/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_8nt_m3/peak-motifs_positions_8nt_m3_vs_db_footprintDB.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_8nt_m3/peak-motifs_positions_8nt_m3.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_8nt_m3/peak-motifs_positions_8nt_m3_vs_db_footprintDB
 Program version       	1.118
 Input files
	file2 	$RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf
	file1 	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_8nt_m3/peak-motifs_positions_8nt_m3.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_8nt_m3/peak-motifs_positions_8nt_m3_vs_db_footprintDB_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_8nt_m3/peak-motifs_positions_8nt_m3_vs_db_footprintDB.tab
	html_index   	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_8nt_m3/peak-motifs_positions_8nt_m3_vs_db_footprintDB_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_8nt_m3/peak-motifs_positions_8nt_m3_vs_db_footprintDB_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_8nt_m3/peak-motifs_positions_8nt_m3_vs_db_footprintDB.html
	prefix       	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_8nt_m3/peak-motifs_positions_8nt_m3_vs_db_footprintDB
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_8nt_m3/peak-motifs_positions_8nt_m3.tf
		file1	1	12	34	dsTGGTAATTcw
	file2	4196 matrices	$RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf
		file2		1		17		100		yyaymCATCAAwmwwmm
		file2		2		10		7		ACCGGAAGws
		file2		3		16		100		wwtksgTAATTACsdy
		file2		4		17		100		twrttaATTAwtaawwr
		file2		5		18		100		TCCGynnnnnnnnnCGGA
		file2		6		20		100		gwrastTTCCGGAAyrywrr
		file2		7		20		100		yrawygGyGCCGyrysackh
		file2		8		21		100		wmrmraAtmGAAGaaawawww
		file2		9		20		100		rkmkkakCACGTGmyyrvwy
		file2		10		6		1		CTATCA
		file2		11		18		66		hTTwCCwWAwwdGGhAat
		...	4186 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	logoDP       	Dot product between the logo matrices.
	8	NIcor        	Normalized Pearson correlation between the information content matrices. NIcor = Icor * Wr
	9	NSW          	Normalized Sandelin-Wasserman similarity. NSW = SW/w
	10	SSD          	sum of squared distance.
	11	NsEucl       	relative Euclidian similarity. NsEucl = (max(dEucl) - dEucl)/max(dEucl)
	12	w1           	Width of the first matrix
	13	w2           	Width of the second matrix
	14	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	15	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	16	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	17	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	18	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	19	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	20	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
	21	consensus1   	IUPAC consensus of matrix 1 (dots represent non-aligned columns)
	22	consensus2   	IUPAC consensus of matrix 2 (dots represent non-aligned columns)
	23	rcor         	Matching rank for cor
