One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_footprintDB

One-to-n matrix alignment; reference matrix: dyads_m3_shift7 ; 34 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
dyads_m3_shift7 (dyads_m3)
; dyads_m3; m=0 (reference); ncol1=11; shift=7; ncol=21; -------ymGATCAAAtw--- ; Alignment reference a 0 0 0 0 0 0 0 2 6 0 11 0 0 11 11 11 2 4 0 0 0 c 0 0 0 0 0 0 0 3 3 0 0 0 11 0 0 0 2 1 0 0 0 g 0 0 0 0 0 0 0 2 0 11 0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 4 2 0 0 11 0 0 0 0 7 6 0 0 0

2526_MA0151.1_JASPAR_CORE_2009__shift10 (2526_MA0151.1_JASPAR_CORE_2009_) 0.887 0.484 8.694 0.469 0.885 0.960 0.920 5 17 5 9 22 5 7 10.000 1
; dyads_m3 versus 2526_MA0151.1_JASPAR_CORE_2009_; m=1/33; ncol2=6; w=6; offset=3; strand=D; shift=10; score= 10; ----------ATyAAA----- ; cor=0.887; Ncor=0.484; logoDP=8.694; NIcor=0.469; NsEucl=0.885; SSD=0.960; NSW=0.920; rcor=5; rNcor=17; rlogoDP=5; rNIcor=9; rNsEucl=22; rSSD=5; rNSW=7; rank_mean=10.000; match_rank=1 a 0 0 0 0 0 0 0 0 0 0 27 0 1 27 27 20 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 27 17 0 0 6 0 0 0 0 0

1939_PB0082.1_JASPAR_CORE_2009__shift5 (1939_PB0082.1_JASPAR_CORE_2009_) 0.799 0.517 8.434 0.552 0.906 2.134 0.903 16 11 7 6 3 17 10 10.000 2
; dyads_m3 versus 1939_PB0082.1_JASPAR_CORE_2009_; m=2/33; ncol2=17; w=11; offset=-2; strand=D; shift=5; score= 10; -----twwasATCAAAGgrww ; cor=0.799; Ncor=0.517; logoDP=8.434; NIcor=0.552; NsEucl=0.906; SSD=2.134; NSW=0.903; rcor=16; rNcor=11; rlogoDP=7; rNIcor=6; rNsEucl=3; rSSD=17; rNSW=10; rank_mean=10.000; match_rank=2 a 0 0 0 0 0 19 37 25 58 4 76 6 4 96 97 94 13 21 49 40 31 c 0 0 0 0 0 20 23 17 4 40 1 1 87 0 0 0 6 17 13 20 23 g 0 0 0 0 0 18 12 13 13 50 1 0 6 0 1 2 80 48 31 15 16 t 0 0 0 0 0 43 27 45 24 7 23 93 3 3 1 4 2 13 8 25 30

6733_4euw_A_3D-footprint_20130124__shift11 (6733_4euw_A_3D-footprint_20130124_) 0.883 0.481 7.280 0.491 0.890 0.877 0.927 6 18 12 8 20 4 5 10.429 3
; dyads_m3 versus 6733_4euw_A_3D-footprint_20130124_; m=3/33; ncol2=6; w=6; offset=4; strand=D; shift=11; score=10.4286; -----------TcAAAg---- ; cor=0.883; Ncor=0.481; logoDP=7.280; NIcor=0.491; NsEucl=0.890; SSD=0.877; NSW=0.927; rcor=6; rNcor=18; rlogoDP=12; rNIcor=8; rNsEucl=20; rSSD=4; rNSW=5; rank_mean=10.429; match_rank=3 a 0 0 0 0 0 0 0 0 0 0 0 0 12 96 84 96 12 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 60 0 0 0 12 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 12 0 12 0 60 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 96 12 0 0 0 12 0 0 0 0

5048_ZmHOX2a_2__Athamap_20091028__rc_shift7 (5048_ZmHOX2a_2__Athamap_20091028__rc) 0.940 0.598 0.123 -0.161 0.932 0.456 0.967 2 4 31 31 1 2 2 10.429 4
; dyads_m3 versus 5048_ZmHOX2a_2__Athamap_20091028__rc; m=4/33; ncol2=7; w=7; offset=0; strand=R; shift=7; score=10.4286; -------cmGATCa------- ; cor=0.940; Ncor=0.598; logoDP=0.123; NIcor=-0.161; NsEucl=0.932; SSD=0.456; NSW=0.967; rcor=2; rNcor=4; rlogoDP=31; rNIcor=31; rNsEucl=1; rSSD=2; rNSW=2; rank_mean=10.429; match_rank=4 a 0 0 0 0 0 0 0 6 16 0 27 0 0 15 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 14 7 0 0 0 27 5 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 4 4 27 0 0 0 2 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 3 0 0 0 27 0 5 0 0 0 0 0 0 0

