; matrix-scan -v 1 -quick -seq_format fasta -i $RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/oligos_7nt_mkv2/peak-motifs_oligos_7nt_mkv2.tf -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score -5 -bginput -markov 1 -return distrib -return occ_proba -o $RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/oligos_7nt_mkv2/peak-motifs_oligos_7nt_mkv2_scan_mkv1_enrichment.tab ; Quick counting mode ; Input files ; input /vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/data/sequences/peak-motifs_test_maxlen1000.fasta ; Matrix files ; matrix 1 /vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/oligos_7nt_mkv2/peak-motifs_oligos_7nt_mkv2.tf ; Sequence format fasta ; Output files ; output /vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/oligos_7nt_mkv2/peak-motifs_oligos_7nt_mkv2_scan_mkv1_enrichment.tab ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.29011 ; c 0.21156 ; g 0.20757 ; t 0.29076 ; Thresholds lower upper ; score -5 NA ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 oligos_7nt_mkv2 11 4 1 -21.300 11.700 33.000 a:0.290 c:0.212 g:0.208 t:0.291 ; ; Score distribution #matrix score occ occ_cum inv_cum inv_cum_freq occ_prior exp_occ occ_Pval occ_Eval occ_sig occ_sig_rank oligos_7nt_mkv2 -5.0 52 17580 2258 1.138334e-01 1.148073e-01 2277.32 6.696982e-01 7.701530e+01 -1.89 1 oligos_7nt_mkv2 -4.9 66 17646 2192 1.105062e-01 1.110551e-01 2202.89 6.004960e-01 6.905703e+01 -1.84 2 oligos_7nt_mkv2 -4.8 64 17710 2128 1.072797e-01 1.081929e-01 2146.11 6.638707e-01 7.634513e+01 -1.88 3 oligos_7nt_mkv2 -4.7 67 17777 2061 1.039020e-01 1.048953e-01 2080.70 6.793091e-01 7.812055e+01 -1.89 4 oligos_7nt_mkv2 -4.6 49 17826 2012 1.014317e-01 1.017899e-01 2019.10 5.696701e-01 6.551206e+01 -1.82 5 oligos_7nt_mkv2 -4.5 51 17877 1961 9.886066e-02 9.915755e-02 1966.89 5.590980e-01 6.429626e+01 -1.81 6 oligos_7nt_mkv2 -4.4 63 17940 1898 9.568461e-02 9.582573e-02 1900.80 5.304303e-01 6.099948e+01 -1.79 7 oligos_7nt_mkv2 -4.3 83 18023 1815 9.150030e-02 9.319126e-02 1848.54 7.968551e-01 9.163834e+01 -1.96 8 oligos_7nt_mkv2 -4.2 61 18084 1754 8.842509e-02 9.028119e-02 1790.82 8.222779e-01 9.456196e+01 -1.98 9 oligos_7nt_mkv2 -4.1 46 18130 1708 8.610607e-02 8.688649e-02 1723.48 6.553921e-01 7.537009e+01 -1.88 10 oligos_7nt_mkv2 -4.0 53 18183 1655 8.343416e-02 8.416170e-02 1669.43 6.475942e-01 7.447333e+01 -1.87 11 oligos_7nt_mkv2 -3.9 47 18230 1608 8.106473e-02 8.077652e-02 1602.28 4.445238e-01 5.112024e+01 -1.71 12 oligos_7nt_mkv2 -3.8 64 18294 1544 7.783827e-02 7.785826e-02 1544.40 5.079901e-01 5.841886e+01 -1.77 13 oligos_7nt_mkv2 -3.7 50 18344 1494 7.531760e-02 7.502988e-02 1488.29 4.427146e-01 5.091218e+01 -1.71 14 oligos_7nt_mkv2 -3.6 69 18413 1425 7.183908e-02 7.225214e-02 1433.19 5.927851e-01 6.817029e+01 -1.83 15 oligos_7nt_mkv2 -3.5 66 18479 1359 6.851180e-02 6.922162e-02 1373.08 6.570711e-01 7.556318e+01 -1.88 16 oligos_7nt_mkv2 -3.4 57 18536 1302 6.563823e-02 6.587367e-02 1306.67 5.572214e-01 6.408046e+01 -1.81 17 oligos_7nt_mkv2 -3.3 63 18599 1239 6.246219e-02 6.299690e-02 1249.61 6.258055e-01 7.196763e+01 -1.86 18 oligos_7nt_mkv2 -3.2 70 18669 1169 5.893325e-02 6.046689e-02 1199.42 8.213372e-01 9.445378e+01 -1.98 19 oligos_7nt_mkv2 -3.1 50 18719 1119 5.641258e-02 5.755899e-02 1141.74 7.599807e-01 8.739778e+01 -1.94 20 oligos_7nt_mkv2 -3.0 52 18771 1067 5.379109e-02 5.485592e-02 1088.12 7.491149e-01 8.614822e+01 -1.94 21 oligos_7nt_mkv2 -2.9 60 18831 1007 5.076628e-02 5.196709e-02 1030.82 7.811438e-01 8.983154e+01 -1.95 22 oligos_7nt_mkv2 -2.8 63 18894 944 4.759024e-02 4.932265e-02 978.36 8.738437e-01 1.004920e+02 -2.00 23 oligos_7nt_mkv2 -2.7 38 18932 906 4.567453e-02 4.668655e-02 926.07 7.548414e-01 8.680676e+01 -1.94 24 oligos_7nt_mkv2 -2.6 52 18984 854 4.305303e-02 4.442866e-02 881.29 8.307469e-01 9.553590e+01 -1.98 25 oligos_7nt_mkv2 -2.5 44 19028 810 4.083485e-02 4.215547e-02 836.20 8.270884e-01 9.511517e+01 -1.98 26 oligos_7nt_mkv2 -2.4 48 19076 762 3.841500e-02 3.973741e-02 788.23 8.343137e-01 9.594607e+01 -1.98 27 oligos_7nt_mkv2 -2.3 41 19117 721 3.634805e-02 3.751985e-02 744.24 8.121770e-01 9.340035e+01 -1.97 28 oligos_7nt_mkv2 -2.2 28 19145 693 3.493648e-02 3.570183e-02 708.18 7.245091e-01 8.331855e+01 -1.92 29 oligos_7nt_mkv2 -2.1 38 19183 655 3.302077e-02 3.391054e-02 672.65 7.608271e-01 8.749512e+01 -1.94 30 oligos_7nt_mkv2 -2.0 37 19220 618 3.115547e-02 3.226250e-02 639.96 8.162977e-01 9.387423e+01 -1.97 31 oligos_7nt_mkv2 -1.9 26 19246 592 2.984473e-02 3.078080e-02 610.57 7.827076e-01 9.001138e+01 -1.95 32 oligos_7nt_mkv2 -1.8 28 19274 564 2.843315e-02 2.928134e-02 580.82 7.662451e-01 8.811819e+01 -1.95 33 oligos_7nt_mkv2 -1.7 21 19295 543 2.737447e-02 2.808116e-02 557.02 7.323126e-01 8.421594e+01 -1.93 34 oligos_7nt_mkv2 -1.6 16 19311 527 2.656786e-02 2.716639e-02 538.87 7.038446e-01 8.094212e+01 -1.91 35 oligos_7nt_mkv2 -1.5 19 19330 508 2.561000e-02 2.604994e-02 516.73 6.574158e-01 7.560282e+01 -1.88 36 oligos_7nt_mkv2 -1.4 26 19356 482 2.429925e-02 2.521069e-02 500.08 7.993893e-01 9.192977e+01 -1.96 37 oligos_7nt_mkv2 -1.3 14 19370 468 2.359347e-02 2.419371e-02 479.91 7.151108e-01 8.223774e+01 -1.92 38 oligos_7nt_mkv2 -1.2 11 19381 457 2.303892e-02 2.342548e-02 464.67 6.469315e-01 7.439713e+01 -1.87 39 oligos_7nt_mkv2 -1.1 11 19392 446 2.248437e-02 2.261874e-02 448.67 5.571397e-01 6.407106e+01 -1.81 40 oligos_7nt_mkv2 -1.0 13 19405 433 2.182900e-02 2.174258e-02 431.29 4.733545e-01 5.443576e+01 -1.74 41 oligos_7nt_mkv2 -0.9 15 19420 418 2.107280e-02 2.097280e-02 416.02 4.675705e-01 5.377060e+01 -1.73 42 oligos_7nt_mkv2 -0.8 21 19441 397 2.001412e-02 2.008442e-02 398.39 5.350031e-01 6.152535e+01 -1.79 43 oligos_7nt_mkv2 -0.7 15 19456 382 1.925791e-02 1.913769e-02 379.62 4.578325e-01 5.265074e+01 -1.72 44 oligos_7nt_mkv2 -0.6 16 19472 366 1.845130e-02 1.831906e-02 363.38 4.519248e-01 5.197135e+01 -1.72 45 oligos_7nt_mkv2 -0.5 9 19481 357 1.799758e-02 1.755594e-02 348.24 3.250826e-01 3.738450e+01 -1.57 46 oligos_7nt_mkv2 -0.4 20 19501 337 1.698931e-02 