	24	rNcor        	Matching rank for Ncor
	25	rlogoDP      	Matching rank for logoDP
	26	rNIcor       	Matching rank for NIcor
	27	rNsEucl      	Matching rank for NsEucl
	28	rSSD         	Matching rank for SSD
	29	rNSW         	Matching rank for NSW
	30	rank_mean    	Mean of the matching ranks on all selected metrics
	31	match_rank   	Rank of the match (sorting by rank_mean)
id1 id2 name1 name2 cor Ncor logoDP NIcor NSW SSD NsEucl w1 w2 w W Wr wr1 wr2 strand offset consensus1 consensus2 rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank
positions_8nt_m3 7458_HXD4_f1_HOCOMOCO_v9_ positions_8nt_m3 7458_HXD4_f1_HOCOMOCO_v9_ 0.931 0.543 3.927 0.539 0.968 0.4543 0.93192 12 7 7 12 0.5833 0.5833 1.0000 D 5 .....TAATTcw TAATTkw 3 2 23 4 2 3 2 5.5714 1
positions_8nt_m3 6107_1hdd_C_3D-footprint_20130124_ positions_8nt_m3 6107_1hdd_C_3D-footprint_20130124_ 0.895 0.522 5.452 0.517 0.952 0.6666 0.91753 12 7 7 12 0.5833 0.5833 1.0000 D 4 ....GTAATTc. GTAAtna 8 15 3 5 5 7 5 6.8571 2
positions_8nt_m3 7341_DLX2_f1_HOCOMOCO_v9_ positions_8nt_m3 7341_DLX2_f1_HOCOMOCO_v9_ 0.903 0.527 4.447 0.540 0.948 0.7236 0.91407 12 7 7 12 0.5833 0.5833 1.0000 D 5 .....TAATTcw TAATTrt 6 10 14 3 8 9 9 8.4286 3
positions_8nt_m3 1746_MA0187.1_JASPAR_CORE_2009_ positions_8nt_m3 1746_MA0187.1_JASPAR_CORE_2009_ 0.896 0.523 3.946 0.541 0.951 0.6796 0.91672 12 7 7 12 0.5833 0.5833 1.0000 D 5 .....TAATTcw TAATTry 7 13 22 2 6 8 6 9.1429 4
positions_8nt_m3 7597_PRRX2_f1_HOCOMOCO_v9_ positions_8nt_m3 7597_PRRX2_f1_HOCOMOCO_v9_ 0.935 0.467 4.476 0.477 0.956 0.5260 0.91453 12 6 6 12 0.5000 0.5000 1.0000 D 5 .....TAATTc. TAATTr 2 50 13 10 7 4 4 12.8571 5
positions_8nt_m3 7537_NOBOX_si_HOCOMOCO_v9_ positions_8nt_m3 7537_NOBOX_si_HOCOMOCO_v9_ 0.883 0.476 4.193 0.502 0.943 0.8023 0.90952 12 8 7 13 0.5385 0.5833 0.8750 D 5 .....TAATTcw TAATTrs. 10 47 16 7 10 12 12 16.2857 6
positions_8nt_m3 4964_en_DrosophilaTF_1.1_ positions_8nt_m3 4964_en_DrosophilaTF_1.1_ 0.921 0.460 4.019 0.464 0.951 0.5924 0.90929 12 6 6 12 0.5000 0.5000 1.0000 D 5 .....TAATTc. TAATTa 4 60 20 14 11 5 7 17.2857 7
positions_8nt_m3 2510_MA0125.1_JASPAR_CORE_2009_ positions_8nt_m3 2510_MA0125.1_JASPAR_CORE_2009_ 0.877 0.472 3.962 0.501 0.942 0.8072 0.90924 12 8 7 13 0.5385 0.5833 0.8750 D 5 .....TAATTcw TAATTrs. 12 48 21 8 12 13 13 18.1429 8
positions_8nt_m3 7502_MSX2_f1_HOCOMOCO_v9_ positions_8nt_m3 7502_MSX2_f1_HOCOMOCO_v9_ 0.920 0.460 2.111 0.469 0.967 0.4020 0.92528 12 6 6 12 0.5000 0.5000 1.0000 D 6 ......AATTcw AATTkk 5 61 45 12 3 2 3 18.7143 9
positions_8nt_m3 6108_1hdd_CD_3D-footprint_20130124_ positions_8nt_m3 6108_1hdd_CD_3D-footprint_20130124_ 0.882 0.441 5.752 0.441 0.947 0.8407 0.91896 12 12 8 16 0.5000 0.6667 0.6667 D 4 ....GTAATTcw GTAATnan.... 11 78 2 21 4 14 10 20.0000 10
positions_8nt_m3 4947_ap_DrosophilaTF_1.1_ positions_8nt_m3 4947_ap_DrosophilaTF_1.1_ 0.895 0.447 4.181 0.437 0.950 0.5986 0.90882 12 6 6 12 0.5000 0.5000 1.0000 D 5 .....TAATTc. TAATnn 9 71 17 22 13 6 8 20.8571 11
