One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_8nt_m3/peak-motifs_positions_8nt_m3.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.202657_2014-09-05.202657_8OTbPR/results/discovered_motifs/positions_8nt_m3/peak-motifs_positions_8nt_m3_vs_db_footprintDB

One-to-n matrix alignment; reference matrix: positions_8nt_m3_shift0 ; 87 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
positions_8nt_m3_shift0 (positions_8nt_m3)
; positions_8nt_m3; m=0 (reference); ncol1=12; shift=0; ncol=16; dsTGGTAATTcw---- ; Alignment reference a 10 6 1 0 0 0 29 28 5 3 7 13 0 0 0 0 c 3 13 0 0 0 0 2 2 2 1 15 8 0 0 0 0 g 10 12 1 34 33 0 2 2 3 4 7 2 0 0 0 0 t 11 3 32 0 1 34 1 2 24 26 5 11 0 0 0 0

7458_HXD4_f1_HOCOMOCO_v9__shift5 (7458_HXD4_f1_HOCOMOCO_v9_) 0.931 0.543 3.927 0.539 0.932 0.454 0.968 3 2 23 4 2 3 2 5.571 1
; positions_8nt_m3 versus 7458_HXD4_f1_HOCOMOCO_v9_; m=1/86; ncol2=7; w=7; offset=5; strand=D; shift=5; score= 5.5714; -----TAATTkw---- ; cor=0.931; Ncor=0.543; logoDP=3.927; NIcor=0.539; NsEucl=0.932; SSD=0.454; NSW=0.968; rcor=3; rNcor=2; rlogoDP=23; rNIcor=4; rNsEucl=2; rSSD=3; rNSW=2; rank_mean=5.571; match_rank=1 a 0 0 0 0 0 0 6 7 0 0 1 3 0 0 0 0 c 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 g 0 0 0 0 0 0 1 1 0 0 4 1 0 0 0 0 t 0 0 0 0 0 8 0 0 8 8 2 3 0 0 0 0

6107_1hdd_C_3D-footprint_20130124__shift4 (6107_1hdd_C_3D-footprint_20130124_) 0.895 0.522 5.452 0.517 0.918 0.667 0.952 8 15 3 5 5 7 5 6.857 2
; positions_8nt_m3 versus 6107_1hdd_C_3D-footprint_20130124_; m=2/86; ncol2=7; w=7; offset=4; strand=D; shift=4; score= 6.8571; ----GTAAtna----- ; cor=0.895; Ncor=0.522; logoDP=5.452; NIcor=0.517; NsEucl=0.918; SSD=0.667; NSW=0.952; rcor=8; rNcor=15; rlogoDP=3; rNIcor=5; rNsEucl=5; rSSD=7; rNSW=5; rank_mean=6.857; match_rank=2 a 0 0 0 0 0 0 96 96 16 24 54 0 0 0 0 0 c 0 0 0 0 0 0 0 0 13 24 16 0 0 0 0 0 g 0 0 0 0 96 0 0 0 13 24 13 0 0 0 0 0 t 0 0 0 0 0 96 0 0 54 24 13 0 0 0 0 0

7341_DLX2_f1_HOCOMOCO_v9__shift5 (7341_DLX2_f1_HOCOMOCO_v9_) 0.903 0.527 4.447 0.540 0.914 0.724 0.948 6 10 14 3 8 9 9 8.429 3
; positions_8nt_m3 versus 7341_DLX2_f1_HOCOMOCO_v9_; m=3/86; ncol2=7; w=7; offset=5; strand=D; shift=5; score= 8.4286; -----TAATTrt---- ; cor=0.903; Ncor=0.527; logoDP=4.447; NIcor=0.540; NsEucl=0.914; SSD=0.724; NSW=0.948; rcor=6; rNcor=10; rlogoDP=14; rNIcor=3; rNsEucl=8; rSSD=9; rNSW=9; rank_mean=8.429; match_rank=3 a 0 0 0 0 0 0 5 4 0 0 3 1 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 g 0 0 0 0 0 0 0 1 0 0 2 1 0 0 0 0 t 0 0 0 0 0 5 0 0 5 5 0 2 0 0 0 0

1746_MA0187.1_JASPAR_CORE_2009__shift5 (1746_MA0187.1_JASPAR_CORE_2009_) 0.896 0.523 3.946 0.541 0.917 0.680 0.951 7 13 22 2 6 8 6 9.143 4
; positions_8nt_m3 versus 1746_MA0187.1_JASPAR_CORE_2009_; m=4/86; ncol2=7; w=7; offset=5; strand=D; shift=5; score= 9.1429; -----TAATTry---- ; cor=0.896; Ncor=0.523; logoDP=3.946; NIcor=0.541; NsEucl=0.917; SSD=0.680; NSW=0.951; rcor=7; rNcor=13; rlogoDP=22; rNIcor=2; rNsEucl=6; rSSD=8; rNSW=6; rank_mean=9.143; match_rank=4 a 0 0 0 0 0 1 22 23 0 3 10 1 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 12 0 0 0 0 g 0 0 0 0 0 0 1 0 0 3 9 4 0 0 0 0 t 0 0 0 0 0 22 0 0 23 17 4 6 0 0 0 0

7597_PRRX2_f1_HOCOMOCO_v9__shift5 (7597_PRRX2_f1_HOCOMOCO_v9_) 0.935 0.467 4.476 0.477 0.915 0.526 0.956 2 50 13 10 7 4 4 12.857 5
; positions_8nt_m3 versus 7597_PRRX2_f1_HOCOMOCO_v9_; m=5/86; ncol2=6; w=6; offset=5; strand=D; shift=5; score=12.8571; -----TAATTr----- ; cor=0.935; Ncor=0.467; logoDP=4.476; NIcor=0.477; NsEucl=0.915; SSD=0.526; NSW=0.956; rcor=2; rNcor=50; rlogoDP=13; rNIcor=10; rNsEucl=7; rSSD=4; rNSW=4; rank_mean=12.857; match_rank=5 a 0 0 0 0 0 0 59 58 1 0 27 0 0 0 0 0 c 0 0 0 0 0 0 0 0 1 3 1 0 0 0 0 0 g 0 0 0 0 0 0 0 1 0 3 29 0 0 0 0 0 t 0 0 0 0 0 59 0 0 57 53 2 0 0 0 0 0

7537_NOBOX_si_HOCOMOCO_v9__shift5 (7537_NOBOX_si_HOCOMOCO_v9_) 0.883 0.476 4.193 0.502 0.910 0.802 0.943 10 47 16 7 10 12 12 16.286 6
; positions_8nt_m3 versus 7537_NOBOX_si_HOCOMOCO_v9_; m=6/86; ncol2=8; w=7; offset=5; strand=D; shift=5; score=16.2857; -----TAATTrsy--- ; cor=0.883; Ncor=0.476; logoDP=4.193; NIcor=0.502; NsEucl=0.910; SSD=0.802; NSW=0.943; rcor=10; rNcor=47; rlogoDP=16; rNIcor=7; rNsEucl=10; rSSD=12; rNSW=12; rank_mean=16.286; match_rank=6 a 0 0 0 0 0 0 64 64 2 2 24 13 5 0 0 0 c 0 0 0 0 0 0 0 2 2 0 0 20 18 0 0 0 g 0 0 0 0 0 0 0 0 2 7 42 29 11 0 0 0 t 0 0 0 0 0 66 2 0 60 57 0 4 32 0 0 0

4964_en_DrosophilaTF_1.1__shift5 (4964_en_DrosophilaTF_1.1_) 0.921 0.460 4.019 0.464 0.909 0.592 0.951 4 60 20 14 11 5 7 17.286 7
; positions_8nt_m3 versus 4964_en_DrosophilaTF_1.1_; m=7/86; ncol2=6; w=6; offset=5; strand=D; shift=5; score=17.2857; -----TAATTa----- ; cor=0.921; Ncor=0.460; logoDP=4.019; NIcor=0.464; NsEucl=0.909; SSD=0.592; NSW=0.951; rcor=4; rNcor=60; rlogoDP=20; rNIcor=14; rNsEucl=11; rSSD=5; rNSW=7; rank_mean=17.286; match_rank=7 a 0 0 0 0 0 0.0388 1 1 0.0189 3 0.6477 0 0 0 0 0 c 0 0 0 0 0 0.0291 0 0 0 2 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 7 0.2386 0 0 0 0 0 t 0 0 0 0 0 0.932 0 0 0.9811 88 0.1136 0 0 0 0 0

2510_MA0125.1_JASPAR_CORE_2009__shift5 (2510_MA0125.1_JASPAR_CORE_2009_) 0.877 0.472 3.962 0.501 0.909 0.807 0.942 12 48 21 8 12 13 13 18.143 8
; positions_8nt_m3 versus 2510_MA0125.1_JASPAR_CORE_2009_; m=8/86; ncol2=8; w=7; offset=5; strand=D; shift=5; score=18.1429; -----TAATTrsy--- ; cor=0.877; Ncor=0.472; logoDP=3.962; NIcor=0.501; NsEucl=0.909; SSD=0.807; NSW=0.942; rcor=12; rNcor=48; rlogoDP=21; rNIcor=8; rNsEucl=12; rSSD=13; rNSW=13; rank_mean=18.143; match_rank=8 a 0 0 0 0 0 0 36 38 1 2 15 4 2 0 0 0 c 0 0 0 0 0 1 0 0 1 0 0 12 13 0 0 0 g 0 0 0 0 0 0 0 0 2 4 22 18 6 0 0 0 t 0 0 0 0 0 37 2 0 34 32 1 4 17 0 0 0

7502_MSX2_f1_HOCOMOCO_v9__shift6 (7502_MSX2_f1_HOCOMOCO_v9_) 0.920 0.460 2.111 0.469 0.925 0.402 0.967 5 61 45 12 3 2 3 18.714 9
; positions_8nt_m3 versus 7502_MSX2_f1_HOCOMOCO_v9_; m=9/86; ncol2=6; w=6; offset=6; strand=D; shift=6; score=18.7143; ------AATTkk---- ; cor=0.920; Ncor=0.460; logoDP=2.111; NIcor=0.469; NsEucl=0.925; SSD=0.402; NSW=0.967; rcor=5; rNcor=61; rlogoDP=45; rNIcor=12; rNsEucl=3; rSSD=2; rNSW=3; rank_mean=18.714; match_rank=9 a 0 0 0 0 0 0 10 10 0 2 2 2 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 g 0 0 0 0 0 0 1 1 0 0 4 3 0 0 0 0 t 0 0 0 0 0 0 0 0 11 9 3 5 0 0 0 0

6108_1hdd_CD_3D-footprint_20130124__shift4 (6108_1hdd_CD_3D-footprint_20130124_) 0.882 0.441 5.752 0.441 0.919 0.841 0.947 11 78 2 21 4 14 10 20.000 10
; positions_8nt_m3 versus 6108_1hdd_CD_3D-footprint_20130124_; m=10/86; ncol2=12; w=8; offset=4; strand=D; shift=4; score= 20; ----GTAATnannTna ; cor=0.882; Ncor=0.441; logoDP=5.752; NIcor=0.441; NsEucl=0.919; SSD=0.841; NSW=0.947; rcor=11; rNcor=78; rlogoDP=2; rNIcor=21; rNsEucl=4; rSSD=14; rNSW=10; rank_mean=20.000; match_rank=10 a 0 0 0 0 0 0 96 96 8 24 59 24 24 7 24 59 c 0 0 0 0 0 0 0 0 0 24 9 24 24 7 24 22 g 0 0 0 0 96 0 0 0 0 24 14 24 24 9 24 8 t 0 0 0 0 0 96 0 0 88 24 14 24 24 73 24 7

