One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/oligos_6nt_mkv2/peak-motifs_oligos_6nt_mkv2.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/oligos_6nt_mkv2/peak-motifs_oligos_6nt_mkv2_vs_db_footprintDB

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_shift8 ; 36 matrices ; sort_field=rank_mean

Matrix nameAligned logoscor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_6nt_mkv2_shift8 (oligos_6nt_mkv2)                                
; oligos_6nt_mkv2; m=0 (reference); ncol1=11; shift=8; ncol=19; --------taGATCAATrw
; Alignment reference
a	0	0	0	0	0	0	0	0	1	2	0	5	0	0	5	5	0	3	2
c	0	0	0	0	0	0	0	0	1	1	0	0	0	5	0	0	0	0	0
g	0	0	0	0	0	0	0	0	1	1	5	0	0	0	0	0	0	2	1
t	0	0	0	0	0	0	0	0	2	1	0	0	5	0	0	0	5	0	2
7424_HBP1_f1_HOCOMOCO_v9__shift13 (7424_HBP1_f1_HOCOMOCO_v9_) 0.939 0.433 6.895 0.434 0.925 0.400 0.967 1 20 19 13 2 1 1 8.143 1
; oligos_6nt_mkv2 versus 7424_HBP1_f1_HOCOMOCO_v9_; m=1/35; ncol2=8; w=6; offset=5; strand=D; shift=13; score= 8.1429; -------------CAATgr
; cor=0.939; Ncor=0.433; logoDP=6.895; NIcor=0.434; NsEucl=0.925; SSD=0.400; NSW=0.967; rcor=1; rNcor=20; rlogoDP=19; rNIcor=13; rNsEucl=2; rSSD=1; rNSW=1; rank_mean=8.143; match_rank=1
a	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	5	0	1	2
c	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	1	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	2
t	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	1
6530_3a01_E_3D-footprint_20130124__shift13 (6530_3a01_E_3D-footprint_20130124_) 0.896 0.489 7.801 0.504 0.901 0.712 0.941 6 13 11 10 15 3 6 9.143 2
; oligos_6nt_mkv2 versus 6530_3a01_E_3D-footprint_20130124_; m=2/35; ncol2=6; w=6; offset=5; strand=D; shift=13; score= 9.1429; -------------CAATtA
; cor=0.896; Ncor=0.489; logoDP=7.801; NIcor=0.504; NsEucl=0.901; SSD=0.712; NSW=0.941; rcor=6; rNcor=13; rlogoDP=11; rNIcor=10; rNsEucl=15; rSSD=3; rNSW=6; rank_mean=9.143; match_rank=2
a	0	0	0	0	0	0	0	0	0	0	0	0	0	0	96	96	0	20	77
c	0	0	0	0	0	0	0	0	0	0	0	0	0	96	0	0	0	19	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	19
t	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	96	38	0
5763_SOX15_full_2_HumanTF_1.0__shift11 (5763_SOX15_full_2_HumanTF_1.0_) 0.925 0.411 10.378 0.414 0.924 0.730 0.954 3 29 2 21 3 4 3 9.286 3
; oligos_6nt_mkv2 versus 5763_SOX15_full_2_HumanTF_1.0_; m=3/35; ncol2=15; w=8; offset=3; strand=D; shift=11; score= 9.2857; -----------ATCAATAm
; cor=0.925; Ncor=0.411; logoDP=10.378; NIcor=0.414; NsEucl=0.924; SSD=0.730; NSW=0.954; rcor=3; rNcor=29; rlogoDP=2; rNIcor=21; rNsEucl=3; rSSD=4; rNSW=3; rank_mean=9.286; match_rank=3
a	0	0	0	0	0	0	0	0	0	0	0	88	0	0	88	88	0	88	88
c	0	0	0	0	0	0	0	0	0	0	0	28	3	88	0	3	0	0	37
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
t	0	0	0	0	0	0	0	0	0	0	0	3	88	0	0	0	88	5	6
2784_PF0097.1_JASPAR_CORE_2009__rc_shift10 (2784_PF0097.1_JASPAR_CORE_2009__rc) 0.916 0.666 7.697 0.346 0.917 0.885 0.945 5 4 14 28 5 6 5 9.571 4
; oligos_6nt_mkv2 versus 2784_PF0097.1_JASPAR_CORE_2009__rc; m=4/35; ncol2=8; w=8; offset=2; strand=R; shift=10; score= 9.5714; ----------GATrAATr-