2653_MA0434.1_JASPAR_CORE_2009__shift5 (2653_MA0434.1_JASPAR_CORE_2009_) 0.862 0.464 6.479 0.443 0.898 1.014 0.928 9 21 15 10 15 6 4 11.429 5
; dyads_m3 versus 2653_MA0434.1_JASPAR_CORE_2009_; m=5/33; ncol2=9; w=7; offset=-2; strand=D; shift=5; score=11.4286; -----yGymrATCm------- ; cor=0.862; Ncor=0.464; logoDP=6.479; NIcor=0.443; NsEucl=0.898; SSD=1.014; NSW=0.928; rcor=9; rNcor=21; rlogoDP=15; rNIcor=10; rNsEucl=15; rSSD=6; rNSW=4; rank_mean=11.429; match_rank=5 a 0 0 0 0 0 11 0 9 63 40 100 0 0 36 0 0 0 0 0 0 0 c 0 0 0 0 0 36 0 26 26 0 0 0 100 30 0 0 0 0 0 0 0 g 0 0 0 0 0 11 100 0 0 60 0 0 0 17 0 0 0 0 0 0 0 t 0 0 0 0 0 41 0 65 11 0 0 100 0 17 0 0 0 0 0 0 0

1940_PB0083.1_JASPAR_CORE_2009__shift5 (1940_PB0083.1_JASPAR_CORE_2009_) 0.795 0.515 7.733 0.554 0.906 2.161 0.902 18 13 10 4 5 19 12 11.571 6
; dyads_m3 versus 1940_PB0083.1_JASPAR_CORE_2009_; m=6/33; ncol2=17; w=11; offset=-2; strand=D; shift=5; score=11.5714; -----twwasWTCAAAGgrah ; cor=0.795; Ncor=0.515; logoDP=7.733; NIcor=0.554; NsEucl=0.906; SSD=2.161; NSW=0.902; rcor=18; rNcor=13; rlogoDP=10; rNIcor=4; rNsEucl=5; rSSD=19; rNSW=12; rank_mean=11.571; match_rank=6 a 0 0 0 0 0 17 34 30 60 4 73 7 5 96 96 94 16 23 56 49 31 c 0 0 0 0 0 20 23 17 5 38 1 1 82 1 0 1 6 15 12 21 25 g 0 0 0 0 0 22 14 14 13 53 1 0 10 1 2 2 76 52 25 12 13 t 0 0 0 0 0 41 29 38 21 5 26 92 4 3 2 4 2 9 6 17 31

3755_UP00058_UniPROBE_20120919__shift5 (3755_UP00058_UniPROBE_20120919_) 0.796 0.515 8.422 0.550 0.905 2.165 0.902 17 12 8 7 6 20 13 11.857 7
; dyads_m3 versus 3755_UP00058_UniPROBE_20120919_; m=7/33; ncol2=17; w=11; offset=-2; strand=D; shift=5; score=11.8571; -----twwwsATCAAAGgrww ; cor=0.796; Ncor=0.515; logoDP=8.422; NIcor=0.550; NsEucl=0.905; SSD=2.165; NSW=0.902; rcor=17; rNcor=12; rlogoDP=8; rNIcor=7; rNsEucl=6; rSSD=20; rNSW=13; rank_mean=11.857; match_rank=7 a 0 0 0 0 0 19 37 25 58 4 75 0.06 4 0.96 0.97 0.94 12 21 49 40 31 c 0 0 0 0 0 20 23 17 4 40 1 0.01 87 0 0 0 6 17 13 20 23 g 0 0 0 0 0 18 13 13 13 49 1 0 6 0 0.01 0.02 80 49 31 15 16 t 0 0 0 0 0 43 27 45 25 7 23 0.93 3 0.03 0.01 0.04 2 13 7 25 30

7482_LEF1_f1_HOCOMOCO_v9__rc_shift10 (7482_LEF1_f1_HOCOMOCO_v9__rc) 0.917 0.500 2.545 0.028 0.900 0.726 0.939 3 15 26 26 13 3 3 12.714 8
; dyads_m3 versus 7482_LEF1_f1_HOCOMOCO_v9__rc; m=8/33; ncol2=6; w=6; offset=3; strand=R; shift=10; score=12.7143; ----------wwCAAA----- ; cor=0.917; Ncor=0.500; logoDP=2.545; NIcor=0.028; NsEucl=0.900; SSD=0.726; NSW=0.939; rcor=3; rNcor=15; rlogoDP=26; rNIcor=26; rNsEucl=13; rSSD=3; rNSW=3; rank_mean=12.714; match_rank=8 a 0 0 0 0 0 0 0 0 0 0 38 28 0 67 67 65 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 3 0 67 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 2 4 0 0 0 1 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 24 35 0 0 0 1 0 0 0 0 0