4947_ap_DrosophilaTF_1.1__shift5 (4947_ap_DrosophilaTF_1.1_) 0.895 0.447 4.181 0.437 0.909 0.599 0.950 9 71 17 22 13 6 8 20.857 11
; positions_8nt_m3 versus 4947_ap_DrosophilaTF_1.1_; m=11/86; ncol2=6; w=6; offset=5; strand=D; shift=5; score=20.8571; -----TAATnn----- ; cor=0.895; Ncor=0.447; logoDP=4.181; NIcor=0.437; NsEucl=0.909; SSD=0.599; NSW=0.950; rcor=9; rNcor=71; rlogoDP=17; rNIcor=22; rNsEucl=13; rSSD=6; rNSW=8; rank_mean=20.857; match_rank=11 a 0 0 0 0 0 0 1 1 0 25 25 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 25 25 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 25 25 0 0 0 0 0 t 0 0 0 0 0 1 0 0 1 25 25 0 0 0 0 0

5218_Dlx1_DBD_HumanTF_1.0__rc_shift4 (5218_Dlx1_DBD_HumanTF_1.0__rc) 0.813 0.542 2.111 0.383 0.905 1.161 0.927 29 3 44 36 17 25 19 24.714 12
; positions_8nt_m3 versus 5218_Dlx1_DBD_HumanTF_1.0__rc; m=12/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=24.7143; ----kTAATTrs---- ; cor=0.813; Ncor=0.542; logoDP=2.111; NIcor=0.383; NsEucl=0.905; SSD=1.161; NSW=0.927; rcor=29; rNcor=3; rlogoDP=44; rNIcor=36; rNsEucl=17; rSSD=25; rNSW=19; rank_mean=24.714; match_rank=12 a 0 0 0 0 2311 702 9397 9397 236 665 4266 1663 0 0 0 0 c 0 0 0 0 1758 79 278 24 105 533 113 2631 0 0 0 0 g 0 0 0 0 2830 144 725 49 522 788 5131 2754 0 0 0 0 t 0 0 0 0 2499 9397 285 1 9397 9397 550 2349 0 0 0 0

5210_DLX5_FL_HumanTF_1.0__rc_shift4 (5210_DLX5_FL_HumanTF_1.0__rc) 0.808 0.539 1.911 0.403 0.905 1.154 0.928 31 5 58 27 15 21 17 24.857 13
; positions_8nt_m3 versus 5210_DLX5_FL_HumanTF_1.0__rc; m=13/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=24.8571; ----dTAATTrb---- ; cor=0.808; Ncor=0.539; logoDP=1.911; NIcor=0.403; NsEucl=0.905; SSD=1.154; NSW=0.928; rcor=31; rNcor=5; rlogoDP=58; rNIcor=27; rNsEucl=15; rSSD=21; rNSW=17; rank_mean=24.857; match_rank=13 a 0 0 0 0 1293 303 4235 4235 235 342 2238 846 0 0 0 0 c 0 0 0 0 730 45 201 130 141 142 51 1181 0 0 0 0 g 0 0 0 0 1117 53 129 124 224 332 1997 1126 0 0 0 0 t 0 0 0 0 1094 4235 286 155 4235 4235 318 1082 0 0 0 0

1790_MA0232.1_JASPAR_CORE_2009__shift5 (1790_MA0232.1_JASPAR_CORE_2009_) 0.875 0.437 4.038 0.445 0.899 0.741 0.938 13 79 19 19 24 10 14 25.429 14
; positions_8nt_m3 versus 1790_MA0232.1_JASPAR_CORE_2009_; m=14/86; ncol2=6; w=6; offset=5; strand=D; shift=5; score=25.4286; -----TAATkR----- ; cor=0.875; Ncor=0.437; logoDP=4.038; NIcor=0.445; NsEucl=0.899; SSD=0.741; NSW=0.938; rcor=13; rNcor=79; rlogoDP=19; rNIcor=19; rNsEucl=24; rSSD=10; rNSW=14; rank_mean=25.429; match_rank=14 a 0 0 0 0 0 0 23 23 0 1 17 0 0 0 0 0 c 0 0 0 0 0 0 0 0 5 3 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 7 6 0 0 0 0 0 t 0 0 0 0 0 23 0 0 18 12 0 0 0 0 0 0

5211_DLX6_DBD_HumanTF_1.0__rc_shift4 (5211_DLX6_DBD_HumanTF_1.0__rc) 0.810 0.540 2.245 0.380 0.903 1.200 0.925 30 4 41 40 19 27 22 26.143 15
; positions_8nt_m3 versus 5211_DLX6_DBD_HumanTF_1.0__rc; m=15/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=26.1429; ----kTAATTrs---- ; cor=0.810; Ncor=0.540; logoDP=2.245; NIcor=0.380; NsEucl=0.903; SSD=1.200; NSW=0.925; rcor=30; rNcor=4; rlogoDP=41; rNIcor=40; rNsEucl=19; rSSD=27; rNSW=22; rank_mean=26.143; match_rank=15 a 0 0 0 0 624 193 2623 2623 56 184 1212 415 0 0 0 0 c 0 0 0 0 473 16 68 0 0 143 21 680 0 0 0 0 g 0 0 0 0 823 30 140 0 124 273 1410 925 0 0 0 0 t 0 0 0 0 703 2623 48 12 2623 2623 137 602 0 0 0 0

5209_DLX4_DBD_HumanTF_1.0__rc_shift4 (5209_DLX4_DBD_HumanTF_1.0__rc) 0.806 0.537 1.982 0.383 0.904 1.179 0.926 32 6 50 35 18 26 20 26.714 16
; positions_8nt_m3 versus 5209_DLX4_DBD_HumanTF_1.0__rc; m=16/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=26.7143; ----kTAATTrs---- ; cor=0.806; Ncor=0.537; logoDP=1.982; NIcor=0.383; NsEucl=0.904; SSD=1.179; NSW=0.926; rcor=32; rNcor=6; rlogoDP=50; rNIcor=35; rNsEucl=18; rSSD=26; rNSW=20; rank_mean=26.714; match_rank=16 a 0 0 0 0 2999 1127 12054 12054 499 883 5213 1811 0 0 0 0 c 0 0 0 0 2286 134 542 38 55 739 145 3679 0 0 0 0 g 0 0 0 0 3703 316 868 85 744 1500 6841 3928 0 0 0 0 t 0 0 0 0 3065 12054 440 88 12054 12054 724 2637 0 0 0 0

6515_2vy1_A_3D-footprint_20130124__shift2 (6515_2vy1_A_3D-footprint_20130124_) 0.788 0.591 6.021 0.583 0.898 1.695 0.906 46 1 1 1 26 74 39 26.857 17
; positions_8nt_m3 versus 6515_2vy1_A_3D-footprint_20130124_; m=17/86; ncol2=9; w=9; offset=2; strand=D; shift=2; score=26.8571; --TGGTnnnTA----- ; cor=0.788; Ncor=0.591; logoDP=6.021; NIcor=0.583; NsEucl=0.898; SSD=1.695; NSW=0.906; rcor=46; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=26; rSSD=74; rNSW=39; rank_mean=26.857; match_rank=17 a 0 0 9 0 0 0 24 24 24 11 69 0 0 0 0 0 c 0 0 9 0 0 0 24 24 24 9 9 0 0 0 0 0 g 0 0 11 96 96 0 24 24 24 9 9 0 0 0 0 0 t 0 0 67 0 0 96 24 24 24 67 9 0 0 0 0 0

1767_MA0208.1_JASPAR_CORE_2009__shift5 (1767_MA0208.1_JASPAR_CORE_2009_) 0.865 0.504 4.902 0.504 0.883 1.332 0.905 17 33 5 6 54 35 42 27.429 18
; positions_8nt_m3 versus 1767_MA0208.1_JASPAR_CORE_2009_; m=18/86; ncol2=7; w=7; offset=5; strand=D; shift=5; score=27.4286; -----TAATTAA---- ; cor=0.865; Ncor=0.504; logoDP=4.902; NIcor=0.504; NsEucl=0.883; SSD=1.332; NSW=0.905; rcor=17; rNcor=33; rlogoDP=5; rNIcor=6; rNsEucl=54; rSSD=35; rNSW=42; rank_mean=27.429; match_rank=18 a 0 0 0 0 0 0 20 20 0 0 17 18 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 t 0 0 0 0 0 20 0 0 20 20 0 0 0 0 0 0

5219_Dlx2_DBD_HumanTF_1.0__rc_shift4 (5219_Dlx2_DBD_HumanTF_1.0__rc) 0.797 0.532 2.534 0.396 0.898 1.341 0.916 39 9 36 28 27 38 29 29.429 19
; positions_8nt_m3 versus 5219_Dlx2_DBD_HumanTF_1.0__rc; m=19/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=29.4286; ----wTAATTrs---- ; cor=0.797; Ncor=0.532; logoDP=2.534; NIcor=0.396; NsEucl=0.898; SSD=1.341; NSW=0.916; rcor=39; rNcor=9; rlogoDP=36; rNIcor=28; rNsEucl=27; rSSD=38; rNSW=29; rank_mean=29.429; match_rank=19 a 0 0 0 0 3697 579 13749 13749 179 524 6340 2275 0 0 0 0 c 0 0 0 0 3065 55 565 0 15 488 135 4739 0 0 0 0 g 0 0 0 0 3277 46 393 0 289 684 7409 3565 0 0 0 0 t 0 0 0 0 3710 13749 260 0 13749 13749 543 3170 0 0 0 0

5504_LMX1B_full_HumanTF_1.0__rc_shift4 (5504_LMX1B_full_HumanTF_1.0__rc) 0.788 0.525 2.120 0.395 0.900 1.282 0.920 45 12 43 29 22 31 25 29.571 20
; positions_8nt_m3 versus 5504_LMX1B_full_HumanTF_1.0__rc; m=20/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=29.5714; ----kTAATTrr---- ; cor=0.788; Ncor=0.525; logoDP=2.120; NIcor=0.395; NsEucl=0.900; SSD=1.282; NSW=0.920; rcor=45; rNcor=12; rlogoDP=43; rNIcor=29; rNsEucl=22; rSSD=31; rNSW=25; rank_mean=29.571; match_rank=20 a 0 0 0 0 131 46 717 717 70 0 397 214 0 0 0 0 c 0 0 0 0 75 51 0 0 0 4 34 174 0 0 0 0 g 0 0 0 0 211 0 53 8 89 177 319 288 0 0 0 0 t 0 0 0 0 299 717 88 0 717 717 0 41 0 0 0 0

5208_DLX3_DBD_HumanTF_1.0__rc_shift4 (5208_DLX3_DBD_HumanTF_1.0__rc) 0.805 0.537 1.780 0.378 0.905 1.156 0.928 33 7 69 43 16 22 18 29.714 21
; positions_8nt_m3 versus 5208_DLX3_DBD_HumanTF_1.0__rc; m=21/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=29.7143; ----kTAATTrs---- ; cor=0.805; Ncor=0.537; logoDP=1.780; NIcor=0.378; NsEucl=0.905; SSD=1.156; NSW=0.928; rcor=33; rNcor=7; rlogoDP=69; rNIcor=43; rNsEucl=16; rSSD=22; rNSW=18; rank_mean=29.714; match_rank=21 a 0 0 0 0 1809 691 7323 7323 299 643 3190 1208 0 0 0 0 c 0 0 0 0 1356 101 452 60 62 587 164 2079 0 0 0 0 g 0 0 0 0 2131 202 535 66 536 995 4133 2338 0 0 0 0 t 0 0 0 0 2027 7323 399 173 7323 7323 572 1697 0 0 0 0