; cor=0.916; Ncor=0.666; logoDP=7.697; NIcor=0.346; NsEucl=0.917; SSD=0.885; NSW=0.945; rcor=5; rNcor=4; rlogoDP=14; rNIcor=28; rNsEucl=5; rSSD=6; rNSW=5; rank_mean=9.571; match_rank=4
a	0	0	0	0	0	0	0	0	0	0	0	992	0	360	992	992	0	533	0
c	0	0	0	0	0	0	0	0	0	0	0	0	0	195	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	992	0	0	259	0	0	0	459	0
t	0	0	0	0	0	0	0	0	0	0	0	0	992	178	0	0	992	0	0
5766_SOX18_full_2_HumanTF_1.0__shift11 (5766_SOX18_full_2_HumanTF_1.0_) 0.921 0.410 10.470 0.424 0.924 0.743 0.954 4 32 1 17 4 5 4 9.571 5
; oligos_6nt_mkv2 versus 5766_SOX18_full_2_HumanTF_1.0_; m=5/35; ncol2=15; w=8; offset=3; strand=D; shift=11; score= 9.5714; -----------ATCAATwk
; cor=0.921; Ncor=0.410; logoDP=10.470; NIcor=0.424; NsEucl=0.924; SSD=0.743; NSW=0.954; rcor=4; rNcor=32; rlogoDP=1; rNIcor=17; rNsEucl=4; rSSD=5; rNSW=4; rank_mean=9.571; match_rank=5
a	0	0	0	0	0	0	0	0	0	0	0	298	8	0	298	298	0	96	51
c	0	0	0	0	0	0	0	0	0	0	0	14	0	298	0	0	0	7	36
g	0	0	0	0	0	0	0	0	0	0	0	31	0	0	0	0	0	15	132
t	0	0	0	0	0	0	0	0	0	0	0	6	298	0	0	0	298	180	78
5774_SOX2_DBD_3_HumanTF_1.0__shift10 (5774_SOX2_DBD_3_HumanTF_1.0_) 0.886 0.420 10.258 0.408 0.913 1.212 0.933 7 23 3 22 6 9 7 11.000 6
; oligos_6nt_mkv2 versus 5774_SOX2_DBD_3_HumanTF_1.0_; m=6/35; ncol2=17; w=9; offset=2; strand=D; shift=10; score=     11; ----------rATCAATGk
; cor=0.886; Ncor=0.420; logoDP=10.258; NIcor=0.408; NsEucl=0.913; SSD=1.212; NSW=0.933; rcor=7; rNcor=23; rlogoDP=3; rNIcor=22; rNsEucl=6; rSSD=9; rNSW=7; rank_mean=11.000; match_rank=6
a	0	0	0	0	0	0	0	0	0	0	105	352	7	0	352	352	0	19	49
c	0	0	0	0	0	0	0	0	0	0	62	17	2	352	0	0	0	0	55
g	0	0	0	0	0	0	0	0	0	0	131	56	7	0	0	0	0	296	115
t	0	0	0	0	0	0	0	0	0	0	54	17	352	0	0	0	352	38	132
1999_PB0144.1_JASPAR_CORE_2009__shift7 (1999_PB0144.1_JASPAR_CORE_2009_) 0.818 0.562 7.711 0.585 0.911 1.897 0.914 15 6 13 4 8 20 12 11.143 7
; oligos_6nt_mkv2 versus 1999_PB0144.1_JASPAR_CORE_2009_; m=7/35; ncol2=16; w=11; offset=-1; strand=D; shift=7; score=11.1429; -------swrsATCAATCr
; cor=0.818; Ncor=0.562; logoDP=7.711; NIcor=0.585; NsEucl=0.911; SSD=1.897; NSW=0.914; rcor=15; rNcor=6; rlogoDP=13; rNIcor=4; rNsEucl=8; rSSD=20; rNSW=12; rank_mean=11.143; match_rank=7
a	0	0	0	0	0	0	0	23	44	42	17	81	4	2	94	93	3	11	68
c	0	0	0	0	0	0	0	27	8	14	34	2	1	90	1	1	2	71	2
g	0	0	0	0	0	0	0	39	23	32	39	1	1	4	1	4	5	1	28
t	0	0	0	0	0	0	0	11	25	12	10	16	94	4	4	2	91	17	3
5829_Sox3_DBD_2_HumanTF_1.0__shift10 (5829_Sox3_DBD_2_HumanTF_1.0_) 0.884 0.419 10.178 0.419 0.913 1.236 0.931 8 24 4 18 7 10 8 11.286 8
; oligos_6nt_mkv2 versus 5829_Sox3_DBD_2_HumanTF_1.0_; m=8/35; ncol2=17; w=9; offset=2; strand=D; shift=10; score=11.2857; ----------sATCAATGt
; cor=0.884; Ncor=0.419; logoDP=10.178; NIcor=0.419; NsEucl=0.913; SSD=1.236; NSW=0.931; rcor=8; rNcor=24; rlogoDP=4; rNIcor=18; rNsEucl=7; rSSD=10; rNSW=8; rank_mean=11.286; match_rank=8
a	0	0	0	0	0	0	0	0	0	0	113	1477	54	0	1477	1477	0	0	103
c	0	0	0	0	0	0	0	0	0	0	459	96	1	1477	0	0	1	0	226
g	0	0	0	0	0	0	0	0	0	0	623	197	7	2	1	1	0	1116	352
t	0	0	0	0	0	0	0	0	0	0	282	98	1477	10	0	0	1477	361	796