positions_8nt_m3 5218_Dlx1_DBD_HumanTF_1.0_ positions_8nt_m3 5218_Dlx1_DBD_HumanTF_1.0_ 0.813 0.542 2.111 0.383 0.927 1.1607 0.90477 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw KTAATTRS 29 3 44 36 17 25 19 24.7143 12
positions_8nt_m3 5210_DLX5_FL_HumanTF_1.0_ positions_8nt_m3 5210_DLX5_FL_HumanTF_1.0_ 0.808 0.539 1.911 0.403 0.928 1.1540 0.90505 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw DTAATTRB 31 5 58 27 15 21 17 24.8571 13
positions_8nt_m3 1790_MA0232.1_JASPAR_CORE_2009_ positions_8nt_m3 1790_MA0232.1_JASPAR_CORE_2009_ 0.875 0.437 4.038 0.445 0.938 0.7411 0.89854 12 6 6 12 0.5000 0.5000 1.0000 D 5 .....TAATTc. TAATkR 13 79 19 19 24 10 14 25.4286 14
positions_8nt_m3 5211_DLX6_DBD_HumanTF_1.0_ positions_8nt_m3 5211_DLX6_DBD_HumanTF_1.0_ 0.810 0.540 2.245 0.380 0.925 1.1999 0.90318 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw KTAATTRS 30 4 41 40 19 27 22 26.1429 15
positions_8nt_m3 5209_DLX4_DBD_HumanTF_1.0_ positions_8nt_m3 5209_DLX4_DBD_HumanTF_1.0_ 0.806 0.537 1.982 0.383 0.926 1.1790 0.90403 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw KTAATTRS 32 6 50 35 18 26 20 26.7143 16
positions_8nt_m3 6515_2vy1_A_3D-footprint_20130124_ positions_8nt_m3 6515_2vy1_A_3D-footprint_20130124_ 0.788 0.591 6.021 0.583 0.906 1.6951 0.89771 12 9 9 12 0.7500 0.7500 1.0000 D 2 ..TGGTAATTc. TGGTnnnTA 46 1 1 1 26 74 39 26.8571 17
positions_8nt_m3 1767_MA0208.1_JASPAR_CORE_2009_ positions_8nt_m3 1767_MA0208.1_JASPAR_CORE_2009_ 0.865 0.504 4.902 0.504 0.905 1.3321 0.88341 12 7 7 12 0.5833 0.5833 1.0000 D 5 .....TAATTcw TAATTAA 17 33 5 6 54 35 42 27.4286 18
positions_8nt_m3 5219_Dlx2_DBD_HumanTF_1.0_ positions_8nt_m3 5219_Dlx2_DBD_HumanTF_1.0_ 0.797 0.532 2.534 0.396 0.916 1.3406 0.89766 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw WTAATTRS 39 9 36 28 27 38 29 29.4286 19
positions_8nt_m3 5504_LMX1B_full_HumanTF_1.0_ positions_8nt_m3 5504_LMX1B_full_HumanTF_1.0_ 0.788 0.525 2.120 0.395 0.920 1.2823 0.89991 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw KTAATTRR 45 12 43 29 22 31 25 29.5714 20
positions_8nt_m3 5208_DLX3_DBD_HumanTF_1.0_ positions_8nt_m3 5208_DLX3_DBD_HumanTF_1.0_ 0.805 0.537 1.780 0.378 0.928 1.1564 0.90495 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw KTAATTRS 33 7 69 43 16 22 18 29.7143 21
positions_8nt_m3 1782_MA0223.1_JASPAR_CORE_2009__MA0224.1_JASPAR_CORE_2009_ positions_8nt_m3 1782_MA0223.1_JASPAR_CORE_2009__MA0224.1_JASPAR_CORE_2009_ 0.828 0.483 4.811 0.459 0.905 1.3241 0.88376 12 7 7 12 0.5833 0.5833 1.0000 D 4 ....GTAATTc. bTAATTA 25 44 8 15 53 34 41 31.4286 22
positions_8nt_m3 5207_DLX2_DBD_HumanTF_1.0_ positions_8nt_m3 5207_DLX2_DBD_HumanTF_1.0_ 0.800 0.533 1.349 0.355 0.929 1.1347 0.90585 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw KTAATTRS 36 8 81 50 14 20 16 32.1429 23