1782_MA0223.1_JASPAR_CORE_2009__MA0224.1_JASPAR_CORE_2009__shift4 (1782_MA0223.1_JASPAR_CORE_2009__MA0224.1_JASPAR_CORE_2009_) 0.828 0.483 4.811 0.459 0.884 1.324 0.905 25 44 8 15 53 34 41 31.429 22
; positions_8nt_m3 versus 1782_MA0223.1_JASPAR_CORE_2009__MA0224.1_JASPAR_CORE_2009_; m=22/86; ncol2=7; w=7; offset=4; strand=D; shift=4; score=31.4286; ----bTAATTA----- ; cor=0.828; Ncor=0.483; logoDP=4.811; NIcor=0.459; NsEucl=0.884; SSD=1.324; NSW=0.905; rcor=25; rNcor=44; rlogoDP=8; rNIcor=15; rNsEucl=53; rSSD=34; rNSW=41; rank_mean=31.429; match_rank=22 a 0 0 0 0 0 0 23 23 0 1 20 0 0 0 0 0 c 0 0 0 0 7 0 0 0 0 1 0 0 0 0 0 0 g 0 0 0 0 10 0 0 0 0 0 3 0 0 0 0 0 t 0 0 0 0 6 23 0 0 23 21 0 0 0 0 0 0

5207_DLX2_DBD_HumanTF_1.0__rc_shift4 (5207_DLX2_DBD_HumanTF_1.0__rc) 0.800 0.533 1.349 0.355 0.906 1.135 0.929 36 8 81 50 14 20 16 32.143 23
; positions_8nt_m3 versus 5207_DLX2_DBD_HumanTF_1.0__rc; m=23/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=32.1429; ----kTAATtrs---- ; cor=0.800; Ncor=0.533; logoDP=1.349; NIcor=0.355; NsEucl=0.906; SSD=1.135; NSW=0.929; rcor=36; rNcor=8; rlogoDP=81; rNIcor=50; rNsEucl=14; rSSD=20; rNSW=16; rank_mean=32.143; match_rank=23 a 0 0 0 0 3845 2643 16994 16994 1359 2386 6403 2951 0 0 0 0 c 0 0 0 0 3389 483 1382 243 234 2070 480 4510 0 0 0 0 g 0 0 0 0 5264 693 2495 325 2122 3625 10590 5705 0 0 0 0 t 0 0 0 0 4496 16994 1259 450 16994 16994 1956 3827 0 0 0 0

5922_Vsx1_DBD_HumanTF_1.0__rc_shift4 (5922_Vsx1_DBD_HumanTF_1.0__rc) 0.789 0.526 1.800 0.369 0.901 1.259 0.921 44 11 67 44 21 29 24 34.286 24
; positions_8nt_m3 versus 5922_Vsx1_DBD_HumanTF_1.0__rc; m=24/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=34.2857; ----yTAATTrr---- ; cor=0.789; Ncor=0.526; logoDP=1.800; NIcor=0.369; NsEucl=0.901; SSD=1.259; NSW=0.921; rcor=44; rNcor=11; rlogoDP=67; rNIcor=44; rNsEucl=21; rSSD=29; rNSW=24; rank_mean=34.286; match_rank=24 a 0 0 0 0 2112 987 12029 12029 361 1041 5782 3109 0 0 0 0 c 0 0 0 0 3109 217 506 31 309 1053 626 2152 0 0 0 0 g 0 0 0 0 2961 464 1014 101 825 1424 6246 4996 0 0 0 0 t 0 0 0 0 3847 12029 559 134 12029 12029 1094 1772 0 0 0 0

2465_MA0075.1_JASPAR_CORE_2009__rc_shift5 (2465_MA0075.1_JASPAR_CORE_2009__rc) 0.983 0.410 1.577 0.069 0.935 0.211 0.979 1 85 77 81 1 1 1 35.286 25
; positions_8nt_m3 versus 2465_MA0075.1_JASPAR_CORE_2009__rc; m=25/86; ncol2=5; w=5; offset=5; strand=R; shift=5; score=35.2857; -----TAATT------ ; cor=0.983; Ncor=0.410; logoDP=1.577; NIcor=0.069; NsEucl=0.935; SSD=0.211; NSW=0.979; rcor=1; rNcor=85; rlogoDP=77; rNIcor=81; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=35.286; match_rank=25 a 0 0 0 0 0 0 59 58 0 1 0 0 0 0 0 0 c 0 0 0 0 0 1 0 1 0 4 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 t 0 0 0 0 0 58 0 0 59 52 0 0 0 0 0 0

1731_MA0172.1_JASPAR_CORE_2009__rc_shift5 (1731_MA0172.1_JASPAR_CORE_2009__rc) 0.866 0.505 2.681 0.219 0.886 1.281 0.909 16 31 31 59 47 30 35 35.571 26
; positions_8nt_m3 versus 1731_MA0172.1_JASPAR_CORE_2009__rc; m=26/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=35.5714; -----TAATTAA---- ; cor=0.866; Ncor=0.505; logoDP=2.681; NIcor=0.219; NsEucl=0.886; SSD=1.281; NSW=0.909; rcor=16; rNcor=31; rlogoDP=31; rNIcor=59; rNsEucl=47; rSSD=30; rNSW=35; rank_mean=35.571; match_rank=26 a 0 0 0 0 0 0 15 15 0 0 13 12 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 t 0 0 0 0 0 15 0 0 15 15 0 0 0 0 0 0

5909_UNCX_DBD_2_HumanTF_1.0__rc_shift4 (5909_UNCX_DBD_2_HumanTF_1.0__rc) 0.775 0.517 1.855 0.387 0.898 1.337 0.916 54 17 63 32 25 36 28 36.429 27
; positions_8nt_m3 versus 5909_UNCX_DBD_2_HumanTF_1.0__rc; m=27/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=36.4286; ----yTAATTrr---- ; cor=0.775; Ncor=0.517; logoDP=1.855; NIcor=0.387; NsEucl=0.898; SSD=1.337; NSW=0.916; rcor=54; rNcor=17; rlogoDP=63; rNIcor=32; rNsEucl=25; rSSD=36; rNSW=28; rank_mean=36.429; match_rank=27 a 0 0 0 0 4810 3885 36926 36926 890 2629 20126 12871 0 0 0 0 c 0 0 0 0 10480 731 1782 117 420 4582 2086 5711 0 0 0 0 g 0 0 0 0 7825 2211 3958 806 1302 2540 16800 13363 0 0 0 0 t 0 0 0 0 13811 36926 3111 481 36926 36926 3975 4980 0 0 0 0

5683_PRRX2_full_HumanTF_1.0__rc_shift4 (5683_PRRX2_full_HumanTF_1.0__rc) 0.779 0.519 1.708 0.366 0.899 1.294 0.919 52 16 71 46 23 32 27 38.143 28
; positions_8nt_m3 versus 5683_PRRX2_full_HumanTF_1.0__rc; m=28/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=38.1429; ----yTAATTrr---- ; cor=0.779; Ncor=0.519; logoDP=1.708; NIcor=0.366; NsEucl=0.899; SSD=1.294; NSW=0.919; rcor=52; rNcor=16; rlogoDP=71; rNIcor=46; rNsEucl=23; rSSD=32; rNSW=27; rank_mean=38.143; match_rank=28 a 0 0 0 0 702 400 3849 3849 70 298 1797 969 0 0 0 0 c 0 0 0 0 1035 39 239 11 124 412 250 715 0 0 0 0 g 0 0 0 0 878 198 504 22 232 361 2052 1522 0 0 0 0 t 0 0 0 0 1234 3849 466 13 3849 3849 407 644 0 0 0 0

5680_PRRX1_DBD_HumanTF_1.0__rc_shift4 (5680_PRRX1_DBD_HumanTF_1.0__rc) 0.773 0.515 2.229 0.382 0.894 1.438 0.910 55 18 42 37 33 48 34 38.143 29
; positions_8nt_m3 versus 5680_PRRX1_DBD_HumanTF_1.0__rc; m=29/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=38.1429; ----yTAATTrr---- ; cor=0.773; Ncor=0.515; logoDP=2.229; NIcor=0.382; NsEucl=0.894; SSD=1.438; NSW=0.910; rcor=55; rNcor=18; rlogoDP=42; rNIcor=37; rNsEucl=33; rSSD=48; rNSW=34; rank_mean=38.143; match_rank=29 a 0 0 0 0 3765 1229 23897 23897 209 810 12775 6364 0 0 0 0 c 0 0 0 0 6366 136 1004 0 202 1776 1121 4339 0 0 0 0 g 0 0 0 0 4269 644 2302 3 503 1088 11122 9063 0 0 0 0 t 0 0 0 0 9498 23897 1264 0 23897 23897 2373 4132 0 0 0 0

6061_1fjl_B_3D-footprint_20130124__rc_shift4 (6061_1fjl_B_3D-footprint_20130124__rc) 0.850 0.496 1.285 0.076 0.902 0.933 0.933 19 39 82 79 20 15 15 38.429 30
; positions_8nt_m3 versus 6061_1fjl_B_3D-footprint_20130124__rc; m=30/86; ncol2=7; w=7; offset=4; strand=R; shift=4; score=38.4286; ----gTAATna----- ; cor=0.850; Ncor=0.496; logoDP=1.285; NIcor=0.076; NsEucl=0.902; SSD=0.933; NSW=0.933; rcor=19; rNcor=39; rlogoDP=82; rNIcor=79; rNsEucl=20; rSSD=15; rNSW=15; rank_mean=38.429; match_rank=30 a 0 0 0 0 12 0 96 96 0 24 60 0 0 0 0 0 c 0 0 0 0 12 0 0 0 12 24 12 0 0 0 0 0 g 0 0 0 0 60 0 0 0 0 24 12 0 0 0 0 0 t 0 0 0 0 12 96 0 0 84 24 12 0 0 0 0 0

2645_MA0426.1_JASPAR_CORE_2009__shift5 (2645_MA0426.1_JASPAR_CORE_2009_) 0.875 0.437 4.855 0.428 0.873 1.157 0.904 14 80 6 24 75 23 47 38.429 31
; positions_8nt_m3 versus 2645_MA0426.1_JASPAR_CORE_2009_; m=31/86; ncol2=6; w=6; offset=5; strand=D; shift=5; score=38.4286; -----TAATTG----- ; cor=0.875; Ncor=0.437; logoDP=4.855; NIcor=0.428; NsEucl=0.873; SSD=1.157; NSW=0.904; rcor=14; rNcor=80; rlogoDP=6; rNIcor=24; rNsEucl=75; rSSD=23; rNSW=47; rank_mean=38.429; match_rank=31 a 0 0 0 0 0 0 203 203 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 203 0 0 0 0 0 t 0 0 0 0 0 203 0 0 203 203 0 0 0 0 0 0