3751_UP00054_UniPROBE_20120919__shift5 (3751_UP00054_UniPROBE_20120919_) 0.795 0.514 7.843 0.554 0.905 2.167 0.901 19 14 9 5 7 21 14 12.714 9
; dyads_m3 versus 3751_UP00054_UniPROBE_20120919_; m=9/33; ncol2=17; w=11; offset=-2; strand=D; shift=5; score=12.7143; -----twwasWTCAAAGgrah ; cor=0.795; Ncor=0.514; logoDP=7.843; NIcor=0.554; NsEucl=0.905; SSD=2.167; NSW=0.901; rcor=19; rNcor=14; rlogoDP=9; rNIcor=5; rNsEucl=7; rSSD=21; rNSW=14; rank_mean=12.714; match_rank=9 a 0 0 0 0 0 17 34 30 60 4 72 0.07 4 96 0.96 93 16 23 56 49 31 c 0 0 0 0 0 20 23 17 5 38 1 0.01 82 1 0 1 6 15 13 22 25 g 0 0 0 0 0 22 14 14 14 53 1 0 10 0 0.02 2 76 53 25 12 13 t 0 0 0 0 0 41 29 39 21 5 26 0.92 4 3 0.02 4 2 9 6 17 31

1795_MA0237.1_JASPAR_CORE_2009__rc_shift9 (1795_MA0237.1_JASPAR_CORE_2009__rc) 0.888 0.646 2.118 0.068 0.897 1.360 0.915 4 3 27 24 16 9 9 13.143 10
; dyads_m3 versus 1795_MA0237.1_JASPAR_CORE_2009__rc; m=10/33; ncol2=8; w=8; offset=2; strand=R; shift=9; score=13.1429; ---------kWTCAAAr---- ; cor=0.888; Ncor=0.646; logoDP=2.118; NIcor=0.068; NsEucl=0.897; SSD=1.360; NSW=0.915; rcor=4; rNcor=3; rlogoDP=27; rNIcor=24; rNsEucl=16; rSSD=9; rNSW=9; rank_mean=13.143; match_rank=10 a 0 0 0 0 0 0 0 0 0 4 17 3 3 23 22 20 8 0 0 0 0 c 0 0 0 0 0 0 0 0 0 3 0 5 20 0 1 0 3 0 0 0 0 g 0 0 0 0 0 0 0 0 0 11 0 0 2 0 0 3 10 0 0 0 0 t 0 0 0 0 0 0 0 0 0 7 8 17 0 2 2 2 4 0 0 0 0

2329_CN0166.1_JASPAR_CORE_2009__shift1 (2329_CN0166.1_JASPAR_CORE_2009_) 0.864 0.407 8.500 0.387 0.898 1.323 0.917 7 32 6 18 14 8 8 13.286 11
; dyads_m3 versus 2329_CN0166.1_JASPAR_CORE_2009_; m=11/33; ncol2=14; w=8; offset=-6; strand=D; shift=1; score=13.2857; -CATGCTGAGATCAA------ ; cor=0.864; Ncor=0.407; logoDP=8.500; NIcor=0.387; NsEucl=0.898; SSD=1.323; NSW=0.917; rcor=7; rNcor=32; rlogoDP=6; rNIcor=18; rNsEucl=14; rSSD=8; rNSW=8; rank_mean=13.286; match_rank=11 a 0 2 42 2 2 0 0 0 48 1 41 2 3 49 47 0 0 0 0 0 0 c 0 46 5 0 1 49 0 0 0 0 5 2 40 0 0 0 0 0 0 0 0 g 0 0 0 1 45 0 0 49 1 48 0 2 6 0 0 0 0 0 0 0 0 t 0 1 2 46 1 0 49 0 0 0 3 43 0 0 2 0 0 0 0 0 0

6387_2a07_K_3D-footprint_20130124__rc_shift12 (6387_2a07_K_3D-footprint_20130124__rc) 0.958 0.436 0.093 -0.128 0.925 0.282 0.972 1 25 33 30 2 1 1 13.286 12
; dyads_m3 versus 6387_2a07_K_3D-footprint_20130124__rc; m=12/33; ncol2=5; w=5; offset=5; strand=R; shift=12; score=13.2857; ------------CAAat---- ; cor=0.958; Ncor=0.436; logoDP=0.093; NIcor=-0.128; NsEucl=0.925; SSD=0.282; NSW=0.972; rcor=1; rNcor=25; rlogoDP=33; rNIcor=30; rNsEucl=2; rSSD=1; rNSW=1; rank_mean=13.286; match_rank=12 a 0 0 0 0 0 0 0 0 0 0 0 0 0 96 96 54 13 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 96 0 0 13 16 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 13 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 54 0 0 0 0