positions_8nt_m3 5922_Vsx1_DBD_HumanTF_1.0_ positions_8nt_m3 5922_Vsx1_DBD_HumanTF_1.0_ 0.789 0.526 1.800 0.369 0.921 1.2595 0.90081 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATTRR 44 11 67 44 21 29 24 34.2857 24
positions_8nt_m3 2465_MA0075.1_JASPAR_CORE_2009_ positions_8nt_m3 2465_MA0075.1_JASPAR_CORE_2009_ 0.983 0.410 1.577 0.069 0.979 0.2107 0.93509 12 5 5 12 0.4167 0.4167 1.0000 R 5 .....TAATT.. TAATT 1 85 77 81 1 1 1 35.2857 25
positions_8nt_m3 1731_MA0172.1_JASPAR_CORE_2009_ positions_8nt_m3 1731_MA0172.1_JASPAR_CORE_2009_ 0.866 0.505 2.681 0.219 0.909 1.2807 0.88568 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TAATTAA 16 31 31 59 47 30 35 35.5714 26
positions_8nt_m3 5909_UNCX_DBD_2_HumanTF_1.0_ positions_8nt_m3 5909_UNCX_DBD_2_HumanTF_1.0_ 0.775 0.517 1.855 0.387 0.916 1.3365 0.89782 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATTRR 54 17 63 32 25 36 28 36.4286 27
positions_8nt_m3 5683_PRRX2_full_HumanTF_1.0_ positions_8nt_m3 5683_PRRX2_full_HumanTF_1.0_ 0.779 0.519 1.708 0.366 0.919 1.2937 0.89947 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATTRR 52 16 71 46 23 32 27 38.1429 28
positions_8nt_m3 5680_PRRX1_DBD_HumanTF_1.0_ positions_8nt_m3 5680_PRRX1_DBD_HumanTF_1.0_ 0.773 0.515 2.229 0.382 0.910 1.4375 0.89402 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATTRR 55 18 42 37 33 48 34 38.1429 29
positions_8nt_m3 6061_1fjl_B_3D-footprint_20130124_ positions_8nt_m3 6061_1fjl_B_3D-footprint_20130124_ 0.850 0.496 1.285 0.076 0.933 0.9331 0.90242 12 7 7 12 0.5833 0.5833 1.0000 R 4 ....GTAATTc. GTAATNA 19 39 82 79 20 15 15 38.4286 30
positions_8nt_m3 2645_MA0426.1_JASPAR_CORE_2009_ positions_8nt_m3 2645_MA0426.1_JASPAR_CORE_2009_ 0.875 0.437 4.855 0.428 0.904 1.1574 0.87321 12 6 6 12 0.5000 0.5000 1.0000 D 5 .....TAATTc. TAATTG 14 80 6 24 75 23 47 38.4286 31
positions_8nt_m3 2710_PF0023.1_JASPAR_CORE_2009_ positions_8nt_m3 2710_PF0023.1_JASPAR_CORE_2009_ 0.875 0.437 4.855 0.428 0.904 1.1574 0.87321 12 6 6 12 0.5000 0.5000 1.0000 D 5 .....TAATTc. TAATTA 14 80 6 24 75 23 47 38.4286 32
positions_8nt_m3 1742_MA0183.1_JASPAR_CORE_2009_ positions_8nt_m3 1742_MA0183.1_JASPAR_CORE_2009_ 0.859 0.463 0.422 -0.064 0.946 0.7494 0.91255 12 8 7 13 0.5385 0.5833 0.8750 R 5 .....TAATTcw TWATTMR. 18 58 85 83 9 11 11 39.2857 33
positions_8nt_m3 5681_PRRX1_full_1_HumanTF_1.0_ positions_8nt_m3 5681_PRRX1_full_1_HumanTF_1.0_ 0.767 0.511 2.072 0.383 0.911 1.4205 0.89466 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATTRG 64 23 46 34 32 46 33 39.7143 34
positions_8nt_m3 6262_1puf_A_3D-footprint_20130124_ positions_8nt_m3 6262_1puf_A_3D-footprint_20130124_ 0.847 0.494 1.663 0.070 0.923 1.0826 0.89490 12 7 7 12 0.5833 0.5833 1.0000 R 1 .sTGGTAA.... GTNGTAA 20 40 73 80 30 19 23 40.7143 35
positions_8nt_m3 5258_EN1_full_1_HumanTF_1.0_ positions_8nt_m3 5258_EN1_full_1_HumanTF_1.0_ 0.769 0.512 2.738 0.394 0.904 1.5389 0.89035 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw CTAATTRS 63 22 29 31 37 59 45 40.8571 36