2710_PF0023.1_JASPAR_CORE_2009__shift5 (2710_PF0023.1_JASPAR_CORE_2009_) 0.875 0.437 4.855 0.428 0.873 1.157 0.904 14 80 6 24 75 23 47 38.429 32
; positions_8nt_m3 versus 2710_PF0023.1_JASPAR_CORE_2009_; m=32/86; ncol2=6; w=6; offset=5; strand=D; shift=5; score=38.4286; -----TAATTA----- ; cor=0.875; Ncor=0.437; logoDP=4.855; NIcor=0.428; NsEucl=0.873; SSD=1.157; NSW=0.904; rcor=14; rNcor=80; rlogoDP=6; rNIcor=24; rNsEucl=75; rSSD=23; rNSW=47; rank_mean=38.429; match_rank=32 a 0 0 0 0 0 0 2256 2256 0 0 2256 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0 2256 0 0 2256 2256 0 0 0 0 0 0

1742_MA0183.1_JASPAR_CORE_2009__rc_shift5 (1742_MA0183.1_JASPAR_CORE_2009__rc) 0.859 0.463 0.422 -0.064 0.913 0.749 0.946 18 58 85 83 9 11 11 39.286 33
; positions_8nt_m3 versus 1742_MA0183.1_JASPAR_CORE_2009__rc; m=33/86; ncol2=8; w=7; offset=5; strand=R; shift=5; score=39.2857; -----TWATTmRw--- ; cor=0.859; Ncor=0.463; logoDP=0.422; NIcor=-0.064; NsEucl=0.913; SSD=0.749; NSW=0.946; rcor=18; rNcor=58; rlogoDP=85; rNIcor=83; rNsEucl=9; rSSD=11; rNSW=11; rank_mean=39.286; match_rank=33 a 0 0 0 0 0 0 18 20 0 3 13 19 14 0 0 0 c 0 0 0 0 0 4 1 3 0 2 7 0 2 0 0 0 g 0 0 0 0 0 0 0 3 0 0 6 7 3 0 0 0 t 0 0 0 0 0 22 7 0 26 21 0 0 7 0 0 0

5681_PRRX1_full_1_HumanTF_1.0__rc_shift4 (5681_PRRX1_full_1_HumanTF_1.0__rc) 0.767 0.511 2.072 0.383 0.895 1.420 0.911 64 23 46 34 32 46 33 39.714 34
; positions_8nt_m3 versus 5681_PRRX1_full_1_HumanTF_1.0__rc; m=34/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=39.7143; ----yTAATTrg---- ; cor=0.767; Ncor=0.511; logoDP=2.072; NIcor=0.383; NsEucl=0.895; SSD=1.420; NSW=0.911; rcor=64; rNcor=23; rlogoDP=46; rNIcor=34; rNsEucl=32; rSSD=46; rNSW=33; rank_mean=39.714; match_rank=34 a 0 0 0 0 1693 979 10177 10177 307 532 5066 2523 0 0 0 0 c 0 0 0 0 2968 57 438 0 117 640 326 1746 0 0 0 0 g 0 0 0 0 2230 709 1210 28 358 764 5111 4493 0 0 0 0 t 0 0 0 0 3287 10177 547 57 10177 10177 684 1414 0 0 0 0

6262_1puf_A_3D-footprint_20130124__rc_shift1 (6262_1puf_A_3D-footprint_20130124__rc) 0.847 0.494 1.663 0.070 0.895 1.083 0.923 20 40 73 80 30 19 23 40.714 35
; positions_8nt_m3 versus 6262_1puf_A_3D-footprint_20130124__rc; m=35/86; ncol2=7; w=7; offset=1; strand=R; shift=1; score=40.7143; -gtnGTAA-------- ; cor=0.847; Ncor=0.494; logoDP=1.663; NIcor=0.070; NsEucl=0.895; SSD=1.083; NSW=0.923; rcor=20; rNcor=40; rlogoDP=73; rNIcor=80; rNsEucl=30; rSSD=19; rNSW=23; rank_mean=40.714; match_rank=35 a 0 9 9 24 0 0 96 76 0 0 0 0 0 0 0 0 c 0 11 9 24 0 0 0 9 0 0 0 0 0 0 0 0 g 0 57 19 24 96 0 0 9 0 0 0 0 0 0 0 0 t 0 19 59 24 0 96 0 2 0 0 0 0 0 0 0 0

5258_EN1_full_1_HumanTF_1.0__rc_shift4 (5258_EN1_full_1_HumanTF_1.0__rc) 0.769 0.512 2.738 0.394 0.890 1.539 0.904 63 22 29 31 37 59 45 40.857 36
; positions_8nt_m3 versus 5258_EN1_full_1_HumanTF_1.0__rc; m=36/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=40.8571; ----cTAATTrs---- ; cor=0.769; Ncor=0.512; logoDP=2.738; NIcor=0.394; NsEucl=0.890; SSD=1.539; NSW=0.904; rcor=63; rNcor=22; rlogoDP=29; rNIcor=31; rNsEucl=37; rSSD=59; rNSW=45; rank_mean=40.857; match_rank=36 a 0 0 0 0 302 132 2891 2891 0 0 1562 525 0 0 0 0 c 0 0 0 0 1216 30 162 0 0 71 5 765 0 0 0 0 g 0 0 0 0 683 0 483 0 28 99 1328 1174 0 0 0 0 t 0 0 0 0 689 2891 57 0 2891 2891 104 427 0 0 0 0

5561_Meox2_DBD_HumanTF_1.0__shift4 (5561_Meox2_DBD_HumanTF_1.0_) 0.753 0.502 2.668 0.474 0.892 1.501 0.906 83 35 32 11 35 52 38 40.857 37
; positions_8nt_m3 versus 5561_Meox2_DBD_HumanTF_1.0_; m=37/86; ncol2=8; w=8; offset=4; strand=D; shift=4; score=40.8571; ----kTAATkAc---- ; cor=0.753; Ncor=0.502; logoDP=2.668; NIcor=0.474; NsEucl=0.892; SSD=1.501; NSW=0.906; rcor=83; rNcor=35; rlogoDP=32; rNIcor=11; rNsEucl=35; rSSD=52; rNSW=38; rank_mean=40.857; match_rank=37 a 0 0 0 0 1001 139 4702 4702 0 28 4702 1121 0 0 0 0 c 0 0 0 0 967 762 0 67 236 287 27 1471 0 0 0 0 g 0 0 0 0 1395 219 549 0 51 1603 833 1173 0 0 0 0 t 0 0 0 0 1339 4702 211 26 4702 3099 259 937 0 0 0 0

5751_SHOX_DBD_HumanTF_1.0__rc_shift4 (5751_SHOX_DBD_HumanTF_1.0__rc) 0.772 0.514 2.505 0.380 0.891 1.510 0.906 59 19 37 41 36 55 40 41.000 38
; positions_8nt_m3 versus 5751_SHOX_DBD_HumanTF_1.0__rc; m=38/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score= 41; ----yTAATTrr---- ; cor=0.772; Ncor=0.514; logoDP=2.505; NIcor=0.380; NsEucl=0.891; SSD=1.510; NSW=0.906; rcor=59; rNcor=19; rlogoDP=37; rNIcor=41; rNsEucl=36; rSSD=55; rNSW=40; rank_mean=41.000; match_rank=38 a 0 0 0 0 3837 1377 29223 29223 146 1412 14932 8292 0 0 0 0 c 0 0 0 0 9324 35 825 0 0 986 684 5441 0 0 0 0 g 0 0 0 0 5060 243 1143 48 346 1248 14291 11134 0 0 0 0 t 0 0 0 0 11002 29223 1210 0 29223 29223 2144 4357 0 0 0 0

1737_MA0178.1_JASPAR_CORE_2009__rc_shift5 (1737_MA0178.1_JASPAR_CORE_2009__rc) 0.830 0.484 1.880 0.183 0.889 1.206 0.914 24 43 61 64 39 28 30 41.286 39
; positions_8nt_m3 versus 1737_MA0178.1_JASPAR_CORE_2009__rc; m=39/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=41.2857; -----TAATTAA---- ; cor=0.830; Ncor=0.484; logoDP=1.880; NIcor=0.183; NsEucl=0.889; SSD=1.206; NSW=0.914; rcor=24; rNcor=43; rlogoDP=61; rNIcor=64; rNsEucl=39; rSSD=28; rNSW=30; rank_mean=41.286; match_rank=39 a 0 0 0 0 0 0 18 18 0 2 17 13 0 0 0 0 c 0 0 0 0 0 4 1 1 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 t 0 0 0 0 0 15 0 0 19 17 2 2 0 0 0 0

5541_MSX1_full_HumanTF_1.0__rc_shift4 (5541_MSX1_full_HumanTF_1.0__rc) 0.772 0.514 2.343 0.346 0.893 1.475 0.908 60 20 39 51 34 50 36 41.429 40
; positions_8nt_m3 versus 5541_MSX1_full_HumanTF_1.0__rc; m=40/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=41.4286; ----bTAATTrs---- ; cor=0.772; Ncor=0.514; logoDP=2.343; NIcor=0.346; NsEucl=0.893; SSD=1.475; NSW=0.908; rcor=60; rNcor=20; rlogoDP=39; rNIcor=51; rNsEucl=34; rSSD=50; rNSW=36; rank_mean=41.429; match_rank=40 a 0 0 0 0 460 91 3073 3073 0 16 956 501 0 0 0 0 c 0 0 0 0 945 105 251 31 0 139 33 787 0 0 0 0 g 0 0 0 0 814 118 205 0 107 332 2117 1324 0 0 0 0 t 0 0 0 0 855 3073 63 0 3073 3073 82 461 0 0 0 0

1754_MA0195.1_JASPAR_CORE_2009__rc_shift5 (1754_MA0195.1_JASPAR_CORE_2009__rc) 0.819 0.478 1.390 0.147 0.897 1.044 0.925 27 46 80 72 29 17 21 41.714 41
; positions_8nt_m3 versus 1754_MA0195.1_JASPAR_CORE_2009__rc; m=41/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=41.7143; -----TAATTAr---- ; cor=0.819; Ncor=0.478; logoDP=1.390; NIcor=0.147; NsEucl=0.897; SSD=1.044; NSW=0.925; rcor=27; rNcor=46; rlogoDP=80; rNIcor=72; rNsEucl=29; rSSD=17; rNSW=21; rank_mean=41.714; match_rank=41 a 0 0 0 0 0 0 14 20 0 1 16 8 0 0 0 0 c 0 0 0 0 0 4 4 0 0 3 0 2 0 0 0 0 g 0 0 0 0 0 0 2 0 0 0 0 7 0 0 0 0 t 0 0 0 0 0 16 0 0 20 16 4 3 0 0 0 0

5701_RAXL1_DBD_HumanTF_1.0__rc_shift4 (5701_RAXL1_DBD_HumanTF_1.0__rc) 0.762 0.508 1.863 0.381 0.895 1.418 0.911 70 26 62 38 31 45 32 43.429 42
; positions_8nt_m3 versus 5701_RAXL1_DBD_HumanTF_1.0__rc; m=42/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=43.4286; ----yTAATTrr---- ; cor=0.762; Ncor=0.508; logoDP=1.863; NIcor=0.381; NsEucl=0.895; SSD=1.418; NSW=0.911; rcor=70; rNcor=26; rlogoDP=62; rNIcor=38; rNsEucl=31; rSSD=45; rNSW=32; rank_mean=43.429; match_rank=42 a 0 0 0 0 5601 4258 38860 38860 1030 2421 19215 10666 0 0 0 0 c 0 0 0 0 12362 360 2513 125 757 4490 1688 7049 0 0 0 0 g 0 0 0 0 7487 2644 4232 738 1523 3060 19645 15810 0 0 0 0 t 0 0 0 0 13411 38860 2167 270 38860 38860 3558 5334 0 0 0 0