3061_FNR_RegulonDB_7.5__shift1 (3061_FNR_RegulonDB_7.5_) 0.863 0.406 6.313 0.409 0.903 1.216 0.924 8 33 16 17 11 7 6 14.000 13
; dyads_m3 versus 3061_FNR_RegulonDB_7.5_; m=13/33; ncol2=14; w=8; offset=-6; strand=D; shift=1; score= 14; -tTGaTywayATCAA------ ; cor=0.863; Ncor=0.406; logoDP=6.313; NIcor=0.409; NsEucl=0.903; SSD=1.216; NSW=0.924; rcor=8; rNcor=33; rlogoDP=16; rNIcor=17; rNsEucl=11; rSSD=7; rNSW=6; rank_mean=14.000; match_rank=13 a 0 17 5 13 47 10 17 28 48 20 66 4 0 80 73 0 0 0 0 0 0 c 0 8 8 10 14 3 28 10 12 23 0 0 72 1 8 0 0 0 0 0 0 g 0 10 6 58 8 13 3 16 11 11 11 0 5 0 0 0 0 0 0 0 0 t 0 48 64 2 14 57 35 29 12 29 6 79 6 2 2 0 0 0 0 0 0

5494_LEF1_DBD_HumanTF_1.0__shift6 (5494_LEF1_DBD_HumanTF_1.0_) 0.777 0.570 11.529 0.608 0.894 2.736 0.876 21 5 1 3 17 29 23 14.143 14
; dyads_m3 versus 5494_LEF1_DBD_HumanTF_1.0_; m=14/33; ncol2=15; w=11; offset=-1; strand=D; shift=6; score=14.1429; ------aAAGATCAAAGgrww ; cor=0.777; Ncor=0.570; logoDP=11.529; NIcor=0.608; NsEucl=0.894; SSD=2.736; NSW=0.876; rcor=21; rNcor=5; rlogoDP=1; rNIcor=3; rNsEucl=17; rSSD=29; rNSW=23; rank_mean=14.143; match_rank=14 a 0 0 0 0 0 0 601 655 697 5 699 9 14 711 709 712 33 197 309 367 366 c 0 0 0 0 0 0 139 26 7 242 0 3 935 0 0 0 24 184 164 63 95 g 0 0 0 0 0 0 215 207 34 1053 4 0 49 0 4 13 1068 851 559 88 77 t 0 0 0 0 0 0 138 63 14 3 15 898 5 4 0 4 0 124 121 372 422

3780_UP00083_UniPROBE_20120919__rc_shift5 (3780_UP00083_UniPROBE_20120919__rc) 0.803 0.520 3.634 0.097 0.906 2.152 0.902 14 9 23 21 4 18 11 14.286 15
; dyads_m3 versus 3780_UP00083_UniPROBE_20120919__rc; m=15/33; ncol2=17; w=11; offset=-2; strand=R; shift=5; score=14.2857; -----tawasATCAAAGgrmh ; cor=0.803; Ncor=0.520; logoDP=3.634; NIcor=0.097; NsEucl=0.906; SSD=2.152; NSW=0.902; rcor=14; rNcor=9; rlogoDP=23; rNIcor=21; rNsEucl=4; rSSD=18; rNSW=11; rank_mean=14.286; match_rank=15 a 0 0 0 0 0 17 39 25 59 4 0.89 0.05 3 0.97 0.98 0.96 7 20 44 35 31 c 0 0 0 0 0 23 24 22 4 35 0 0 93 0 0 0 3 18 15 25 26 g 0 0 0 0 0 24 14 17 15 57 0 0 3 0 0.01 0.02 88 53 33 16 15 t 0 0 0 0 0 36 23 36 22 4 0.11 0.95 1 0.03 0.01 0.02 2 9 8 24 28

5900_Tcf7_DBD_HumanTF_1.0__shift6 (5900_Tcf7_DBD_HumanTF_1.0_) 0.766 0.702 11.009 0.742 0.891 2.849 0.870 24 1 2 1 19 31 27 15.000 16
; dyads_m3 versus 5900_Tcf7_DBD_HumanTF_1.0_; m=16/33; ncol2=12; w=11; offset=-1; strand=D; shift=6; score= 15; ------aAASATCAAAGg--- ; cor=0.766; Ncor=0.702; logoDP=11.009; NIcor=0.742; NsEucl=0.891; SSD=2.849; NSW=0.870; rcor=24; rNcor=1; rlogoDP=2; rNIcor=1; rNsEucl=19; rSSD=31; rNSW=27; rank_mean=15.000; match_rank=16 a 0 0 0 0 0 0 552 791 906 5 912 0 21 919 921 915 32 159 0 0 0 c 0 0 0 0 0 0 68 31 4 277 2 5 1018 0 6 0 0 146 0 0 0 g 0 0 0 0 0 0 117 144 27 744 4 18 28 5 10 0 846 600 0 0 0 t 0 0 0 0 0 0 97 111 31 6 42 874 21 6 3 4 0 89 0 0 0