5048_ZmHOX2a_2__Athamap_20091028__rc_shift8 (5048_ZmHOX2a_2__Athamap_20091028__rc) 0.926 0.589 0.139 -0.157 0.926 0.543 0.961 2 5 34 33 1 2 2 11.286 9
; oligos_6nt_mkv2 versus 5048_ZmHOX2a_2__Athamap_20091028__rc; m=9/35; ncol2=7; w=7; offset=0; strand=R; shift=8; score=11.2857; --------cmGATCa----
; cor=0.926; Ncor=0.589; logoDP=0.139; NIcor=-0.157; NsEucl=0.926; SSD=0.543; NSW=0.961; rcor=2; rNcor=5; rlogoDP=34; rNIcor=33; rNsEucl=1; rSSD=2; rNSW=2; rank_mean=11.286; match_rank=9
a	0	0	0	0	0	0	0	0	6	16	0	27	0	0	15	0	0	0	0
c	0	0	0	0	0	0	0	0	14	7	0	0	0	27	5	0	0	0	0
g	0	0	0	0	0	0	0	0	4	4	27	0	0	0	2	0	0	0	0
t	0	0	0	0	0	0	0	0	3	0	0	0	27	0	5	0	0	0	0
2042_PB0188.1_JASPAR_CORE_2009__shift7 (2042_PB0188.1_JASPAR_CORE_2009_) 0.814 0.559 7.045 0.586 0.911 1.923 0.913 16 7 18 3 9 21 13 12.429 10
; oligos_6nt_mkv2 versus 2042_PB0188.1_JASPAR_CORE_2009_; m=10/35; ncol2=16; w=11; offset=-1; strand=D; shift=7; score=12.4286; -------sdrsWTCAATCr
; cor=0.814; Ncor=0.559; logoDP=7.045; NIcor=0.586; NsEucl=0.911; SSD=1.923; NSW=0.913; rcor=16; rNcor=7; rlogoDP=18; rNIcor=3; rNsEucl=9; rSSD=21; rNSW=13; rank_mean=12.429; match_rank=10
a	0	0	0	0	0	0	0	22	34	40	24	70	5	2	93	93	3	12	59
c	0	0	0	0	0	0	0	30	5	16	26	3	2	85	1	1	2	69	2
g	0	0	0	0	0	0	0	37	34	35	39	1	1	6	1	3	5	1	36
t	0	0	0	0	0	0	0	12	27	10	10	26	92	7	5	2	90	18	4
5197_CUX1_DBD_3_HumanTF_1.0__shift9 (5197_CUX1_DBD_3_HumanTF_1.0_) 0.792 0.720 9.238 0.710 0.896 2.148 0.893 20 1 6 1 18 28 21 13.571 11
; oligos_6nt_mkv2 versus 5197_CUX1_DBD_3_HumanTF_1.0_; m=11/35; ncol2=10; w=10; offset=1; strand=D; shift=9; score=13.5714; ---------TrATCrATam
; cor=0.792; Ncor=0.720; logoDP=9.238; NIcor=0.710; NsEucl=0.896; SSD=2.148; NSW=0.893; rcor=20; rNcor=1; rlogoDP=6; rNIcor=1; rNsEucl=18; rSSD=28; rNSW=21; rank_mean=13.571; match_rank=11
a	0	0	0	0	0	0	0	0	0	4099	25659	25659	71	51	9580	25659	150	25659	8168
c	0	0	0	0	0	0	0	0	0	4649	3296	109	294	25659	264	45	95	9420	7633
g	0	0	0	0	0	0	0	0	0	2401	15550	192	77	53	16079	85	29	7560	3958
t	0	0	0	0	0	0	0	0	0	25659	7605	167	25659	595	130	231	25659	7079	5900
5776_SOX2_full_2_HumanTF_1.0__rc_shift10 (5776_SOX2_full_2_HumanTF_1.0__rc) 0.870 0.412 9.016 0.406 0.907 1.399 0.922 9 28 7 23 10 13 9 14.143 12
; oligos_6nt_mkv2 versus 5776_SOX2_full_2_HumanTF_1.0__rc; m=12/35; ncol2=17; w=9; offset=2; strand=R; shift=10; score=14.1429; ----------kATCAATGk
; cor=0.870; Ncor=0.412; logoDP=9.016; NIcor=0.406; NsEucl=0.907; SSD=1.399; NSW=0.922; rcor=9; rNcor=28; rlogoDP=7; rNIcor=23; rNsEucl=10; rSSD=13; rNSW=9; rank_mean=14.143; match_rank=12
a	0	0	0	0	0	0	0	0	0	0	17	85	1	0	85	85	0	4	11
c	0	0	0	0	0	0	0	0	0	0	3	4	0	85	0	0	0	0	14
g	0	0	0	0	0	0	0	0	0	0	29	6	0	0	0	0	0	85	25
t	0	0	0	0	0	0	0	0	0	0	36	1	85	0	0	0	85	0	35
2653_MA0434.1_JASPAR_CORE_2009__shift6 (2653_MA0434.1_JASPAR_CORE_2009_) 0.845 0.455 6.405 0.438 0.894 1.100 0.921 13 16 22 12 19 8 10 14.286 13
; oligos_6nt_mkv2 versus 2653_MA0434.1_JASPAR_CORE_2009_; m=13/35; ncol2=9; w=7; offset=-2; strand=D; shift=6; score=14.2857; ------yGymrATCm----
; cor=0.845; Ncor=0.455; logoDP=6.405; NIcor=0.438; NsEucl=0.894; SSD=1.100; NSW=0.921; rcor=13; rNcor=16; rlogoDP=22; rNIcor=12; rNsEucl=19; rSSD=8; rNSW=10; rank_mean=14.286; match_rank=13