positions_8nt_m3 5561_Meox2_DBD_HumanTF_1.0_ positions_8nt_m3 5561_Meox2_DBD_HumanTF_1.0_ 0.753 0.502 2.668 0.474 0.906 1.5010 0.89171 12 8 8 12 0.6667 0.6667 1.0000 D 4 ....GTAATTcw kTAATkAc 83 35 32 11 35 52 38 40.8571 37
positions_8nt_m3 5751_SHOX_DBD_HumanTF_1.0_ positions_8nt_m3 5751_SHOX_DBD_HumanTF_1.0_ 0.772 0.514 2.505 0.380 0.906 1.5099 0.89139 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATTRR 59 19 37 41 36 55 40 41.0000 38
positions_8nt_m3 1737_MA0178.1_JASPAR_CORE_2009_ positions_8nt_m3 1737_MA0178.1_JASPAR_CORE_2009_ 0.830 0.484 1.880 0.183 0.914 1.2059 0.88907 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TAATTAA 24 43 61 64 39 28 30 41.2857 39
positions_8nt_m3 5541_MSX1_full_HumanTF_1.0_ positions_8nt_m3 5541_MSX1_full_HumanTF_1.0_ 0.772 0.514 2.343 0.346 0.908 1.4751 0.89265 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw BTAATTRS 60 20 39 51 34 50 36 41.4286 40
positions_8nt_m3 1754_MA0195.1_JASPAR_CORE_2009_ positions_8nt_m3 1754_MA0195.1_JASPAR_CORE_2009_ 0.819 0.478 1.390 0.147 0.925 1.0442 0.89678 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TAATTAR 27 46 80 72 29 17 21 41.7143 41
positions_8nt_m3 5701_RAXL1_DBD_HumanTF_1.0_ positions_8nt_m3 5701_RAXL1_DBD_HumanTF_1.0_ 0.762 0.508 1.863 0.381 0.911 1.4182 0.89474 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATTRR 70 26 62 38 31 45 32 43.4286 42
positions_8nt_m3 5687_Prrx2_DBD_HumanTF_1.0_ positions_8nt_m3 5687_Prrx2_DBD_HumanTF_1.0_ 0.758 0.505 2.634 0.408 0.900 1.5936 0.88842 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATTRR 77 30 34 26 40 64 52 46.1429 43
positions_8nt_m3 1747_MA0188.1_JASPAR_CORE_2009_ positions_8nt_m3 1747_MA0188.1_JASPAR_CORE_2009_ 0.843 0.492 1.736 0.104 0.907 1.2992 0.88486 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TAATTGS 22 41 70 78 49 33 37 47.1429 44
positions_8nt_m3 5564_Msx3_DBD_2_HumanTF_1.0_ positions_8nt_m3 5564_Msx3_DBD_2_HumanTF_1.0_ 0.769 0.513 2.776 0.356 0.899 1.6173 0.88759 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATTRS 62 21 28 49 44 69 58 47.2857 45
positions_8nt_m3 5817_Shox2_DBD_HumanTF_1.0_ positions_8nt_m3 5817_Shox2_DBD_HumanTF_1.0_ 0.761 0.507 2.625 0.380 0.900 1.6026 0.88810 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATTRR 71 27 35 39 41 66 53 47.4286 46
positions_8nt_m3 1798_MA0240.1_JASPAR_CORE_2009_ positions_8nt_m3 1798_MA0240.1_JASPAR_CORE_2009_ 0.824 0.480 1.994 0.185 0.901 1.3834 0.88119 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw YAATTAA 26 45 49 63 59 41 51 47.7143 47
positions_8nt_m3 1759_MA0200.1_JASPAR_CORE_2009_ positions_8nt_m3 1759_MA0200.1_JASPAR_CORE_2009_ 0.787 0.459 4.735 0.449 0.891 1.5272 0.87517 12 7 7 12 0.5833 0.5833 1.0000 D 4 ....GTAATTc. mTAATTr 48 63 10 17 71 57 71 48.1429 48
positions_8nt_m3 1794_MA0236.1_JASPAR_CORE_2009_ positions_8nt_m3 1794_MA0236.1_JASPAR_CORE_2009_ 0.802 0.468 1.889 0.193 0.904 1.3389 0.88311 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TAATTAR 34 49 60 61 55 37 43 48.4286 49