3764_UP00067_UniPROBE_20120919__rc_shift5 (3764_UP00067_UniPROBE_20120919__rc) 0.805 0.521 3.757 0.094 0.905 2.176 0.901 12 7 22 22 9 23 16 15.857 17
; dyads_m3 versus 3764_UP00067_UniPROBE_20120919__rc; m=17/33; ncol2=17; w=11; offset=-2; strand=R; shift=5; score=15.8571; -----kwwasATCAAAGgrwy ; cor=0.805; Ncor=0.521; logoDP=3.757; NIcor=0.094; NsEucl=0.905; SSD=2.176; NSW=0.901; rcor=12; rNcor=7; rlogoDP=22; rNIcor=22; rNsEucl=9; rSSD=23; rNSW=16; rank_mean=15.857; match_rank=17 a 0 0 0 0 0 19 40 26 62 2 0.92 0.03 2 0.97 0.99 0.97 5 17 38 32 22 c 0 0 0 0 0 22 17 22 6 28 0 0 95 0 0 0 4 14 14 24 30 g 0 0 0 0 0 34 15 17 12 67 0 0 3 0 0.01 0.02 90 62 40 15 15 t 0 0 0 0 0 25 28 35 20 3 0.08 0.97 0 0.02 0.01 0.02 1 7 8 29 33

2684_PB0084.1_JASPAR_CORE_2009__rc_shift5 (2684_PB0084.1_JASPAR_CORE_2009__rc) 0.801 0.518 3.622 0.097 0.905 2.175 0.901 15 10 24 20 8 22 15 16.286 18
; dyads_m3 versus 2684_PB0084.1_JASPAR_CORE_2009__rc; m=18/33; ncol2=17; w=11; offset=-2; strand=R; shift=5; score=16.2857; -----tawasATCAAAGgrmh ; cor=0.801; Ncor=0.518; logoDP=3.622; NIcor=0.097; NsEucl=0.905; SSD=2.175; NSW=0.901; rcor=15; rNcor=10; rlogoDP=24; rNIcor=20; rNsEucl=8; rSSD=22; rNSW=15; rank_mean=16.286; match_rank=18 a 0 0 0 0 0 17 39 25 59 3 89 5 3 97 98 96 7 20 44 35 31 c 0 0 0 0 0 23 23 22 4 35 0 0 93 0 0 0 3 18 15 25 26 g 0 0 0 0 0 24 14 17 14 57 0 0 3 0 1 2 88 53 33 16 16 t 0 0 0 0 0 35 23 36 22 4 11 95 1 3 1 2 1 9 8 24 28

1904_PB0040.1_JASPAR_CORE_2009__rc_shift5 (1904_PB0040.1_JASPAR_CORE_2009__rc) 0.805 0.521 3.773 0.092 0.905 2.177 0.901 13 8 21 23 10 24 17 16.571 19
; dyads_m3 versus 1904_PB0040.1_JASPAR_CORE_2009__rc; m=19/33; ncol2=17; w=11; offset=-2; strand=R; shift=5; score=16.5714; -----kwwasATCAAAGgrwy ; cor=0.805; Ncor=0.521; logoDP=3.773; NIcor=0.092; NsEucl=0.905; SSD=2.177; NSW=0.901; rcor=13; rNcor=8; rlogoDP=21; rNIcor=23; rNsEucl=10; rSSD=24; rNSW=17; rank_mean=16.571; match_rank=19 a 0 0 0 0 0 19 40 27 62 2 92 3 2 97 99 97 5 17 38 32 22 c 0 0 0 0 0 22 17 22 6 28 0 0 95 0 0 0 4 14 14 24 30 g 0 0 0 0 0 34 15 17 12 68 0 0 3 0 1 2 91 62 40 15 15 t 0 0 0 0 0 25 28 35 20 3 8 97 1 2 1 2 1 7 7 29 33

5863_TCF7L1_full_HumanTF_1.0__shift6 (5863_TCF7L1_full_HumanTF_1.0_) 0.750 0.688 10.294 0.720 0.888 3.015 0.863 33 2 3 2 21 33 28 17.429 20
; dyads_m3 versus 5863_TCF7L1_full_HumanTF_1.0_; m=20/33; ncol2=12; w=11; offset=-1; strand=D; shift=6; score=17.4286; ------AAAGATCAAAGG--- ; cor=0.750; Ncor=0.688; logoDP=10.294; NIcor=0.720; NsEucl=0.888; SSD=3.015; NSW=0.863; rcor=33; rNcor=2; rlogoDP=3; rNIcor=2; rNsEucl=21; rSSD=33; rNSW=28; rank_mean=17.429; match_rank=20 a 0 0 0 0 0 0 109 159 159 0 159 0 5 159 159 159 0 28 0 0 0 c 0 0 0 0 0 0 20 7 0 33 9 6 159 2 0 0 9 9 0 0 0 g 0 0 0 0 0 0 6 30 0 126 13 9 0 1 0 2 159 113 0 0 0 t 0 0 0 0 0 0 24 7 5 6 18 159 0 0 0 0 5 9 0 0 0