a	0	0	0	0	0	0	11	0	9	63	40	100	0	0	36	0	0	0	0
c	0	0	0	0	0	0	36	0	26	26	0	0	0	100	30	0	0	0	0
g	0	0	0	0	0	0	11	100	0	0	60	0	0	0	17	0	0	0	0
t	0	0	0	0	0	0	41	0	65	11	0	0	100	0	17	0	0	0	0
5199_CUX2_DBD_2_HumanTF_1.0__shift9 (5199_CUX2_DBD_2_HumanTF_1.0_) 0.768 0.698 8.936 0.681 0.890 2.407 0.880 26 2 8 2 21 33 27 17.000 14
; oligos_6nt_mkv2 versus 5199_CUX2_DBD_2_HumanTF_1.0_; m=14/35; ncol2=10; w=10; offset=1; strand=D; shift=9; score=     17; ---------TrATCRATaa
; cor=0.768; Ncor=0.698; logoDP=8.936; NIcor=0.681; NsEucl=0.890; SSD=2.407; NSW=0.880; rcor=26; rNcor=2; rlogoDP=8; rNIcor=2; rNsEucl=21; rSSD=33; rNSW=27; rank_mean=17.000; match_rank=14
a	0	0	0	0	0	0	0	0	0	8111	45569	45569	479	74	13767	45569	396	45569	19809
c	0	0	0	0	0	0	0	0	0	4573	5067	250	1841	45569	208	69	278	11730	9534
g	0	0	0	0	0	0	0	0	0	4247	23534	540	485	94	31803	163	66	7587	5056
t	0	0	0	0	0	0	0	0	0	45569	12191	345	45569	736	395	191	45569	12097	11171
1000_UP00185_UniPROBE_20120919__shift5 (1000_UP00185_UniPROBE_20120919_) 0.780 0.505 6.380 0.516 0.904 2.227 0.899 21 10 23 8 13 29 18 17.429 15
; oligos_6nt_mkv2 versus 1000_UP00185_UniPROBE_20120919_; m=15/35; ncol2=17; w=11; offset=-3; strand=D; shift=5; score=17.4286; -----yyaymCATCAAwmw
; cor=0.780; Ncor=0.505; logoDP=6.380; NIcor=0.516; NsEucl=0.904; SSD=2.227; NSW=0.899; rcor=21; rNcor=10; rlogoDP=23; rNIcor=8; rNsEucl=13; rSSD=29; rNSW=18; rank_mean=17.429; match_rank=15
a	0	0	0	0	0	21	6	59	12	37	11	86	3	3	93	74	31	32	39
c	0	0	0	0	0	28	50	4	40	39	73	2	1	95	3	6	5	32	14
g	0	0	0	0	0	15	15	14	9	11	9	7	1	1	2	3	6	15	9
t	0	0	0	0	0	36	29	23	39	13	7	5	95	1	2	17	58	21	38
2984_PH0134.1_JASPAR_CORE_2009__shift5 (2984_PH0134.1_JASPAR_CORE_2009_) 0.780 0.505 6.380 0.516 0.904 2.227 0.899 21 10 23 8 13 29 18 17.429 16
; oligos_6nt_mkv2 versus 2984_PH0134.1_JASPAR_CORE_2009_; m=16/35; ncol2=17; w=11; offset=-3; strand=D; shift=5; score=17.4286; -----yyaymCATCAAwmw
; cor=0.780; Ncor=0.505; logoDP=6.380; NIcor=0.516; NsEucl=0.904; SSD=2.227; NSW=0.899; rcor=21; rNcor=10; rlogoDP=23; rNIcor=8; rNsEucl=13; rSSD=29; rNSW=18; rank_mean=17.429; match_rank=16
a	0	0	0	0	0	21	6	59	12	37	11	86	3	3	93	74	31	32	39
c	0	0	0	0	0	28	49	3	40	39	73	2	1	95	3	6	5	32	14
g	0	0	0	0	0	15	15	14	9	11	9	7	1	1	2	3	6	15	9
t	0	0	0	0	0	36	29	23	39	13	7	5	95	1	2	17	58	21	38
5195_CUX1_DBD_1_HumanTF_1.0__shift0 (5195_CUX1_DBD_1_HumanTF_1.0_) 0.854 0.405 7.521 0.397 0.905 1.447 0.920 11 34 16 25 12 15 11 17.714 17
; oligos_6nt_mkv2 versus 5195_CUX1_DBD_1_HumanTF_1.0_; m=17/35; ncol2=17; w=9; offset=-8; strand=D; shift=0; score=17.7143; ATCrATmmstrATCrAT--
; cor=0.854; Ncor=0.405; logoDP=7.521; NIcor=0.397; NsEucl=0.905; SSD=1.447; NSW=0.920; rcor=11; rNcor=34; rlogoDP=16; rNIcor=25; rNsEucl=12; rSSD=15; rNSW=11; rank_mean=17.714; match_rank=17
a	18540	327	448	5977	18540	1598	7788	7150	4224	3402	6466	18540	245	353	7775	18540	1425	0	0
c	217	549	18540	268	196	565	4732	5224	6088	3307	1417	217	338	18540	308	198	414	0	0
g	645	252	307	12562	221	195	2182	3370	4885	3606	6842	639	184	235	10764	246	165	0	0