positions_8nt_m3 5540_MSX1_DBD_2_HumanTF_1.0_ positions_8nt_m3 5540_MSX1_DBD_2_HumanTF_1.0_ 0.764 0.509 2.789 0.362 0.897 1.6417 0.88675 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATTRS 68 25 26 47 46 71 61 49.1429 50
positions_8nt_m3 5479_ISX_DBD_2_HumanTF_1.0_ positions_8nt_m3 5479_ISX_DBD_2_HumanTF_1.0_ 0.764 0.509 2.724 0.360 0.898 1.6297 0.88716 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATTRG 67 24 30 48 45 70 60 49.1429 51
positions_8nt_m3 6487_2p5l_D_3D-footprint_20130124_ positions_8nt_m3 6487_2p5l_D_3D-footprint_20130124_ 0.814 0.407 1.458 0.368 0.912 1.0555 0.87892 12 6 6 12 0.5000 0.5000 1.0000 D 6 ......AATTcw AATTCA 28 86 79 45 63 18 31 50.0000 52
positions_8nt_m3 1757_MA0198.1_JASPAR_CORE_2009__MA0455.1_JASPAR_CORE_2009_ positions_8nt_m3 1757_MA0198.1_JASPAR_CORE_2009__MA0455.1_JASPAR_CORE_2009_ 0.785 0.458 4.925 0.450 0.886 1.6018 0.87215 12 7 7 12 0.5833 0.5833 1.0000 D 4 ....GTAATTc. yTAATTr 49 64 4 16 78 65 77 50.4286 53
positions_8nt_m3 5419_HOXA2_DBD_HumanTF_1.0_ positions_8nt_m3 5419_HOXA2_DBD_HumanTF_1.0_ 0.755 0.522 1.955 0.344 0.904 1.7250 0.89681 12 10 9 13 0.6923 0.7500 0.9000 R 3 ...GGTAATTcw GSTAATKRS. 82 14 53 52 28 80 44 50.4286 54
positions_8nt_m3 5750_SHOX2_DBD_HumanTF_1.0_ positions_8nt_m3 5750_SHOX2_DBD_HumanTF_1.0_ 0.756 0.504 2.496 0.380 0.900 1.6068 0.88796 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATTRR 81 34 38 42 42 67 54 51.1429 55
positions_8nt_m3 5480_ISX_full_HumanTF_1.0_ positions_8nt_m3 5480_ISX_full_HumanTF_1.0_ 0.760 0.507 3.179 0.385 0.892 1.7249 0.88392 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATTRR 73 28 24 33 52 79 69 51.1429 56
positions_8nt_m3 5640_PDX1_DBD_2_HumanTF_1.0_ positions_8nt_m3 5640_PDX1_DBD_2_HumanTF_1.0_ 0.751 0.501 2.778 0.394 0.895 1.6816 0.88538 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATKRS 84 36 27 30 48 72 64 51.5714 57
positions_8nt_m3 1753_MA0194.1_JASPAR_CORE_2009_ positions_8nt_m3 1753_MA0194.1_JASPAR_CORE_2009_ 0.836 0.488 2.968 0.227 0.887 1.5830 0.87291 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TAATTAA 23 42 25 56 77 63 76 51.7143 58
positions_8nt_m3 6133_1io4_C_3D-footprint_20130124_ positions_8nt_m3 6133_1io4_C_3D-footprint_20130124_ 0.845 0.422 0.126 -0.094 0.919 0.9673 0.88409 12 6 6 12 0.5000 0.5000 1.0000 R 0 dsTGGT...... TGTGGT 21 82 86 85 51 16 26 52.4286 59
positions_8nt_m3 7572_PDX1_do_HOCOMOCO_v9_ positions_8nt_m3 7572_PDX1_do_HOCOMOCO_v9_ 0.757 0.504 4.070 0.483 0.880 1.9197 0.87753 12 8 8 12 0.6667 0.6667 1.0000 D 4 ....GTAATTcw STmATTAG 80 32 18 9 66 86 78 52.7143 60
positions_8nt_m3 7342_DLX3_do_HOCOMOCO_v9_ positions_8nt_m3 7342_DLX3_do_HOCOMOCO_v9_ 0.757 0.466 4.436 0.469 0.891 1.7491 0.88310 12 9 8 13 0.6154 0.6667 0.8889 D 4 ....GTAATTcw mTAATTrs. 79 52 15 13 56 83 72 52.8571 61
positions_8nt_m3 5171_BSX_DBD_HumanTF_1.0_ positions_8nt_m3 5171_BSX_DBD_HumanTF_1.0_ 0.751 0.501 1.938 0.282 0.903 1.5520 0.88989 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw BTAATKRS 85 37 55 54 38 60 50 54.1429 62