6753_6gat_A_3D-footprint_20130124__shift8 (6753_6gat_A_3D-footprint_20130124_) 0.805 0.439 4.748 0.415 0.862 1.377 0.885 11 24 18 16 29 10 20 18.286 21
; dyads_m3 versus 6753_6gat_A_3D-footprint_20130124_; m=21/33; ncol2=6; w=6; offset=1; strand=D; shift=8; score=18.2857; --------CnATCA------- ; cor=0.805; Ncor=0.439; logoDP=4.748; NIcor=0.415; NsEucl=0.862; SSD=1.377; NSW=0.885; rcor=11; rNcor=24; rlogoDP=18; rNIcor=16; rNsEucl=29; rSSD=10; rNSW=20; rank_mean=18.286; match_rank=21 a 0 0 0 0 0 0 0 0 11 24 67 9 0 96 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 67 24 9 11 96 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 9 24 11 9 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 9 24 9 67 0 0 0 0 0 0 0 0 0

7299_ARI3A_do_HOCOMOCO_v9__shift0 (7299_ARI3A_do_HOCOMOCO_v9_) 0.781 0.409 4.796 0.423 0.902 2.309 0.895 20 31 17 14 12 25 18 19.571 22
; dyads_m3 versus 7299_ARI3A_do_HOCOMOCO_v9_; m=22/33; ncol2=21; w=11; offset=-7; strand=D; shift=0; score=19.5714; ATTAAwyrrwATcWAAwtwww ; cor=0.781; Ncor=0.409; logoDP=4.796; NIcor=0.423; NsEucl=0.902; SSD=2.309; NSW=0.895; rcor=20; rNcor=31; rlogoDP=17; rNIcor=14; rNsEucl=12; rSSD=25; rNSW=18; rank_mean=19.571; match_rank=22 a 30 5 7 42 41 21 0 13 22 20 32 6 7 32 33 42 18 5 23 27 29 c 4 0 0 2 3 0 18 8 2 2 0 2 25 0 2 0 0 6 6 3 1 g 0 0 0 0 0 1 10 19 16 7 4 4 2 0 0 0 2 4 1 0 3 t 10 39 37 0 0 22 16 4 4 15 8 32 10 12 9 2 24 29 14 14 11

7300_ARI3A_f1_HOCOMOCO_v9__shift10 (7300_ARI3A_f1_HOCOMOCO_v9_) 0.764 0.417 8.757 0.415 0.831 2.058 0.829 26 28 4 15 33 15 33 22.000 23
; dyads_m3 versus 7300_ARI3A_f1_HOCOMOCO_v9_; m=23/33; ncol2=6; w=6; offset=3; strand=D; shift=10; score= 22; ----------ATTAAA----- ; cor=0.764; Ncor=0.417; logoDP=8.757; NIcor=0.415; NsEucl=0.831; SSD=2.058; NSW=0.829; rcor=26; rNcor=28; rlogoDP=4; rNIcor=15; rNsEucl=33; rSSD=15; rNSW=33; rank_mean=22.000; match_rank=23 a 0 0 0 0 0 0 0 0 0 0 47 0 0 47 47 39 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 47 47 0 0 8 0 0 0 0 0

3893_UP00198_UniPROBE_20120919__shift2 (3893_UP00198_UniPROBE_20120919_) 0.758 0.426 6.826 0.431 0.881 2.313 0.871 30 26 13 12 23 26 25 22.143 24
; dyads_m3 versus 3893_UP00198_UniPROBE_20120919_; m=24/33; ncol2=14; w=9; offset=-5; strand=D; shift=2; score=22.1429; --rTGATssmATCAaw----- ; cor=0.758; Ncor=0.426; logoDP=6.826; NIcor=0.431; NsEucl=0.881; SSD=2.313; NSW=0.871; rcor=30; rNcor=26; rlogoDP=13; rNIcor=12; rNsEucl=23; rSSD=26; rNSW=25; rank_mean=22.143; match_rank=24 a 0 0 34 0.03 4 98 0.04 10 22 54 95 0.01 0 95 61 36 0 0 0 0 0 c 0 0 18 0 2 1 0 37 28 34 3 0.01 0.97 1 14 21 0 0 0 0 0 g 0 0 26 0 93 1 0.06 29 35 8 1 0 0 1 15 10 0 0 0 0 0 t 0 0 22 0.96 1 0 0.90 24 15 4 1 0.99 0.02 3 10 33 0 0 0 0 0

