429; ----GCTcA------ ; cor=0.900; Ncor=0.409; logoDP=3.648; NIcor=0.375; NsEucl=0.889; SSD=0.612; NSW=0.939; rcor=2; rNcor=13; rlogoDP=11; rNIcor=11; rNsEucl=9; rSSD=2; rNSW=2; rank_mean=7.143; match_rank=7 a 0 0 0 0 0 0 8 10 72 0 0 0 0 0 0 c 0 0 0 0 0 96 8 61 8 0 0 0 0 0 0 g 0 0 0 0 96 0 11 8 8 0 0 0 0 0 0 t 0 0 0 0 0 0 69 17 8 0 0 0 0 0 0
1944_PB0088.1_JASPAR_CORE_2009__rc_shift0 (1944_PB0088.1_JASPAR_CORE_2009__rc)	0.764	0.561	6.657	0.495	0.900	2.419	0.890	11	9	6	6	3	12	6	7.571	8	; positions_7nt_m3 versus 1944_PB0088.1_JASPAR_CORE_2009__rc; m=8/13; ncol2=15; w=11; offset=-3; strand=R; shift=0; score= 7.5714; wtySCCysrGGSdww ; cor=0.764; Ncor=0.561; logoDP=6.657; NIcor=0.495; NsEucl=0.900; SSD=2.419; NSW=0.890; rcor=11; rNcor=9; rlogoDP=6; rNIcor=6; rNsEucl=3; rSSD=12; rNSW=6; rank_mean=7.571; match_rank=8 a 27 15 24 1 1 0 0 5 59 3 1 2 35 33 29 c 24 14 33 27 98 96 28 54 12 1 1 70 7 19 16 g 22 15 9 70 1 1 12 38 28 96 98 27 28 21 17 t 26 56 33 2 1 3 59 2 0 0 1 1 29 26 37
7295_AP2A_f2_HOCOMOCO_v9__rc_shift3 (7295_AP2A_f2_HOCOMOCO_v9__rc)	0.802	0.584	2.399	-0.007	0.884	1.718	0.893	4	6	13	13	10	5	4	7.857	9	; positions_7nt_m3 versus 7295_AP2A_f2_HOCOMOCO_v9__rc; m=9/13; ncol2=8; w=8; offset=0; strand=R; shift=3; score= 7.8571; ---sCCyCaGG---- ; cor=0.802; Ncor=0.584; logoDP=2.399; NIcor=-0.007; NsEucl=0.884; SSD=1.718; NSW=0.893; rcor=4; rNcor=6; rlogoDP=13; rNIcor=13; rNsEucl=10; rSSD=5; rNSW=4; rank_mean=7.857; match_rank=9 a 0 0 0 70 4 9 70 187 1276 74 30 0 0 0 0 c 0 0 0 698 1859 1746 742 1742 169 81 97 0 0 0 0 g 0 0 0 1036 29 30 297 0 419 1749 1790 0 0 0 0 t 0 0 0 126 38 145 821 1 66 26 13 0 0 0 0
5878_TFAP2C_DBD_2_HumanTF_1.0__shift2 (5878_TFAP2C_DBD_2_HumanTF_1.0_)	0.762	0.635	6.738	0.583	0.890	2.421	0.879	12	4	4	4	8	13	12	8.143	10	; positions_7nt_m3 versus 5878_TFAP2C_DBD_2_HumanTF_1.0_; m=10/13; ncol2=11; w=10; offset=-1; strand=D; shift=2; score= 8.1429; --hGCCtsAGGCw-- ; cor=0.762; Ncor=0.635; logoDP=6.738; NIcor=0.583; NsEucl=0.890; SSD=2.421; NSW=0.879; rcor=12; rNcor=4; rlogoDP=4; rNIcor=4; rNsEucl=8; rSSD=13; rNSW=12; rank_mean=8.143; match_rank=10 a 0 0 2750 159 0 3 148 1124 5725 1038 0 127 3008 0 0 c 0 0 2292 836 7757 7757 1751 2896 837 85 108 7064 509 0 0 g 0 0 566 6921 148 33 1117 2871 1139 7757 7757 694 1870 0 0 t 0 0 2150 71 0 595 4740 867 56 17 0 97 2370 0 0
5882_TFAP2C_full_3_HumanTF_1.0__shift2 (5882_TFAP2C_full_3_HumanTF_1.0_)	0.757	0.631	5.039	0.573	0.890	2.405	0.880	13	5	9	5	7	10	11	8.571	11	; positions_7nt_m3 versus 5882_TFAP2C_full_3_HumanTF_1.0_; m=11/13; ncol2=11; w=10; offset=-1; strand=D; shift=2; score= 8.5714; --wGCCysAGGCw-- ; cor=0.757; Ncor=0.631; logoDP=5.039; NIcor=0.573; NsEucl=0.890; SSD=2.405; NSW=0.880; rcor=13; rNcor=5; rlogoDP=9; rNIcor=5; rNsEucl=7; rSSD=10; rNSW=11; rank_mean=8.571; match_rank=11 a 0 0 382 0 0 11 44 172 741 106 0 21 398 0 0 c 0 0 245 251 1026 1026 272 446 110 210 220 953 91 0 0 g 0 0 123 775 18 5 131 319 135 1026 1026 73 213 0 0 t 0 0 276 13 0 37 580 89 41 162 69 2 324 0 0
7297_AP2C_f1_HOCOMOCO_v9__rc_shift3 (7297_AP2C_f1_HOCOMOCO_v9__rc)	0.785	0.571	2.819	-0.001	0.879	1.877	0.883	5	7	12	12	12	6	10	9.143	12	; positions_7nt_m3 versus 7297_AP2C_f1_HOCOMOCO_v9__rc; m=12/13; ncol2=8; w=8; offset=0; strand=R; shift=3; score= 9.1429; ---sCCyCAGG---- ; cor=0.785; Ncor=0.571; logoDP=2.819; NIcor=-0.001; NsEucl=0.879; SSD=1.877; NSW=0.883; rcor=5; rNcor=7; rlogoDP=12; rNIcor=12; rNsEucl=12; rSSD=6; rNSW=10; rank_mean=9.143; match_rank=12 a 0 0 0 59 2 1 59 170 1166 6 25 0 0 0 0 c 0 0 0 571 1564 1282 629 1416 36 1 1 0 0 0 0 g 0 0 0 893 1 1 330 0 381 1567 1572 0 0 0 0 t 0 0 0 76 32 315 581 13 16 25 1 0 0 0 0
6517_2wbs_A_3D-footprint_20130124__shift8 (6517_2wbs_A_3D-footprint_20130124_)	0.766	0.418	5.958	0.398	0.853	1.560	0.870	9	12	8	10	13	4	13	9.857	13	; positions_7nt_m3 versus 6517_2wbs_A_3D-footprint_20130124_; m=13/13; ncol2=6; w=6; offset=5; strand=D; shift=8; score= 9.8571; --------aGGCGC- ; cor=0.766; Ncor=0.418; logoDP=5.958; NIcor=0.398; NsEucl=0.853; SSD=1.560; NSW=0.870; rcor=9; rNcor=12; rlogoDP=8; rNIcor=10; rNsEucl=13; rSSD=4; rNSW=13; rank_mean=9.857; match_rank=13 a 0 0 0 0 0 0 0 0 38 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 20 0 0 96 0 76 0 g 0 0 0 0 0 0 0 0 19 96 96 0 96 0 0 t 0 0 0 0 0 0 0 0 19 0 0 0 0 20 0