positions_8nt_m3 5543_MSX2_DBD_2_HumanTF_1.0_ positions_8nt_m3 5543_MSX2_DBD_2_HumanTF_1.0_ 0.758 0.505 2.642 0.326 0.893 1.7068 0.88452 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATTGG 75 29 33 53 50 75 65 54.2857 63
positions_8nt_m3 1815_MA0257.1_JASPAR_CORE_2009_ positions_8nt_m3 1815_MA0257.1_JASPAR_CORE_2009_ 0.795 0.464 1.657 0.160 0.904 1.3488 0.88268 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TMATTAR 42 57 74 68 57 39 46 54.7143 64
positions_8nt_m3 1750_MA0191.1_JASPAR_CORE_2009_ positions_8nt_m3 1750_MA0191.1_JASPAR_CORE_2009_ 0.791 0.462 1.822 0.194 0.899 1.4086 0.88011 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw YMATTAA 43 59 65 60 60 42 56 55.0000 65
positions_8nt_m3 1809_MA0251.1_JASPAR_CORE_2009_ positions_8nt_m3 1809_MA0251.1_JASPAR_CORE_2009_ 0.798 0.466 1.828 0.156 0.899 1.4119 0.87997 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw YAATTAR 38 54 64 69 61 43 57 55.1429 66
positions_8nt_m3 1788_MA0230.1_JASPAR_CORE_2009_ positions_8nt_m3 1788_MA0230.1_JASPAR_CORE_2009_ 0.801 0.467 2.268 0.219 0.890 1.5379 0.87473 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TMATTAA 35 51 40 58 72 58 73 55.2857 67
positions_8nt_m3 1726_MA0167.1_JASPAR_CORE_2009_ positions_8nt_m3 1726_MA0167.1_JASPAR_CORE_2009_ 0.797 0.465 1.604 0.145 0.903 1.3562 0.88236 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TAATTAR 40 55 76 73 58 40 49 55.8571 68
positions_8nt_m3 5162_BARX1_DBD_2_HumanTF_1.0_ positions_8nt_m3 5162_BARX1_DBD_2_HumanTF_1.0_ 0.750 0.500 2.060 0.282 0.900 1.6070 0.88795 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....GTAATTcw YTAATKGB 86 38 47 55 43 68 55 56.0000 69
positions_8nt_m3 1736_MA0177.1_JASPAR_CORE_2009_ positions_8nt_m3 1736_MA0177.1_JASPAR_CORE_2009_ 0.799 0.466 1.804 0.155 0.897 1.4372 0.87890 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TMATTAR 37 53 66 70 64 47 62 57.0000 70
positions_8nt_m3 1738_MA0179.1_JASPAR_CORE_2009_ positions_8nt_m3 1738_MA0179.1_JASPAR_CORE_2009_ 0.761 0.444 4.700 0.444 0.877 1.7229 0.86741 12 7 7 12 0.5833 0.5833 1.0000 D 4 ....GTAATTc. yTAATTr 72 74 11 20 82 78 82 59.8571 71
positions_8nt_m3 1765_MA0206.1_JASPAR_CORE_2009_ positions_8nt_m3 1765_MA0206.1_JASPAR_CORE_2009_ 0.779 0.454 2.050 0.224 0.892 1.5136 0.87572 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TMATTAA 53 67 48 57 70 56 70 60.1429 72
positions_8nt_m3 1779_MA0220.1_JASPAR_CORE_2009_ positions_8nt_m3 1779_MA0220.1_JASPAR_CORE_2009_ 0.760 0.443 4.696 0.445 0.876 1.7305 0.86712 12 7 7 12 0.5833 0.5833 1.0000 D 4 ....GTAATTc. yTAATTr 74 75 12 18 84 82 84 61.2857 73
positions_8nt_m3 1799_MA0241.1_JASPAR_CORE_2009_ positions_8nt_m3 1799_MA0241.1_JASPAR_CORE_2009_ 0.797 0.465 1.786 0.127 0.892 1.5080 0.87595 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TAATTAR 41 56 68 76 69 54 68 61.7143 74