2872_PH0014.1_JASPAR_CORE_2009__shift2 (2872_PH0014.1_JASPAR_CORE_2009_) 0.758 0.426 6.826 0.431 0.881 2.313 0.871 30 26 13 12 23 26 25 22.143 25
; dyads_m3 versus 2872_PH0014.1_JASPAR_CORE_2009_; m=25/33; ncol2=14; w=9; offset=-5; strand=D; shift=2; score=22.1429; --rTGATssmATCAaw----- ; cor=0.758; Ncor=0.426; logoDP=6.826; NIcor=0.431; NsEucl=0.881; SSD=2.313; NSW=0.871; rcor=30; rNcor=26; rlogoDP=13; rNIcor=12; rNsEucl=23; rSSD=26; rNSW=25; rank_mean=22.143; match_rank=25 a 0 0 34 3 4 98 4 10 22 54 95 1 0 95 61 36 0 0 0 0 0 c 0 0 18 0 2 1 0 37 28 34 3 1 97 1 14 21 0 0 0 0 0 g 0 0 26 0 93 1 6 29 35 8 1 0 0 1 15 10 0 0 0 0 0 t 0 0 22 96 1 1 90 24 15 4 1 99 2 3 10 33 0 0 0 0 0

7604_RARG_f1_HOCOMOCO_v9__shift8 (7604_RARG_f1_HOCOMOCO_v9_) 0.759 0.414 7.379 0.439 0.841 1.822 0.848 29 30 11 11 32 14 31 22.571 26
; dyads_m3 versus 7604_RARG_f1_HOCOMOCO_v9_; m=26/33; ncol2=6; w=6; offset=1; strand=D; shift=8; score=22.5714; --------AGKTCA------- ; cor=0.759; Ncor=0.414; logoDP=7.379; NIcor=0.439; NsEucl=0.841; SSD=1.822; NSW=0.848; rcor=29; rNcor=30; rlogoDP=11; rNIcor=11; rNsEucl=32; rSSD=14; rNSW=31; rank_mean=22.571; match_rank=26 a 0 0 0 0 0 0 0 0 23 0 0 0 0 27 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 29 2 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 6 29 21 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 8 29 0 0 0 0 0 0 0 0 0

2255_CN0092.1_JASPAR_CORE_2009__rc_shift2 (2255_CN0092.1_JASPAR_CORE_2009__rc) 0.761 0.465 4.160 0.101 0.894 2.744 0.875 28 20 20 19 18 30 24 22.714 27
; dyads_m3 versus 2255_CN0092.1_JASPAR_CORE_2009__rc; m=27/33; ncol2=18; w=11; offset=-5; strand=R; shift=2; score=22.7143; --TCTGcCAAATCAAATTAG- ; cor=0.761; Ncor=0.465; logoDP=4.160; NIcor=0.101; NsEucl=0.894; SSD=2.744; NSW=0.875; rcor=28; rNcor=20; rlogoDP=20; rNIcor=19; rNsEucl=18; rSSD=30; rNSW=24; rank_mean=22.714; match_rank=27 a 0 0 1 5 7 0 11 6 56 53 61 9 1 58 52 60 1 3 64 7 0 c 0 0 0 53 0 3 39 57 1 4 0 0 59 5 5 1 1 9 0 1 0 g 0 0 7 2 0 62 6 1 0 4 3 6 0 0 5 1 0 4 0 55 0 t 0 0 57 5 58 0 9 1 8 4 1 50 5 2 3 3 63 49 1 2 0

2760_PF0073.1_JASPAR_CORE_2009__rc_shift11 (2760_PF0073.1_JASPAR_CORE_2009__rc) 0.828 0.452 0.121 -0.177 0.857 1.471 0.877 10 23 32 32 30 11 22 22.857 28
; dyads_m3 versus 2760_PF0073.1_JASPAR_CORE_2009__rc; m=28/33; ncol2=6; w=6; offset=4; strand=R; shift=11; score=22.8571; -----------TCAAAG---- ; cor=0.828; Ncor=0.452; logoDP=0.121; NIcor=-0.177; NsEucl=0.857; SSD=1.471; NSW=0.877; rcor=10; rNcor=23; rlogoDP=32; rNIcor=32; rNsEucl=30; rSSD=11; rNSW=22; rank_mean=22.857; match_rank=28 a 0 0 0 0 0 0 0 0 0 0 0 0 0 4260 4260 4260 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 4260 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4260 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 4260 0 0 0 0 0 0 0 0 0

2619_MA0389.1_JASPAR_CORE_2009__rc_shift6 (2619_MA0389.1_JASPAR_CORE_2009__rc) 0.776 0.452 1.017 0.016 0.871 1.621 0.884 22 22 28 27 27 13 21 22.857 29
; dyads_m3 versus 2619_MA0389.1_JASPAR_CORE_2009__rc; m=29/33; ncol2=8; w=7; offset=-1; strand=R; shift=6; score=22.8571; ------gkAGATCt------- ; cor=0.776; Ncor=0.452; logoDP=1.017; NIcor=0.016; NsEucl=0.871; SSD=1.621; NSW=0.884; rcor=22; rNcor=22; rlogoDP=28; rNIcor=27; rNsEucl=27; rSSD=13; rNSW=21; rank_mean=22.857; match_rank=29 a 0 0 0 0 0 0 16 11 74 0 85 3 2 6 0 0 0 0 0 0 0 c 0 0 0 0 0 0 18 13 3 0 2 0 90 19 0 0 0 0 0 0 0 g 0 0 0 0 0 0 42 30 19 99 0 0 2 9 0 0 0 0 0 0 0 t 0 0 0 0 0 0 24 46 4 0 13 97 6 66 0 0 0 0 0 0 0