t	948	18540	1083	219	332	18540	3837	2796	3344	8224	3814	793	18540	371	196	478	18540	0	0
2329_CN0166.1_JASPAR_CORE_2009__shift2 (2329_CN0166.1_JASPAR_CORE_2009_) 0.850 0.400 8.262 0.376 0.894 1.446 0.910 12 35 9 27 20 14 14 18.714 18
; oligos_6nt_mkv2 versus 2329_CN0166.1_JASPAR_CORE_2009_; m=18/35; ncol2=14; w=8; offset=-6; strand=D; shift=2; score=18.7143; --CATGCTGAGATCAA---
; cor=0.850; Ncor=0.400; logoDP=8.262; NIcor=0.376; NsEucl=0.894; SSD=1.446; NSW=0.910; rcor=12; rNcor=35; rlogoDP=9; rNIcor=27; rNsEucl=20; rSSD=14; rNSW=14; rank_mean=18.714; match_rank=18
a	0	0	2	42	2	2	0	0	0	48	1	41	2	3	49	47	0	0	0
c	0	0	46	5	0	1	49	0	0	0	0	5	2	40	0	0	0	0	0
g	0	0	0	0	1	45	0	0	49	1	48	0	2	6	0	0	0	0	0
t	0	0	1	2	46	1	0	49	0	0	0	3	43	0	0	2	0	0	0
6138_1j5n_A_3D-footprint_20130124__shift11 (6138_1j5n_A_3D-footprint_20130124_) 0.773 0.492 9.628 0.518 0.855 2.048 0.854 24 12 5 7 31 25 31 19.286 19
; oligos_6nt_mkv2 versus 6138_1j5n_A_3D-footprint_20130124_; m=19/35; ncol2=7; w=7; offset=3; strand=D; shift=11; score=19.2857; -----------AACAATc-
; cor=0.773; Ncor=0.492; logoDP=9.628; NIcor=0.518; NsEucl=0.855; SSD=2.048; NSW=0.854; rcor=24; rNcor=12; rlogoDP=5; rNIcor=7; rNsEucl=31; rSSD=25; rNSW=31; rank_mean=19.286; match_rank=19
a	0	0	0	0	0	0	0	0	0	0	0	96	76	0	96	96	0	19	0
c	0	0	0	0	0	0	0	0	0	0	0	0	0	96	0	0	0	38	0
g	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	19	0
t	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	96	20	0
3788_UP00091_UniPROBE_20120919__shift6 (3788_UP00091_UniPROBE_20120919_) 0.753 0.517 7.714 0.528 0.897 2.556 0.884 32 8 12 5 17 35 26 19.286 20
; oligos_6nt_mkv2 versus 3788_UP00091_UniPROBE_20120919_; m=20/35; ncol2=16; w=11; offset=-2; strand=D; shift=6; score=19.2857; ------wwdrgAACAATwa
; cor=0.753; Ncor=0.517; logoDP=7.714; NIcor=0.528; NsEucl=0.897; SSD=2.556; NSW=0.884; rcor=32; rNcor=8; rlogoDP=12; rNIcor=5; rNsEucl=17; rSSD=35; rNSW=26; rank_mean=19.286; match_rank=20
a	0	0	0	0	0	0	31	26	26	45	15	83	0.98	1	0.97	0.97	0.03	49	45
c	0	0	0	0	0	0	13	20	12	9	9	3	0	93	0	0	0.01	2	10
g	0	0	0	0	0	0	17	14	26	29	63	13	0.01	1	0.01	0.01	0	8	24
t	0	0	0	0	0	0	39	40	36	17	13	1	0.01	5	0.02	0.01	0.95	41	21
2682_PB0072.1_JASPAR_CORE_2009__shift6 (2682_PB0072.1_JASPAR_CORE_2009_) 0.753 0.517 7.665 0.527 0.897 2.555 0.884 33 9 15 6 16 34 25 19.714 21
; oligos_6nt_mkv2 versus 2682_PB0072.1_JASPAR_CORE_2009_; m=21/35; ncol2=16; w=11; offset=-2; strand=D; shift=6; score=19.7143; ------wwdrgAACAATwa
; cor=0.753; Ncor=0.517; logoDP=7.665; NIcor=0.527; NsEucl=0.897; SSD=2.555; NSW=0.884; rcor=33; rNcor=9; rlogoDP=15; rNIcor=6; rNsEucl=16; rSSD=34; rNSW=25; rank_mean=19.714; match_rank=21
a	0	0	0	0	0	0	31	26	26	45	15	83	98	1	97	97	3	49	45
c	0	0	0	0	0	0	13	20	12	9	9	3	0	94	0	0	1	2	10
g	0	0	0	0	0	0	17	15	26	29	63	13	1	1	1	1	0	9	24
t	0	0	0	0	0	0	39	40	36	17	13	2	1	5	2	1	95	41	20
7440_HNF6_f1_HOCOMOCO_v9__rc_shift6 (7440_HNF6_f1_HOCOMOCO_v9__rc) 0.805 0.681 0.872 -0.173 0.907 2.093 0.905 17 3 30 35 11 26 16 19.714 22
; oligos_6nt_mkv2 versus 7440_HNF6_f1_HOCOMOCO_v9__rc; m=22/35; ncol2=13; w=11; offset=-2; strand=R; shift=6; score=19.7143; ------whwaARTCAATAw