5687_Prrx2_DBD_HumanTF_1.0__rc_shift4 (5687_Prrx2_DBD_HumanTF_1.0__rc) 0.758 0.505 2.634 0.408 0.888 1.594 0.900 77 30 34 26 40 64 52 46.143 43
; positions_8nt_m3 versus 5687_Prrx2_DBD_HumanTF_1.0__rc; m=43/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=46.1429; ----yTAATTrr---- ; cor=0.758; Ncor=0.505; logoDP=2.634; NIcor=0.408; NsEucl=0.888; SSD=1.594; NSW=0.900; rcor=77; rNcor=30; rlogoDP=34; rNIcor=26; rNsEucl=40; rSSD=64; rNSW=52; rank_mean=46.143; match_rank=43 a 0 0 0 0 802 279 4975 4975 77 183 3118 1416 0 0 0 0 c 0 0 0 0 1658 93 28 0 0 272 186 820 0 0 0 0 g 0 0 0 0 705 267 304 0 12 175 1857 1893 0 0 0 0 t 0 0 0 0 1810 4975 0 0 4975 4975 393 845 0 0 0 0

1747_MA0188.1_JASPAR_CORE_2009__rc_shift5 (1747_MA0188.1_JASPAR_CORE_2009__rc) 0.843 0.492 1.736 0.104 0.885 1.299 0.907 22 41 70 78 49 33 37 47.143 44
; positions_8nt_m3 versus 1747_MA0188.1_JASPAR_CORE_2009__rc; m=44/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=47.1429; -----TAATTGs---- ; cor=0.843; Ncor=0.492; logoDP=1.736; NIcor=0.104; NsEucl=0.885; SSD=1.299; NSW=0.907; rcor=22; rNcor=41; rlogoDP=70; rNIcor=78; rNsEucl=49; rSSD=33; rNSW=37; rank_mean=47.143; match_rank=44 a 0 0 0 0 0 0 21 21 0 0 5 1 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 16 13 0 0 0 0 t 0 0 0 0 0 21 0 0 21 21 0 1 0 0 0 0

5564_Msx3_DBD_2_HumanTF_1.0__rc_shift4 (5564_Msx3_DBD_2_HumanTF_1.0__rc) 0.769 0.513 2.776 0.356 0.888 1.617 0.899 62 21 28 49 44 69 58 47.286 45
; positions_8nt_m3 versus 5564_Msx3_DBD_2_HumanTF_1.0__rc; m=45/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=47.2857; ----yTAATTrs---- ; cor=0.769; Ncor=0.513; logoDP=2.776; NIcor=0.356; NsEucl=0.888; SSD=1.617; NSW=0.899; rcor=62; rNcor=21; rlogoDP=28; rNIcor=49; rNsEucl=44; rSSD=69; rNSW=58; rank_mean=47.286; match_rank=45 a 0 0 0 0 1360 213 8380 8380 5 94 2582 1256 0 0 0 0 c 0 0 0 0 2595 88 105 0 38 237 29 2496 0 0 0 0 g 0 0 0 0 1737 59 215 0 89 160 5798 3247 0 0 0 0 t 0 0 0 0 2689 8380 121 0 8380 8380 312 1381 0 0 0 0

5817_Shox2_DBD_HumanTF_1.0__rc_shift4 (5817_Shox2_DBD_HumanTF_1.0__rc) 0.761 0.507 2.625 0.380 0.888 1.603 0.900 71 27 35 39 41 66 53 47.429 46
; positions_8nt_m3 versus 5817_Shox2_DBD_HumanTF_1.0__rc; m=46/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=47.4286; ----yTAATTrr---- ; cor=0.761; Ncor=0.507; logoDP=2.625; NIcor=0.380; NsEucl=0.888; SSD=1.603; NSW=0.900; rcor=71; rNcor=27; rlogoDP=35; rNIcor=39; rNsEucl=41; rSSD=66; rNSW=53; rank_mean=47.429; match_rank=46 a 0 0 0 0 2278 895 18179 18179 79 766 9152 4802 0 0 0 0 c 0 0 0 0 6337 36 870 0 3 426 228 3292 0 0 0 0 g 0 0 0 0 3021 193 545 12 138 626 9027 7695 0 0 0 0 t 0 0 0 0 6542 18179 597 29 18179 18179 979 2390 0 0 0 0

1798_MA0240.1_JASPAR_CORE_2009__rc_shift5 (1798_MA0240.1_JASPAR_CORE_2009__rc) 0.824 0.480 1.994 0.185 0.881 1.383 0.901 26 45 49 63 59 41 51 47.714 47
; positions_8nt_m3 versus 1798_MA0240.1_JASPAR_CORE_2009__rc; m=47/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=47.7143; -----YAATTAa---- ; cor=0.824; Ncor=0.480; logoDP=1.994; NIcor=0.185; NsEucl=0.881; SSD=1.383; NSW=0.901; rcor=26; rNcor=45; rlogoDP=49; rNIcor=63; rNsEucl=59; rSSD=41; rNSW=51; rank_mean=47.714; match_rank=47 a 0 0 0 0 0 0 28 28 0 1 27 19 0 0 0 0 c 0 0 0 0 0 7 0 0 0 0 0 4 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 t 0 0 0 0 0 21 0 0 28 27 1 1 0 0 0 0

1759_MA0200.1_JASPAR_CORE_2009__shift4 (1759_MA0200.1_JASPAR_CORE_2009_) 0.787 0.459 4.735 0.449 0.875 1.527 0.891 48 63 10 17 71 57 71 48.143 48
; positions_8nt_m3 versus 1759_MA0200.1_JASPAR_CORE_2009_; m=48/86; ncol2=7; w=7; offset=4; strand=D; shift=4; score=48.1429; ----mTAATTr----- ; cor=0.787; Ncor=0.459; logoDP=4.735; NIcor=0.449; NsEucl=0.875; SSD=1.527; NSW=0.891; rcor=48; rNcor=63; rlogoDP=10; rNIcor=17; rNsEucl=71; rSSD=57; rNSW=71; rank_mean=48.143; match_rank=48 a 0 0 0 0 6 0 21 21 0 0 13 0 0 0 0 0 c 0 0 0 0 8 0 0 0 0 1 1 0 0 0 0 0 g 0 0 0 0 3 0 0 0 0 0 6 0 0 0 0 0 t 0 0 0 0 4 21 0 0 21 20 1 0 0 0 0 0

1794_MA0236.1_JASPAR_CORE_2009__rc_shift5 (1794_MA0236.1_JASPAR_CORE_2009__rc) 0.802 0.468 1.889 0.193 0.883 1.339 0.904 34 49 60 61 55 37 43 48.429 49
; positions_8nt_m3 versus 1794_MA0236.1_JASPAR_CORE_2009__rc; m=49/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=48.4286; -----TAATTAr---- ; cor=0.802; Ncor=0.468; logoDP=1.889; NIcor=0.193; NsEucl=0.883; SSD=1.339; NSW=0.904; rcor=34; rNcor=49; rlogoDP=60; rNIcor=61; rNsEucl=55; rSSD=37; rNSW=43; rank_mean=48.429; match_rank=49 a 0 0 0 0 0 2 15 20 0 0 19 11 0 0 0 0 c 0 0 0 0 0 3 4 0 0 0 0 2 0 0 0 0 g 0 0 0 0 0 0 1 0 0 0 1 6 0 0 0 0 t 0 0 0 0 0 15 0 0 20 20 0 1 0 0 0 0

5540_MSX1_DBD_2_HumanTF_1.0__rc_shift4 (5540_MSX1_DBD_2_HumanTF_1.0__rc) 0.764 0.509 2.789 0.362 0.887 1.642 0.897 68 25 26 47 46 71 61 49.143 50
; positions_8nt_m3 versus 5540_MSX1_DBD_2_HumanTF_1.0__rc; m=50/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=49.1429; ----yTAATTrs---- ; cor=0.764; Ncor=0.509; logoDP=2.789; NIcor=0.362; NsEucl=0.887; SSD=1.642; NSW=0.897; rcor=68; rNcor=25; rlogoDP=26; rNIcor=47; rNsEucl=46; rSSD=71; rNSW=61; rank_mean=49.143; match_rank=50 a 0 0 0 0 2314 467 13289 13289 0 76 4202 1849 0 0 0 0 c 0 0 0 0 3719 206 224 0 0 380 93 4166 0 0 0 0 g 0 0 0 0 2598 25 427 0 0 396 9087 5096 0 0 0 0 t 0 0 0 0 4658 13289 366 0 13289 13289 461 2178 0 0 0 0

5479_ISX_DBD_2_HumanTF_1.0__rc_shift4 (5479_ISX_DBD_2_HumanTF_1.0__rc) 0.764 0.509 2.724 0.360 0.887 1.630 0.898 67 24 30 48 45 70 60 49.143 51
; positions_8nt_m3 versus 5479_ISX_DBD_2_HumanTF_1.0__rc; m=51/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=49.1429; ----yTAATTrg---- ; cor=0.764; Ncor=0.509; logoDP=2.724; NIcor=0.360; NsEucl=0.887; SSD=1.630; NSW=0.898; rcor=67; rNcor=24; rlogoDP=30; rNIcor=48; rNsEucl=45; rSSD=70; rNSW=60; rank_mean=49.143; match_rank=51 a 0 0 0 0 2603 744 19154 19154 72 571 8127 4429 0 0 0 0 c 0 0 0 0 5442 68 248 0 0 286 283 2902 0 0 0 0 g 0 0 0 0 3922 143 458 0 175 867 11027 9764 0 0 0 0 t 0 0 0 0 7187 19154 380 0 19154 19154 878 2059 0 0 0 0

6487_2p5l_D_3D-footprint_20130124__shift6 (6487_2p5l_D_3D-footprint_20130124_) 0.814 0.407 1.458 0.368 0.879 1.055 0.912 28 86 79 45 63 18 31 50.000 52
; positions_8nt_m3 versus 6487_2p5l_D_3D-footprint_20130124_; m=52/86; ncol2=6; w=6; offset=6; strand=D; shift=6; score= 50; ------AATTCA---- ; cor=0.814; Ncor=0.407; logoDP=1.458; NIcor=0.368; NsEucl=0.879; SSD=1.055; NSW=0.912; rcor=28; rNcor=86; rlogoDP=79; rNIcor=45; rNsEucl=63; rSSD=18; rNSW=31; rank_mean=50.000; match_rank=52 a 0 0 0 0 0 0 67 96 9 9 0 96 0 0 0 0 c 0 0 0 0 0 0 9 0 9 11 96 0 0 0 0 0 g 0 0 0 0 0 0 9 0 9 9 0 0 0 0 0 0 t 0 0 0 0 0 0 11 0 69 67 0 0 0 0 0 0

1757_MA0198.1_JASPAR_CORE_2009__MA0455.1_JASPAR_CORE_2009__shift4 (1757_MA0198.1_JASPAR_CORE_2009__MA0455.1_JASPAR_CORE_2009_) 0.785 0.458 4.925 0.450 0.872 1.602 0.886 49 64 4 16 78 65 77 50.429 53
; positions_8nt_m3 versus 1757_MA0198.1_JASPAR_CORE_2009__MA0455.1_JASPAR_CORE_2009_; m=53/86; ncol2=7; w=7; offset=4; strand=D; shift=4; score=50.4286; ----yTAATTr----- ; cor=0.785; Ncor=0.458; logoDP=4.925; NIcor=0.450; NsEucl=0.872; SSD=1.602; NSW=0.886; rcor=49; rNcor=64; rlogoDP=4; rNIcor=16; rNsEucl=78; rSSD=65; rNSW=77; rank_mean=50.429; match_rank=53 a 0 0 0 0 0 0 22 22 0 0 13 0 0 0 0 0 c 0 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 4 0 0 0 0 0 8 0 0 0 0 0 t 0 0 0 0 7 22 0 0 22 22 1 0 0 0 0 0