2559_MA0301.1_JASPAR_CORE_2009__rc_shift5 (2559_MA0301.1_JASPAR_CORE_2009__rc) 0.773 0.416 0.195 -0.115 0.872 1.606 0.885 23 29 30 29 26 12 19 24.000 30
; dyads_m3 versus 2559_MA0301.1_JASPAR_CORE_2009__rc; m=30/33; ncol2=9; w=7; offset=-2; strand=R; shift=5; score= 24; -----kktrGATCt------- ; cor=0.773; Ncor=0.416; logoDP=0.195; NIcor=-0.115; NsEucl=0.872; SSD=1.606; NSW=0.885; rcor=23; rNcor=29; rlogoDP=30; rNIcor=29; rNsEucl=26; rSSD=12; rNSW=19; rank_mean=24.000; match_rank=30 a 0 0 0 0 0 21 17 12 63 2 87 8 1 6 0 0 0 0 0 0 0 c 0 0 0 0 0 21 21 18 4 1 1 0 88 20 0 0 0 0 0 0 0 g 0 0 0 0 0 25 33 19 27 94 0 0 2 9 0 0 0 0 0 0 0 t 0 0 0 0 0 32 28 51 6 3 12 92 8 65 0 0 0 0 0 0 0

1838_MA0326.1_JASPAR_CORE_2009__rc_shift8 (1838_MA0326.1_JASPAR_CORE_2009__rc) 0.764 0.555 2.550 -0.043 0.862 2.447 0.847 27 6 25 28 28 28 32 24.857 31
; dyads_m3 versus 1838_MA0326.1_JASPAR_CORE_2009__rc; m=31/33; ncol2=8; w=8; offset=1; strand=R; shift=8; score=24.8571; --------yGAGCAAA----- ; cor=0.764; Ncor=0.555; logoDP=2.550; NIcor=-0.043; NsEucl=0.862; SSD=2.447; NSW=0.847; rcor=27; rNcor=6; rlogoDP=25; rNIcor=28; rNsEucl=28; rSSD=28; rNSW=32; rank_mean=24.857; match_rank=31 a 0 0 0 0 0 0 0 0 113 0 1714 0 0 1714 1451 1632 0 0 0 0 0 c 0 0 0 0 0 0 0 0 655 0 0 0 1599 0 219 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 1714 0 1714 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 958 0 0 0 115 0 89 108 0 0 0 0 0

1793_MA0235.1_JASPAR_CORE_2009__rc_shift8 (1793_MA0235.1_JASPAR_CORE_2009__rc) 0.764 0.486 0.204 -0.181 0.853 2.106 0.850 25 16 29 33 31 16 30 25.714 32
; dyads_m3 versus 1793_MA0235.1_JASPAR_CORE_2009__rc; m=32/33; ncol2=7; w=7; offset=1; strand=R; shift=8; score=25.7143; --------hAATCAA------ ; cor=0.764; Ncor=0.486; logoDP=0.204; NIcor=-0.181; NsEucl=0.853; SSD=2.106; NSW=0.850; rcor=25; rNcor=16; rlogoDP=29; rNIcor=33; rNsEucl=31; rSSD=16; rNSW=30; rank_mean=25.714; match_rank=32 a 0 0 0 0 0 0 0 0 6 15 15 0 0 15 12 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 4 0 0 0 15 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 5 0 0 15 0 0 1 0 0 0 0 0 0

2350_CN0187.1_JASPAR_CORE_2009__rc_shift2 (2350_CN0187.1_JASPAR_CORE_2009__rc) 0.755 0.472 4.329 0.067 0.879 2.929 0.854 32 19 19 25 25 32 29 25.857 33
; dyads_m3 versus 2350_CN0187.1_JASPAR_CORE_2009__rc; m=33/33; ncol2=15; w=10; offset=-5; strand=R; shift=2; score=25.8571; --AATGAAAGAwCAAAG---- ; cor=0.755; Ncor=0.472; logoDP=4.329; NIcor=0.067; NsEucl=0.879; SSD=2.929; NSW=0.854; rcor=32; rNcor=19; rlogoDP=19; rNIcor=25; rNsEucl=25; rSSD=32; rNSW=29; rank_mean=25.857; match_rank=33 a 0 0 47 48 0 4 40 47 47 0 44 18 0 48 46 47 0 0 0 0 0 c 0 0 0 0 0 3 2 0 0 1 0 0 41 0 2 0 1 0 0 0 0 g 0 0 1 0 0 41 5 1 0 46 1 1 2 0 0 1 47 0 0 0 0 t 0 0 0 0 48 0 1 0 1 1 3 29 5 0 0 0 0 0 0 0 0