positions_8nt_m3 1768_MA0209.1_JASPAR_CORE_2009_ positions_8nt_m3 1768_MA0209.1_JASPAR_CORE_2009_ 0.782 0.456 1.929 0.145 0.893 1.5049 0.87608 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TMATTAR 51 66 56 74 68 53 67 62.1429 75
positions_8nt_m3 1808_MA0250.1_JASPAR_CORE_2009_ positions_8nt_m3 1808_MA0250.1_JASPAR_CORE_2009_ 0.757 0.442 4.781 0.432 0.871 1.8100 0.86410 12 7 7 12 0.5833 0.5833 1.0000 D 4 ....GTAATTc. tTAATTr 78 77 9 23 85 84 85 63.0000 76
positions_8nt_m3 1796_MA0238.1_JASPAR_CORE_2009_ positions_8nt_m3 1796_MA0238.1_JASPAR_CORE_2009_ 0.787 0.459 1.927 0.164 0.888 1.5746 0.87324 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TMATTAR 47 62 57 66 74 62 75 63.2857 77
positions_8nt_m3 1748_MA0189.1_JASPAR_CORE_2009_ positions_8nt_m3 1748_MA0189.1_JASPAR_CORE_2009_ 0.766 0.447 1.647 0.163 0.899 1.4180 0.87971 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TMATTAR 66 73 75 67 62 44 59 63.7143 78
positions_8nt_m3 1740_MA0181.1_JASPAR_CORE_2009_ positions_8nt_m3 1740_MA0181.1_JASPAR_CORE_2009_ 0.772 0.450 1.953 0.185 0.889 1.5583 0.87390 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw YAATTAR 58 69 54 62 73 61 74 64.4286 79
positions_8nt_m3 1743_MA0184.1_JASPAR_CORE_2009_ positions_8nt_m3 1743_MA0184.1_JASPAR_CORE_2009_ 0.784 0.457 1.466 0.108 0.893 1.4942 0.87652 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw YAATTAR 50 65 78 77 67 51 66 64.8571 80
positions_8nt_m3 1784_MA0226.1_JASPAR_CORE_2009_ positions_8nt_m3 1784_MA0226.1_JASPAR_CORE_2009_ 0.772 0.450 1.959 0.183 0.880 1.6817 0.86900 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw YAATTAA 57 68 52 65 79 73 79 67.5714 81
positions_8nt_m3 1756_MA0197.1_JASPAR_CORE_2009_ positions_8nt_m3 1756_MA0197.1_JASPAR_CORE_2009_ 0.762 0.410 0.461 -0.100 0.896 1.4606 0.87792 12 8 7 13 0.5385 0.5833 0.8750 R 5 .....TAATTcw TMATTAW. 69 84 84 86 65 49 63 71.4286 82
positions_8nt_m3 1761_MA0202.1_JASPAR_CORE_2009_ positions_8nt_m3 1761_MA0202.1_JASPAR_CORE_2009_ 0.769 0.449 1.895 0.131 0.878 1.7115 0.86785 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw YAATTAR 61 70 59 75 80 76 80 71.5714 83
positions_8nt_m3 1786_MA0228.1_JASPAR_CORE_2009_ positions_8nt_m3 1786_MA0228.1_JASPAR_CORE_2009_ 0.758 0.442 1.980 0.153 0.877 1.7160 0.86767 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....TAATTcw TMATTAR 76 76 51 71 81 77 81 73.2857 84
positions_8nt_m3 6026_1co0_A_3D-footprint_20130124_ positions_8nt_m3 6026_1co0_A_3D-footprint_20130124_ 0.767 0.447 1.667 0.040 0.869 1.8347 0.86318 12 7 7 12 0.5833 0.5833 1.0000 R 1 .sTGGTAA.... CTGGTAC 65 72 72 82 86 85 86 78.2857 85
positions_8nt_m3 1787_MA0229.1_JASPAR_CORE_2009_ positions_8nt_m3 1787_MA0229.1_JASPAR_CORE_2009_ 0.772 0.416 0.671 -0.092 0.876 1.7300 0.86714 12 8 7 13 0.5385 0.5833 0.8750 R 5 .....TAATTcw YAATTAR. 56 83 83 84 83 81 83 79.0000 86 
 Host name	biow
 Job started	2014-09-05.203631
 Job done	2014-09-05.203739
 Seconds	35.04
	user	35.04
	system	2.03
	cuser	27.93
;	csystem	3.58