5419_HOXA2_DBD_HumanTF_1.0__rc_shift3 (5419_HOXA2_DBD_HumanTF_1.0__rc) 0.755 0.522 1.955 0.344 0.897 1.725 0.904 82 14 53 52 28 80 44 50.429 54
; positions_8nt_m3 versus 5419_HOXA2_DBD_HumanTF_1.0__rc; m=54/86; ncol2=10; w=9; offset=3; strand=R; shift=3; score=50.4286; ---gsTAATkrss--- ; cor=0.755; Ncor=0.522; logoDP=1.955; NIcor=0.344; NsEucl=0.897; SSD=1.725; NSW=0.904; rcor=82; rNcor=14; rlogoDP=53; rNIcor=52; rNsEucl=28; rSSD=80; rNSW=44; rank_mean=50.429; match_rank=54 a 0 0 0 1520 1108 336 8985 8985 41 204 6221 1355 1801 0 0 0 c 0 0 0 2040 2840 31 0 6 491 651 513 2663 2370 0 0 0 g 0 0 0 3786 2849 135 1247 0 344 3128 2764 3394 2619 0 0 0 t 0 0 0 1640 2188 8985 161 0 8985 5858 906 1574 2196 0 0 0

5750_SHOX2_DBD_HumanTF_1.0__rc_shift4 (5750_SHOX2_DBD_HumanTF_1.0__rc) 0.756 0.504 2.496 0.380 0.888 1.607 0.900 81 34 38 42 42 67 54 51.143 55
; positions_8nt_m3 versus 5750_SHOX2_DBD_HumanTF_1.0__rc; m=55/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=51.1429; ----yTAATTrr---- ; cor=0.756; Ncor=0.504; logoDP=2.496; NIcor=0.380; NsEucl=0.888; SSD=1.607; NSW=0.900; rcor=81; rNcor=34; rlogoDP=38; rNIcor=42; rNsEucl=42; rSSD=67; rNSW=54; rank_mean=51.143; match_rank=55 a 0 0 0 0 749 415 6251 6251 30 323 3041 1652 0 0 0 0 c 0 0 0 0 2277 17 225 5 29 104 143 1142 0 0 0 0 g 0 0 0 0 903 131 109 11 87 318 3209 2536 0 0 0 0 t 0 0 0 0 2323 6251 255 67 6251 6251 407 921 0 0 0 0

5480_ISX_full_HumanTF_1.0__rc_shift4 (5480_ISX_full_HumanTF_1.0__rc) 0.760 0.507 3.179 0.385 0.884 1.725 0.892 73 28 24 33 52 79 69 51.143 56
; positions_8nt_m3 versus 5480_ISX_full_HumanTF_1.0__rc; m=56/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=51.1429; ----yTAATTrr---- ; cor=0.760; Ncor=0.507; logoDP=3.179; NIcor=0.385; NsEucl=0.884; SSD=1.725; NSW=0.892; rcor=73; rNcor=28; rlogoDP=24; rNIcor=33; rNsEucl=52; rSSD=79; rNSW=69; rank_mean=51.143; match_rank=56 a 0 0 0 0 283 49 2065 2065 10 24 1061 520 0 0 0 0 c 0 0 0 0 704 0 24 0 0 5 0 364 0 0 0 0 g 0 0 0 0 307 0 0 0 16 48 1003 863 0 0 0 0 t 0 0 0 0 770 2065 0 0 2065 2065 10 318 0 0 0 0

5640_PDX1_DBD_2_HumanTF_1.0__rc_shift4 (5640_PDX1_DBD_2_HumanTF_1.0__rc) 0.751 0.501 2.778 0.394 0.885 1.682 0.895 84 36 27 30 48 72 64 51.571 57
; positions_8nt_m3 versus 5640_PDX1_DBD_2_HumanTF_1.0__rc; m=57/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=51.5714; ----yTAATkrs---- ; cor=0.751; Ncor=0.501; logoDP=2.778; NIcor=0.394; NsEucl=0.885; SSD=1.682; NSW=0.895; rcor=84; rNcor=36; rlogoDP=27; rNIcor=30; rNsEucl=48; rSSD=72; rNSW=64; rank_mean=51.571; match_rank=57 a 0 0 0 0 852 0 7130 7130 0 78 4661 999 0 0 0 0 c 0 0 0 0 2881 0 0 0 0 185 0 2441 0 0 0 0 g 0 0 0 0 1216 0 0 0 45 2291 2469 2206 0 0 0 0 t 0 0 0 0 2181 7130 0 0 7130 4839 292 1483 0 0 0 0

1753_MA0194.1_JASPAR_CORE_2009__rc_shift5 (1753_MA0194.1_JASPAR_CORE_2009__rc) 0.836 0.488 2.968 0.227 0.873 1.583 0.887 23 42 25 56 77 63 76 51.714 58
; positions_8nt_m3 versus 1753_MA0194.1_JASPAR_CORE_2009__rc; m=58/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=51.7143; -----TAATTAA---- ; cor=0.836; Ncor=0.488; logoDP=2.968; NIcor=0.227; NsEucl=0.873; SSD=1.583; NSW=0.887; rcor=23; rNcor=42; rlogoDP=25; rNIcor=56; rNsEucl=77; rSSD=63; rNSW=76; rank_mean=51.714; match_rank=58 a 0 0 0 0 0 0 18 18 0 0 18 16 0 0 0 0 c 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 t 0 0 0 0 0 17 0 0 18 18 0 0 0 0 0 0

6133_1io4_C_3D-footprint_20130124__rc_shift0 (6133_1io4_C_3D-footprint_20130124__rc) 0.845 0.422 0.126 -0.094 0.884 0.967 0.919 21 82 86 85 51 16 26 52.429 59
; positions_8nt_m3 versus 6133_1io4_C_3D-footprint_20130124__rc; m=59/86; ncol2=6; w=6; offset=0; strand=R; shift=0; score=52.4286; tGTGGt---------- ; cor=0.845; Ncor=0.422; logoDP=0.126; NIcor=-0.094; NsEucl=0.884; SSD=0.967; NSW=0.919; rcor=21; rNcor=82; rlogoDP=86; rNIcor=85; rNsEucl=51; rSSD=16; rNSW=26; rank_mean=52.429; match_rank=59 a 16 0 0 0 0 16 0 0 0 0 0 0 0 0 0 0 c 13 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 g 13 96 0 96 96 13 0 0 0 0 0 0 0 0 0 0 t 54 0 96 0 0 54 0 0 0 0 0 0 0 0 0 0

7572_PDX1_do_HOCOMOCO_v9__shift4 (7572_PDX1_do_HOCOMOCO_v9_) 0.757 0.504 4.070 0.483 0.878 1.920 0.880 80 32 18 9 66 86 78 52.714 60
; positions_8nt_m3 versus 7572_PDX1_do_HOCOMOCO_v9_; m=60/86; ncol2=8; w=8; offset=4; strand=D; shift=4; score=52.7143; ----STmATTAG---- ; cor=0.757; Ncor=0.504; logoDP=4.070; NIcor=0.483; NsEucl=0.878; SSD=1.920; NSW=0.880; rcor=80; rNcor=32; rlogoDP=18; rNIcor=9; rNsEucl=66; rSSD=86; rNSW=78; rank_mean=52.714; match_rank=60 a 0 0 0 0 4 1 52 79 0 0 79 12 0 0 0 0 c 0 0 0 0 20 4 21 0 0 0 0 8 0 0 0 0 g 0 0 0 0 54 1 6 0 0 0 0 55 0 0 0 0 t 0 0 0 0 1 73 0 0 79 79 0 4 0 0 0 0

7342_DLX3_do_HOCOMOCO_v9__shift4 (7342_DLX3_do_HOCOMOCO_v9_) 0.757 0.466 4.436 0.469 0.883 1.749 0.891 79 52 15 13 56 83 72 52.857 61
; positions_8nt_m3 versus 7342_DLX3_do_HOCOMOCO_v9_; m=61/86; ncol2=9; w=8; offset=4; strand=D; shift=4; score=52.8571; ----mTAATTrsw--- ; cor=0.757; Ncor=0.466; logoDP=4.436; NIcor=0.469; NsEucl=0.883; SSD=1.749; NSW=0.891; rcor=79; rNcor=52; rlogoDP=15; rNIcor=13; rNsEucl=56; rSSD=83; rNSW=72; rank_mean=52.857; match_rank=61 a 0 0 0 0 14 0 33 34 0 0 18 5 15 0 0 0 c 0 0 0 0 14 1 0 0 0 0 1 18 5 0 0 0 g 0 0 0 0 6 0 1 0 0 2 12 9 4 0 0 0 t 0 0 0 0 0 33 0 0 34 32 3 2 10 0 0 0

5171_BSX_DBD_HumanTF_1.0__rc_shift4 (5171_BSX_DBD_HumanTF_1.0__rc) 0.751 0.501 1.938 0.282 0.890 1.552 0.903 85 37 55 54 38 60 50 54.143 62
; positions_8nt_m3 versus 5171_BSX_DBD_HumanTF_1.0__rc; m=62/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=54.1429; ----bTAATkrs---- ; cor=0.751; Ncor=0.501; logoDP=1.938; NIcor=0.282; NsEucl=0.890; SSD=1.552; NSW=0.903; rcor=85; rNcor=37; rlogoDP=55; rNIcor=54; rNsEucl=38; rSSD=60; rNSW=50; rank_mean=54.143; match_rank=62 a 0 0 0 0 1276 0 8832 8832 66 116 3247 1164 0 0 0 0 c 0 0 0 0 2417 0 0 0 1078 2197 103 2290 0 0 0 0 g 0 0 0 0 2369 0 0 0 194 2483 5585 3929 0 0 0 0 t 0 0 0 0 2770 8832 96 0 8832 4036 688 1449 0 0 0 0

5543_MSX2_DBD_2_HumanTF_1.0__rc_shift4 (5543_MSX2_DBD_2_HumanTF_1.0__rc) 0.758 0.505 2.642 0.326 0.885 1.707 0.893 75 29 33 53 50 75 65 54.286 63
; positions_8nt_m3 versus 5543_MSX2_DBD_2_HumanTF_1.0__rc; m=63/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score=54.2857; ----yTAATTGg---- ; cor=0.758; Ncor=0.505; logoDP=2.642; NIcor=0.326; NsEucl=0.885; SSD=1.707; NSW=0.893; rcor=75; rNcor=29; rlogoDP=33; rNIcor=53; rNsEucl=50; rSSD=75; rNSW=65; rank_mean=54.286; match_rank=63 a 0 0 0 0 518 21 3400 3400 0 84 807 360 0 0 0 0 c 0 0 0 0 892 0 72 0 0 67 44 835 0 0 0 0 g 0 0 0 0 791 61 169 0 28 161 2592 1688 0 0 0 0 t 0 0 0 0 1198 3400 52 0 3400 3400 105 517 0 0 0 0