; cor=0.805; Ncor=0.681; logoDP=0.872; NIcor=-0.173; NsEucl=0.907; SSD=2.093; NSW=0.905; rcor=17; rNcor=3; rlogoDP=30; rNIcor=35; rNsEucl=11; rSSD=26; rNSW=16; rank_mean=19.714; match_rank=22
a	0	0	0	0	0	0	9	9	11	16	19	17	0	0	20	24	0	17	13
c	0	0	0	0	0	0	3	7	2	0	2	0	1	24	3	0	0	1	0
g	0	0	0	0	0	0	5	2	3	3	1	7	0	0	1	0	0	4	4
t	0	0	0	0	0	0	7	6	8	5	2	0	23	0	0	0	24	2	7
7627_SOX10_si_HOCOMOCO_v9__shift13 (7627_SOX10_si_HOCOMOCO_v9_) 0.801 0.437 5.845 0.418 0.867 1.269 0.894 19 19 27 19 28 11 20 20.429 23
; oligos_6nt_mkv2 versus 7627_SOX10_si_HOCOMOCO_v9_; m=23/35; ncol2=6; w=6; offset=5; strand=D; shift=13; score=20.4286; -------------CAAwGr
; cor=0.801; Ncor=0.437; logoDP=5.845; NIcor=0.418; NsEucl=0.867; SSD=1.269; NSW=0.894; rcor=19; rNcor=19; rlogoDP=27; rNIcor=19; rNsEucl=28; rSSD=11; rNSW=20; rank_mean=20.429; match_rank=23
a	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32	31	15	2	13
c	0	0	0	0	0	0	0	0	0	0	0	0	0	31	0	0	0	0	7
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	29	10
t	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	14	1	2
6753_6gat_A_3D-footprint_20130124__shift9 (6753_6gat_A_3D-footprint_20130124_) 0.803 0.438 4.707 0.416 0.863 1.346 0.888 18 18 28 20 29 12 23 21.143 24
; oligos_6nt_mkv2 versus 6753_6gat_A_3D-footprint_20130124_; m=24/35; ncol2=6; w=6; offset=1; strand=D; shift=9; score=21.1429; ---------CnATCA----
; cor=0.803; Ncor=0.438; logoDP=4.707; NIcor=0.416; NsEucl=0.863; SSD=1.346; NSW=0.888; rcor=18; rNcor=18; rlogoDP=28; rNIcor=20; rNsEucl=29; rSSD=12; rNSW=23; rank_mean=21.143; match_rank=24
a	0	0	0	0	0	0	0	0	0	11	24	67	9	0	96	0	0	0	0
c	0	0	0	0	0	0	0	0	0	67	24	9	11	96	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	9	24	11	9	0	0	0	0	0	0
t	0	0	0	0	0	0	0	0	0	9	24	9	67	0	0	0	0	0	0
3061_FNR_RegulonDB_7.5__rc_shift2 (3061_FNR_RegulonDB_7.5__rc) 0.863 0.406 6.281 0.405 0.889 1.568 0.902 10 33 26 24 22 17 17 21.286 25
; oligos_6nt_mkv2 versus 3061_FNR_RegulonDB_7.5__rc; m=25/35; ncol2=14; w=8; offset=-6; strand=R; shift=2; score=21.2857; --TTGATrtwrAtCAa---
; cor=0.863; Ncor=0.406; logoDP=6.281; NIcor=0.405; NsEucl=0.889; SSD=1.568; NSW=0.902; rcor=10; rNcor=33; rlogoDP=26; rNIcor=24; rNsEucl=22; rSSD=17; rNSW=17; rank_mean=21.286; match_rank=25
a	0	0	2	2	6	79	6	29	12	29	35	57	14	2	64	48	0	0	0
c	0	0	0	0	5	0	11	11	11	16	3	13	8	58	6	10	0	0	0
g	0	0	8	1	72	0	0	23	12	10	28	3	14	10	8	8	0	0	0
t	0	0	73	80	0	4	66	20	48	28	17	10	47	13	5	17	0	0	0
1741_MA0182.1_JASPAR_CORE_2009__rc_shift13 (1741_MA0182.1_JASPAR_CORE_2009__rc) 0.826 0.413 0.779 -0.103 0.877 1.096 0.909 14 27 32 31 25 7 15 21.571 26
; oligos_6nt_mkv2 versus 1741_MA0182.1_JASPAR_CORE_2009__rc; m=26/35; ncol2=7; w=6; offset=5; strand=R; shift=13; score=21.5714; -------------yAATwA
; cor=0.826; Ncor=0.413; logoDP=0.779; NIcor=-0.103; NsEucl=0.877; SSD=1.096; NSW=0.909; rcor=14; rNcor=27; rlogoDP=32; rNIcor=31; rNsEucl=25; rSSD=7; rNSW=15; rank_mean=21.571; match_rank=26
a	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24	30	0	17	22