1815_MA0257.1_JASPAR_CORE_2009__rc_shift5 (1815_MA0257.1_JASPAR_CORE_2009__rc) 0.795 0.464 1.657 0.160 0.883 1.349 0.904 42 57 74 68 57 39 46 54.714 64
; positions_8nt_m3 versus 1815_MA0257.1_JASPAR_CORE_2009__rc; m=64/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=54.7143; -----TmATTAr---- ; cor=0.795; Ncor=0.464; logoDP=1.657; NIcor=0.160; NsEucl=0.883; SSD=1.349; NSW=0.904; rcor=42; rNcor=57; rlogoDP=74; rNIcor=68; rNsEucl=57; rSSD=39; rNSW=46; rank_mean=54.714; match_rank=64 a 0 0 0 0 0 0 16 25 0 0 25 11 0 0 0 0 c 0 0 0 0 0 4 10 0 0 0 0 5 0 0 0 0 g 0 0 0 0 0 0 0 1 0 0 0 7 0 0 0 0 t 0 0 0 0 0 22 0 0 26 26 1 3 0 0 0 0

1750_MA0191.1_JASPAR_CORE_2009__rc_shift5 (1750_MA0191.1_JASPAR_CORE_2009__rc) 0.791 0.462 1.822 0.194 0.880 1.409 0.899 43 59 65 60 60 42 56 55.000 65
; positions_8nt_m3 versus 1750_MA0191.1_JASPAR_CORE_2009__rc; m=65/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score= 55; -----YmATTAa---- ; cor=0.791; Ncor=0.462; logoDP=1.822; NIcor=0.194; NsEucl=0.880; SSD=1.409; NSW=0.899; rcor=43; rNcor=59; rlogoDP=65; rNIcor=60; rNsEucl=60; rSSD=42; rNSW=56; rank_mean=55.000; match_rank=65 a 0 0 0 0 0 0 13 20 0 0 20 11 0 0 0 0 c 0 0 0 0 0 5 6 0 0 0 0 3 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 t 0 0 0 0 0 15 1 0 20 20 0 4 0 0 0 0

1809_MA0251.1_JASPAR_CORE_2009__rc_shift5 (1809_MA0251.1_JASPAR_CORE_2009__rc) 0.798 0.466 1.828 0.156 0.880 1.412 0.899 38 54 64 69 61 43 57 55.143 66
; positions_8nt_m3 versus 1809_MA0251.1_JASPAR_CORE_2009__rc; m=66/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=55.1429; -----yAATTAr---- ; cor=0.798; Ncor=0.466; logoDP=1.828; NIcor=0.156; NsEucl=0.880; SSD=1.412; NSW=0.899; rcor=38; rNcor=54; rlogoDP=64; rNIcor=69; rNsEucl=61; rSSD=43; rNSW=57; rank_mean=55.143; match_rank=66 a 0 0 0 0 0 0 19 21 0 0 20 10 0 0 0 0 c 0 0 0 0 0 7 2 0 0 0 0 4 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 t 0 0 0 0 0 14 0 0 21 21 1 1 0 0 0 0

1788_MA0230.1_JASPAR_CORE_2009__rc_shift5 (1788_MA0230.1_JASPAR_CORE_2009__rc) 0.801 0.467 2.268 0.219 0.875 1.538 0.890 35 51 40 58 72 58 73 55.286 67
; positions_8nt_m3 versus 1788_MA0230.1_JASPAR_CORE_2009__rc; m=67/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=55.2857; -----TmATTAA---- ; cor=0.801; Ncor=0.467; logoDP=2.268; NIcor=0.219; NsEucl=0.875; SSD=1.538; NSW=0.890; rcor=35; rNcor=51; rlogoDP=40; rNIcor=58; rNsEucl=72; rSSD=58; rNSW=73; rank_mean=55.286; match_rank=67 a 0 0 0 0 0 0 10 15 0 0 16 12 0 0 0 0 c 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 t 0 0 0 0 0 16 0 1 16 16 0 1 0 0 0 0

1726_MA0167.1_JASPAR_CORE_2009__rc_shift5 (1726_MA0167.1_JASPAR_CORE_2009__rc) 0.797 0.465 1.604 0.145 0.882 1.356 0.903 40 55 76 73 58 40 49 55.857 68
; positions_8nt_m3 versus 1726_MA0167.1_JASPAR_CORE_2009__rc; m=68/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=55.8571; -----TAATTAr---- ; cor=0.797; Ncor=0.465; logoDP=1.604; NIcor=0.145; NsEucl=0.882; SSD=1.356; NSW=0.903; rcor=40; rNcor=55; rlogoDP=76; rNIcor=73; rNsEucl=58; rSSD=40; rNSW=49; rank_mean=55.857; match_rank=68 a 0 0 0 0 0 2 32 39 0 0 39 21 0 0 0 0 c 0 0 0 0 0 4 8 1 0 7 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 16 0 0 0 0 t 0 0 0 0 0 34 0 0 40 33 1 3 0 0 0 0

5162_BARX1_DBD_2_HumanTF_1.0__rc_shift4 (5162_BARX1_DBD_2_HumanTF_1.0__rc) 0.750 0.500 2.060 0.282 0.888 1.607 0.900 86 38 47 55 43 68 55 56.000 69
; positions_8nt_m3 versus 5162_BARX1_DBD_2_HumanTF_1.0__rc; m=69/86; ncol2=8; w=8; offset=4; strand=R; shift=4; score= 56; ----yTAATkgb---- ; cor=0.750; Ncor=0.500; logoDP=2.060; NIcor=0.282; NsEucl=0.888; SSD=1.607; NSW=0.900; rcor=86; rNcor=38; rlogoDP=47; rNIcor=55; rNsEucl=43; rSSD=68; rNSW=55; rank_mean=56.000; match_rank=69 a 0 0 0 0 1077 0 6805 6805 0 87 1667 877 0 0 0 0 c 0 0 0 0 2420 0 0 0 192 1386 246 2236 0 0 0 0 g 0 0 0 0 1391 0 0 0 207 1992 5138 1821 0 0 0 0 t 0 0 0 0 1917 6805 0 0 6805 3339 590 1872 0 0 0 0

1736_MA0177.1_JASPAR_CORE_2009__rc_shift5 (1736_MA0177.1_JASPAR_CORE_2009__rc) 0.799 0.466 1.804 0.155 0.879 1.437 0.897 37 53 66 70 64 47 62 57.000 70
; positions_8nt_m3 versus 1736_MA0177.1_JASPAR_CORE_2009__rc; m=70/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score= 57; -----TmATTAr---- ; cor=0.799; Ncor=0.466; logoDP=1.804; NIcor=0.155; NsEucl=0.879; SSD=1.437; NSW=0.897; rcor=37; rNcor=53; rlogoDP=66; rNIcor=70; rNsEucl=64; rSSD=47; rNSW=62; rank_mean=57.000; match_rank=70 a 0 0 0 0 0 0 16 25 0 0 25 10 0 0 0 0 c 0 0 0 0 0 2 8 0 0 0 0 1 0 0 0 0 g 0 0 0 0 0 0 1 0 0 0 0 10 0 0 0 0 t 0 0 0 0 0 23 0 0 25 25 0 4 0 0 0 0

1738_MA0179.1_JASPAR_CORE_2009__shift4 (1738_MA0179.1_JASPAR_CORE_2009_) 0.761 0.444 4.700 0.444 0.867 1.723 0.877 72 74 11 20 82 78 82 59.857 71
; positions_8nt_m3 versus 1738_MA0179.1_JASPAR_CORE_2009_; m=71/86; ncol2=7; w=7; offset=4; strand=D; shift=4; score=59.8571; ----yTAATTr----- ; cor=0.761; Ncor=0.444; logoDP=4.700; NIcor=0.444; NsEucl=0.867; SSD=1.723; NSW=0.877; rcor=72; rNcor=74; rlogoDP=11; rNIcor=20; rNsEucl=82; rSSD=78; rNSW=82; rank_mean=59.857; match_rank=71 a 0 0 0 0 2 0 23 23 0 0 12 0 0 0 0 0 c 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 2 0 0 0 0 2 10 0 0 0 0 0 t 0 0 0 0 13 23 0 0 23 21 1 0 0 0 0 0

1765_MA0206.1_JASPAR_CORE_2009__rc_shift5 (1765_MA0206.1_JASPAR_CORE_2009__rc) 0.779 0.454 2.050 0.224 0.876 1.514 0.892 53 67 48 57 70 56 70 60.143 72
; positions_8nt_m3 versus 1765_MA0206.1_JASPAR_CORE_2009__rc; m=72/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=60.1429; -----TmATTAA---- ; cor=0.779; Ncor=0.454; logoDP=2.050; NIcor=0.224; NsEucl=0.876; SSD=1.514; NSW=0.892; rcor=53; rNcor=67; rlogoDP=48; rNIcor=57; rNsEucl=70; rSSD=56; rNSW=70; rank_mean=60.143; match_rank=72 a 0 0 0 0 0 0 12 17 0 2 18 14 0 0 0 0 c 0 0 0 0 0 2 6 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 t 0 0 0 0 0 15 0 1 18 16 0 1 0 0 0 0

1779_MA0220.1_JASPAR_CORE_2009__shift4 (1779_MA0220.1_JASPAR_CORE_2009_) 0.760 0.443 4.696 0.445 0.867 1.731 0.876 74 75 12 18 84 82 84 61.286 73
; positions_8nt_m3 versus 1779_MA0220.1_JASPAR_CORE_2009_; m=73/86; ncol2=7; w=7; offset=4; strand=D; shift=4; score=61.2857; ----yTAATTr----- ; cor=0.760; Ncor=0.443; logoDP=4.696; NIcor=0.445; NsEucl=0.867; SSD=1.731; NSW=0.876; rcor=74; rNcor=75; rlogoDP=12; rNIcor=18; rNsEucl=84; rSSD=82; rNSW=84; rank_mean=61.286; match_rank=73 a 0 0 0 0 2 0 23 23 0 0 13 0 0 0 0 0 c 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 2 0 0 0 0 2 10 0 0 0 0 0 t 0 0 0 0 11 23 0 0 23 21 0 0 0 0 0 0

1799_MA0241.1_JASPAR_CORE_2009__rc_shift5 (1799_MA0241.1_JASPAR_CORE_2009__rc) 0.797 0.465 1.786 0.127 0.876 1.508 0.892 41 56 68 76 69 54 68 61.714 74
; positions_8nt_m3 versus 1799_MA0241.1_JASPAR_CORE_2009__rc; m=74/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=61.7143; -----TAATTAr---- ; cor=0.797; Ncor=0.465; logoDP=1.786; NIcor=0.127; NsEucl=0.876; SSD=1.508; NSW=0.892; rcor=41; rNcor=56; rlogoDP=68; rNIcor=76; rNsEucl=69; rSSD=54; rNSW=68; rank_mean=61.714; match_rank=74 a 0 0 0 0 0 0 20 23 0 0 23 7 0 0 0 0 c 0 0 0 0 0 4 3 0 0 0 0 3 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 12 0 0 0 0 t 0 0 0 0 0 19 0 0 23 23 0 1 0 0 0 0

1768_MA0209.1_JASPAR_CORE_2009__rc_shift5 (1768_MA0209.1_JASPAR_CORE_2009__rc) 0.782 0.456 1.929 0.145 0.876 1.505 0.893 51 66 56 74 68 53 67 62.143 75
; positions_8nt_m3 versus 1768_MA0209.1_JASPAR_CORE_2009__rc; m=75/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=62.1429; -----TMATTAr---- ; cor=0.782; Ncor=0.456; logoDP=1.929; NIcor=0.145; NsEucl=0.876; SSD=1.505; NSW=0.893; rcor=51; rNcor=66; rlogoDP=56; rNIcor=74; rNsEucl=68; rSSD=53; rNSW=67; rank_mean=62.143; match_rank=75 a 0 0 0 0 0 0 13 19 0 0 18 7 0 0 0 0 c 0 0 0 0 0 3 6 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 t 0 0 0 0 0 16 0 0 19 19 1 2 0 0 0 0