c	0	0	0	0	0	0	0	0	0	0	0	0	0	15	6	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
t	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	30	13	7
7634_SOX5_f1_HOCOMOCO_v9__shift11 (7634_SOX5_f1_HOCOMOCO_v9_) 0.767 0.488 6.350 0.491 0.857 2.004 0.857 27 14 25 11 30 24 30 23.000 27
; oligos_6nt_mkv2 versus 7634_SOX5_f1_HOCOMOCO_v9_; m=27/35; ncol2=7; w=7; offset=3; strand=D; shift=11; score=     23; -----------AACAATr-
; cor=0.767; Ncor=0.488; logoDP=6.350; NIcor=0.491; NsEucl=0.857; SSD=2.004; NSW=0.857; rcor=27; rNcor=14; rlogoDP=25; rNIcor=11; rNsEucl=30; rSSD=24; rNSW=30; rank_mean=23.000; match_rank=27
a	0	0	0	0	0	0	0	0	0	0	0	61	64	2	67	62	5	27	0
c	0	0	0	0	0	0	0	0	0	0	0	1	0	62	0	5	4	11	0
g	0	0	0	0	0	0	0	0	0	0	0	3	4	2	1	2	0	22	0
t	0	0	0	0	0	0	0	0	0	0	0	4	1	3	1	0	60	9	0
3893_UP00198_UniPROBE_20120919__shift3 (3893_UP00198_UniPROBE_20120919_) 0.761 0.428 6.819 0.429 0.882 2.237 0.876 28 21 20 15 23 31 28 23.714 28
; oligos_6nt_mkv2 versus 3893_UP00198_UniPROBE_20120919_; m=28/35; ncol2=14; w=9; offset=-5; strand=D; shift=3; score=23.7143; ---rTGATssmATCAaw--
; cor=0.761; Ncor=0.428; logoDP=6.819; NIcor=0.429; NsEucl=0.882; SSD=2.237; NSW=0.876; rcor=28; rNcor=21; rlogoDP=20; rNIcor=15; rNsEucl=23; rSSD=31; rNSW=28; rank_mean=23.714; match_rank=28
a	0	0	0	34	0.03	4	98	0.04	10	22	54	95	0.01	0	95	61	36	0	0
c	0	0	0	18	0	2	1	0	37	28	34	3	0.01	0.97	1	14	21	0	0
g	0	0	0	26	0	93	1	0.06	29	35	8	1	0	0	1	15	10	0	0
t	0	0	0	22	0.96	1	0	0.90	24	15	4	1	0.99	0.02	3	10	33	0	0
2872_PH0014.1_JASPAR_CORE_2009__shift3 (2872_PH0014.1_JASPAR_CORE_2009_) 0.761 0.428 6.819 0.429 0.882 2.237 0.876 28 21 20 15 23 31 28 23.714 29
; oligos_6nt_mkv2 versus 2872_PH0014.1_JASPAR_CORE_2009_; m=29/35; ncol2=14; w=9; offset=-5; strand=D; shift=3; score=23.7143; ---rTGATssmATCAaw--
; cor=0.761; Ncor=0.428; logoDP=6.819; NIcor=0.429; NsEucl=0.882; SSD=2.237; NSW=0.876; rcor=28; rNcor=21; rlogoDP=20; rNIcor=15; rNsEucl=23; rSSD=31; rNSW=28; rank_mean=23.714; match_rank=29
a	0	0	0	34	3	4	98	4	10	22	54	95	1	0	95	61	36	0	0
c	0	0	0	18	0	2	1	0	37	28	34	3	1	97	1	14	21	0	0
g	0	0	0	26	0	93	1	6	29	35	8	1	0	0	1	15	10	0	0
t	0	0	0	22	96	1	1	90	24	15	4	1	99	2	3	10	33	0	0
2619_MA0389.1_JASPAR_CORE_2009__rc_shift7 (2619_MA0389.1_JASPAR_CORE_2009__rc) 0.771 0.450 0.785 -0.004 0.872 1.616 0.885 25 17 31 30 27 18 24 24.571 30
; oligos_6nt_mkv2 versus 2619_MA0389.1_JASPAR_CORE_2009__rc; m=30/35; ncol2=8; w=7; offset=-1; strand=R; shift=7; score=24.5714; -------gkAGATCt----
; cor=0.771; Ncor=0.450; logoDP=0.785; NIcor=-0.004; NsEucl=0.872; SSD=1.616; NSW=0.885; rcor=25; rNcor=17; rlogoDP=31; rNIcor=30; rNsEucl=27; rSSD=18; rNSW=24; rank_mean=24.571; match_rank=30
a	0	0	0	0	0	0	0	16	11	74	0	85	3	2	6	0	0	0	0
c	0	0	0	0	0	0	0	18	13	3	0	2	0	90	19	0	0	0	0
g	0	0	0	0	0	0	0	42	30	19	99	0	0	2	9	0	0	0	0
t	0	0	0	0	0	0	0	24	46	4	0	13	97	6	66	0	0	0	0
2559_MA0301.1_JASPAR_CORE_2009__rc_shift6 (2559_MA0301.1_JASPAR_CORE_2009__rc) 0.776 0.418 0.126 -0.106 0.874 1.545 0.890 23 25 35 32 26 16 22 25.571 31
; oligos_6nt_mkv2 versus 2559_MA0301.1_JASPAR_CORE_2009__rc; m=31/35; ncol2=9; w=7; offset=-2; strand=R; shift=6; score=25.5714; ------kktrGATCt----
; cor=0.776; Ncor=0.418; logoDP=0.126; NIcor=-0.106; NsEucl=0.874; SSD=1.545; NSW=0.890; rcor=23; rNcor=25; rlogoDP=35; rNIcor=32; rNsEucl=26; rSSD=16; rNSW=22; rank_mean=25.571; match_rank=31
a	0	0	0	0	0	0	21	17	12	63	2	87	8	1	6	0	0	0	0
c	0	0	0	0	0	0	21	21	18	4	1	1	0	88	20	0	0	0	0
g	0	0	0	0	0	0	25	33	19	27	94	0	0	2	9	0	0	0	0
t	0	0	0	0	0	0	32	28	51	6	3	12	92	8	65	0	0	0	0
7604_RARG_f1_HOCOMOCO_v9__shift9 (7604_RARG_f1_HOCOMOCO_v9_) 0.752 0.410 7.248 0.429 0.840 1.845 0.846 34 30 17 14 33 19 33 25.714 32
; oligos_6nt_mkv2 versus 7604_RARG_f1_HOCOMOCO_v9_; m=32/35; ncol2=6; w=6; offset=1; strand=D; shift=9; score=25.7143; ---------AGKTCA----
; cor=0.752; Ncor=0.410; logoDP=7.248; NIcor=0.429; NsEucl=0.840; SSD=1.845; NSW=0.846; rcor=34; rNcor=30; rlogoDP=17; rNIcor=14; rNsEucl=33; rSSD=19; rNSW=33; rank_mean=25.714; match_rank=32
a	0	0	0	0	0	0	0	0	0	23	0	0	0	0	27	0	0	0	0
c	0	0	0	0	0	0	0	0	0	0	0	0	0	29	2	0	0	0	0
g	0	0	0	0	0	0	0	0	0	6	29	21	0	0	0	0	0	0	0
t	0	0	0	0	0	0	0	0	0	0	0	8	29	0	0	0	0	0	0
2526_MA0151.1_JASPAR_CORE_2009__shift11 (2526_MA0151.1_JASPAR_CORE_2009_) 0.758 0.414 8.186 0.386 0.833 1.997 0.834 31 26 10 26 35 23 35 26.571 33
; oligos_6nt_mkv2 versus 2526_MA0151.1_JASPAR_CORE_2009_; m=33/35; ncol2=6; w=6; offset=3; strand=D; shift=11; score=26.5714; -----------ATyAAA--
; cor=0.758; Ncor=0.414; logoDP=8.186; NIcor=0.386; NsEucl=0.833; SSD=1.997; NSW=0.834; rcor=31; rNcor=26; rlogoDP=10; rNIcor=26; rNsEucl=35; rSSD=23; rNSW=35; rank_mean=26.571; match_rank=33
a	0	0	0	0	0	0	0	0	0	0	0	27	0	1	27	27	20	0	0
c	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
t	0	0	0	0	0	0	0	0	0	0	0	0	27	17	0	0	6	0	0
1793_MA0235.1_JASPAR_CORE_2009__rc_shift9 (1793_MA0235.1_JASPAR_CORE_2009__rc) 0.759 0.483 0.148 -0.170 0.853 2.124 0.848 30 15 33 34 32 27 32 29.000 34
; oligos_6nt_mkv2 versus 1793_MA0235.1_JASPAR_CORE_2009__rc; m=34/35; ncol2=7; w=7; offset=1; strand=R; shift=9; score=     29; ---------hAATCAA---
; cor=0.759; Ncor=0.483; logoDP=0.148; NIcor=-0.170; NsEucl=0.853; SSD=2.124; NSW=0.848; rcor=30; rNcor=15; rlogoDP=33; rNIcor=34; rNsEucl=32; rSSD=27; rNSW=32; rank_mean=29.000; match_rank=34
a	0	0	0	0	0	0	0	0	0	6	15	15	0	0	15	12	0	0	0
c	0	0	0	0	0	0	0	0	0	4	0	0	0	15	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
t	0	0	0	0	0	0	0	0	0	5	0	0	15	0	0	1	0	0	0
2670_MF0011.1_JASPAR_CORE_2009__rc_shift11 (2670_MF0011.1_JASPAR_CORE_2009__rc) 0.751 0.410 1.677 0.106 0.834 1.984 0.835 35 31 29 29 34 22 34 30.571 35
; oligos_6nt_mkv2 versus 2670_MF0011.1_JASPAR_CORE_2009__rc; m=35/35; ncol2=6; w=6; offset=3; strand=R; shift=11; score=30.5714; -----------aACAAw--
; cor=0.751; Ncor=0.410; logoDP=1.677; NIcor=0.106; NsEucl=0.834; SSD=1.984; NSW=0.835; rcor=35; rNcor=31; rlogoDP=29; rNIcor=29; rNsEucl=34; rSSD=22; rNSW=34; rank_mean=30.571; match_rank=35
a	0	0	0	0	0	0	0	0	0	0	0	61.71	76.2	7.53	92.51	77.94	30.58	0	0
c	0	0	0	0	0	0	0	0	0	0	0	10.7	3.14	74.53	0.92	14.03	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	17.54	8.38	6.65	4.96	6.34	9	0	0
t	0	0	0	0	0	0	0	0	0	0	0	10.05	12.28	11.29	1.61	1.68	60.43	0	0