1808_MA0250.1_JASPAR_CORE_2009__shift4 (1808_MA0250.1_JASPAR_CORE_2009_) 0.757 0.442 4.781 0.432 0.864 1.810 0.871 78 77 9 23 85 84 85 63.000 76
; positions_8nt_m3 versus 1808_MA0250.1_JASPAR_CORE_2009_; m=76/86; ncol2=7; w=7; offset=4; strand=D; shift=4; score= 63; ----tTAATTr----- ; cor=0.757; Ncor=0.442; logoDP=4.781; NIcor=0.432; NsEucl=0.864; SSD=1.810; NSW=0.871; rcor=78; rNcor=77; rlogoDP=9; rNIcor=23; rNsEucl=85; rSSD=84; rNSW=85; rank_mean=63.000; match_rank=76 a 0 0 0 0 1 0 21 21 0 1 6 0 0 0 0 0 c 0 0 0 0 5 0 0 0 0 0 1 0 0 0 0 0 g 0 0 0 0 2 0 0 0 0 0 14 0 0 0 0 0 t 0 0 0 0 13 21 0 0 21 20 0 0 0 0 0 0

1796_MA0238.1_JASPAR_CORE_2009__rc_shift5 (1796_MA0238.1_JASPAR_CORE_2009__rc) 0.787 0.459 1.927 0.164 0.873 1.575 0.888 47 62 57 66 74 62 75 63.286 77
; positions_8nt_m3 versus 1796_MA0238.1_JASPAR_CORE_2009__rc; m=77/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=63.2857; -----TmATTAr---- ; cor=0.787; Ncor=0.459; logoDP=1.927; NIcor=0.164; NsEucl=0.873; SSD=1.575; NSW=0.888; rcor=47; rNcor=62; rlogoDP=57; rNIcor=66; rNsEucl=74; rSSD=62; rNSW=75; rank_mean=63.286; match_rank=77 a 0 0 0 0 0 0 13 24 0 0 24 11 0 0 0 0 c 0 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 t 0 0 0 0 0 24 0 0 24 24 0 4 0 0 0 0

1748_MA0189.1_JASPAR_CORE_2009__rc_shift5 (1748_MA0189.1_JASPAR_CORE_2009__rc) 0.766 0.447 1.647 0.163 0.880 1.418 0.899 66 73 75 67 62 44 59 63.714 78
; positions_8nt_m3 versus 1748_MA0189.1_JASPAR_CORE_2009__rc; m=78/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=63.7143; -----TmATTAr---- ; cor=0.766; Ncor=0.447; logoDP=1.647; NIcor=0.163; NsEucl=0.880; SSD=1.418; NSW=0.899; rcor=66; rNcor=73; rlogoDP=75; rNIcor=67; rNsEucl=62; rSSD=44; rNSW=59; rank_mean=63.714; match_rank=78 a 0 0 0 0 0 0 22 41 1 0 40 17 0 0 0 0 c 0 0 0 0 0 9 16 1 0 0 0 6 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 15 0 0 0 0 t 0 0 0 0 0 34 5 1 42 43 3 5 0 0 0 0

1740_MA0181.1_JASPAR_CORE_2009__rc_shift5 (1740_MA0181.1_JASPAR_CORE_2009__rc) 0.772 0.450 1.953 0.185 0.874 1.558 0.889 58 69 54 62 73 61 74 64.429 79
; positions_8nt_m3 versus 1740_MA0181.1_JASPAR_CORE_2009__rc; m=79/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=64.4286; -----YAATTAr---- ; cor=0.772; Ncor=0.450; logoDP=1.953; NIcor=0.185; NsEucl=0.874; SSD=1.558; NSW=0.889; rcor=58; rNcor=69; rlogoDP=54; rNIcor=62; rNsEucl=73; rSSD=61; rNSW=74; rank_mean=64.429; match_rank=79 a 0 0 0 0 0 1 17 22 0 0 22 12 0 0 0 0 c 0 0 0 0 0 6 3 0 0 0 0 1 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 t 0 0 0 0 0 15 2 0 22 22 0 1 0 0 0 0

1743_MA0184.1_JASPAR_CORE_2009__rc_shift5 (1743_MA0184.1_JASPAR_CORE_2009__rc) 0.784 0.457 1.466 0.108 0.877 1.494 0.893 50 65 78 77 67 51 66 64.857 80
; positions_8nt_m3 versus 1743_MA0184.1_JASPAR_CORE_2009__rc; m=80/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=64.8571; -----YAATTAr---- ; cor=0.784; Ncor=0.457; logoDP=1.466; NIcor=0.108; NsEucl=0.877; SSD=1.494; NSW=0.893; rcor=50; rNcor=65; rlogoDP=78; rNIcor=77; rNsEucl=67; rSSD=51; rNSW=66; rank_mean=64.857; match_rank=80 a 0 0 0 0 0 0 19 20 0 2 20 6 0 0 0 0 c 0 0 0 0 0 6 1 0 0 0 0 3 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 t 0 0 0 0 0 14 0 0 20 18 0 2 0 0 0 0

1784_MA0226.1_JASPAR_CORE_2009__rc_shift5 (1784_MA0226.1_JASPAR_CORE_2009__rc) 0.772 0.450 1.959 0.183 0.869 1.682 0.880 57 68 52 65 79 73 79 67.571 81
; positions_8nt_m3 versus 1784_MA0226.1_JASPAR_CORE_2009__rc; m=81/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=67.5714; -----yAATTAa---- ; cor=0.772; Ncor=0.450; logoDP=1.959; NIcor=0.183; NsEucl=0.869; SSD=1.682; NSW=0.880; rcor=57; rNcor=68; rlogoDP=52; rNIcor=65; rNsEucl=79; rSSD=73; rNSW=79; rank_mean=67.571; match_rank=81 a 0 0 0 0 0 1 17 17 0 0 17 11 0 0 0 0 c 0 0 0 0 0 7 0 0 0 0 0 2 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 t 0 0 0 0 0 9 0 0 17 17 0 2 0 0 0 0

1756_MA0197.1_JASPAR_CORE_2009__rc_shift5 (1756_MA0197.1_JASPAR_CORE_2009__rc) 0.762 0.410 0.461 -0.100 0.878 1.461 0.896 69 84 84 86 65 49 63 71.429 82
; positions_8nt_m3 versus 1756_MA0197.1_JASPAR_CORE_2009__rc; m=82/86; ncol2=8; w=7; offset=5; strand=R; shift=5; score=71.4286; -----TmATTAwm--- ; cor=0.762; Ncor=0.410; logoDP=0.461; NIcor=-0.100; NsEucl=0.878; SSD=1.461; NSW=0.896; rcor=69; rNcor=84; rlogoDP=84; rNIcor=86; rNsEucl=65; rSSD=49; rNSW=63; rank_mean=71.429; match_rank=82 a 0 0 0 0 0 5 11 22 0 0 21 11 9 0 0 0 c 0 0 0 0 0 1 6 0 0 0 0 0 7 0 0 0 g 0 0 0 0 0 1 3 0 0 0 0 3 4 0 0 0 t 0 0 0 0 0 15 2 0 22 22 1 8 2 0 0 0

1761_MA0202.1_JASPAR_CORE_2009__rc_shift5 (1761_MA0202.1_JASPAR_CORE_2009__rc) 0.769 0.449 1.895 0.131 0.868 1.712 0.878 61 70 59 75 80 76 80 71.571 83
; positions_8nt_m3 versus 1761_MA0202.1_JASPAR_CORE_2009__rc; m=83/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=71.5714; -----yAATTAr---- ; cor=0.769; Ncor=0.449; logoDP=1.895; NIcor=0.131; NsEucl=0.868; SSD=1.712; NSW=0.878; rcor=61; rNcor=70; rlogoDP=59; rNIcor=75; rNsEucl=80; rSSD=76; rNSW=80; rank_mean=71.571; match_rank=83 a 0 0 0 0 0 0 27 27 0 0 27 11 0 0 0 0 c 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 t 0 0 0 0 0 17 0 0 27 27 0 3 0 0 0 0

1786_MA0228.1_JASPAR_CORE_2009__rc_shift5 (1786_MA0228.1_JASPAR_CORE_2009__rc) 0.758 0.442 1.980 0.153 0.868 1.716 0.877 76 76 51 71 81 77 81 73.286 84
; positions_8nt_m3 versus 1786_MA0228.1_JASPAR_CORE_2009__rc; m=84/86; ncol2=7; w=7; offset=5; strand=R; shift=5; score=73.2857; -----TmATTAr---- ; cor=0.758; Ncor=0.442; logoDP=1.980; NIcor=0.153; NsEucl=0.868; SSD=1.716; NSW=0.877; rcor=76; rNcor=76; rlogoDP=51; rNIcor=71; rNsEucl=81; rSSD=77; rNSW=81; rank_mean=73.286; match_rank=84 a 0 0 0 0 0 0 13 20 0 0 21 9 0 0 0 0 c 0 0 0 0 0 2 8 1 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 12 0 0 0 0 t 0 0 0 0 0 19 0 0 21 21 0 0 0 0 0 0

6026_1co0_A_3D-footprint_20130124__rc_shift1 (6026_1co0_A_3D-footprint_20130124__rc) 0.767 0.447 1.667 0.040 0.863 1.835 0.869 65 72 72 82 86 85 86 78.286 85
; positions_8nt_m3 versus 6026_1co0_A_3D-footprint_20130124__rc; m=85/86; ncol2=7; w=7; offset=1; strand=R; shift=1; score=78.2857; -ctGGTAC-------- ; cor=0.767; Ncor=0.447; logoDP=1.667; NIcor=0.040; NsEucl=0.863; SSD=1.835; NSW=0.869; rcor=65; rNcor=72; rlogoDP=72; rNIcor=82; rNsEucl=86; rSSD=85; rNSW=86; rank_mean=78.286; match_rank=85 a 0 13 13 0 0 0 96 0 0 0 0 0 0 0 0 0 c 0 54 13 0 0 0 0 96 0 0 0 0 0 0 0 0 g 0 16 13 96 96 0 0 0 0 0 0 0 0 0 0 0 t 0 13 57 0 0 96 0 0 0 0 0 0 0 0 0 0

1787_MA0229.1_JASPAR_CORE_2009__rc_shift5 (1787_MA0229.1_JASPAR_CORE_2009__rc) 0.772 0.416 0.671 -0.092 0.867 1.730 0.876 56 83 83 84 83 81 83 79.000 86
; positions_8nt_m3 versus 1787_MA0229.1_JASPAR_CORE_2009__rc; m=86/86; ncol2=8; w=7; offset=5; strand=R; shift=5; score= 79; -----YAATTArw--- ; cor=0.772; Ncor=0.416; logoDP=0.671; NIcor=-0.092; NsEucl=0.867; SSD=1.730; NSW=0.876; rcor=56; rNcor=83; rlogoDP=83; rNIcor=84; rNsEucl=83; rSSD=81; rNSW=83; rank_mean=79.000; match_rank=86 a 0 0 0 0 0 0 16 16 0 0 16 6 9 0 0 0 c 0 0 0 0 0 5 0 0 0 0 0 0 3 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 t 0 0 0 0 0 11 0 0 16 16 0 1 4 0 0 0