1.673960e-02 332.05 3.994307e-01 4.593453e+01 -1.66 47 oligos_7nt_mkv2 -0.3 19 19520 318 1.603146e-02 1.597632e-02 316.91 4.829522e-01 5.553950e+01 -1.74 48 oligos_7nt_mkv2 -0.2 20 19540 298 1.502319e-02 1.518964e-02 301.30 5.838493e-01 6.714267e+01 -1.83 49 oligos_7nt_mkv2 -0.1 7 19547 291 1.467030e-02 1.435079e-02 284.66 3.605536e-01 4.146367e+01 -1.62 50 oligos_7nt_mkv2 0.0 16 19563 275 1.386368e-02 1.347748e-02 267.34 3.267305e-01 3.757401e+01 -1.57 51 oligos_7nt_mkv2 0.1 9 19572 266 1.340996e-02 1.275568e-02 253.02 2.137607e-01 2.458248e+01 -1.39 52 oligos_7nt_mkv2 0.2 14 19586 252 1.270417e-02 1.194698e-02 236.98 1.710372e-01 1.966928e+01 -1.29 53 oligos_7nt_mkv2 0.3 19 19605 233 1.174632e-02 1.124207e-02 223.00 2.590053e-01 2.978561e+01 -1.47 54 oligos_7nt_mkv2 0.4 12 19617 221 1.114136e-02 1.051967e-02 208.67 2.040775e-01 2.346891e+01 -1.37 55 oligos_7nt_mkv2 0.5 17 19634 204 1.028433e-02 9.906842e-03 196.51 3.051224e-01 3.508908e+01 -1.55 56 oligos_7nt_mkv2 0.6 11 19645 193 9.729784e-03 9.233744e-03 183.16 2.420791e-01 2.783909e+01 -1.44 57 oligos_7nt_mkv2 0.7 8 19653 185 9.326477e-03 8.640626e-03 171.40 1.573447e-01 1.809464e+01 -1.26 58 oligos_7nt_mkv2 0.8 11 19664 174 8.771930e-03 8.063988e-03 159.96 1.415368e-01 1.627674e+01 -1.21 59 oligos_7nt_mkv2 0.9 7 19671 167 8.419036e-03 7.421825e-03 147.22 5.757012e-02 6.620564e+00 -0.82 60 oligos_7nt_mkv2 1.0 11 19682 156 7.864489e-03 6.884654e-03 136.56 5.430178e-02 6.244705e+00 -0.80 61 oligos_7nt_mkv2 1.1 10 19692 146 7.360355e-03 6.440802e-03 127.76 6.001833e-02 6.902108e+00 -0.84 62 oligos_7nt_mkv2 1.2 13 19705 133 6.704981e-03 5.946242e-03 117.95 9.134168e-02 1.050429e+01 -1.02 63 oligos_7nt_mkv2 1.3 10 19715 123 6.200847e-03 5.529885e-03 109.69 1.113699e-01 1.280753e+01 -1.11 64 oligos_7nt_mkv2 1.4 9 19724 114 5.747126e-03 5.173759e-03 102.63 1.413975e-01 1.626071e+01 -1.21 65 oligos_7nt_mkv2 1.5 8 19732 106 5.343819e-03 4.810671e-03 95.42 1.507476e-01 1.733597e+01 -1.24 66 oligos_7nt_mkv2 1.6 6 19738 100 5.041339e-03 4.580732e-03 90.86 1.810262e-01 2.081801e+01 -1.32 67 oligos_7nt_mkv2 1.7 9 19747 91 4.587618e-03 4.314501e-03 85.58 2.927022e-01 3.366075e+01 -1.53 68 oligos_7nt_mkv2 1.8 2 19749 89 4.486792e-03 4.102672e-03 81.38 2.124763e-01 2.443478e+01 -1.39 69 oligos_7nt_mkv2 1.9 3 19752 86 4.335552e-03 3.904535e-03 77.45 1.788291e-01 2.056535e+01 -1.31 70 oligos_7nt_mkv2 2.0 4 19756 82 4.133898e-03 3.723573e-03 73.86 1.854314e-01 2.132461e+01 -1.33 71 oligos_7nt_mkv2 2.1 2 19758 80 4.033071e-03 3.579876e-03 71.01 1.563706e-01 1.798262e+01 -1.25 72 oligos_7nt_mkv2 2.2 3 19761 77 3.881831e-03 3.433522e-03 68.11 1.541992e-01 1.773291e+01 -1.25 73 oligos_7nt_mkv2 2.3 1 19762 76 3.831418e-03 3.287010e-03 65.20 1.027356e-01 1.181459e+01 -1.07 74 oligos_7nt_mkv2 2.4 3 19765 73 3.680177e-03 3.165954e-03 62.80 1.118302e-01 1.286047e+01 -1.11 75 oligos_7nt_mkv2 2.5 4 19769 69 3.478524e-03 3.034382e-03 60.19 1.422170e-01 1.635495e+01 -1.21 76 oligos_7nt_mkv2 2.6 3 19772 66 3.327284e-03 2.877800e-03 57.08 1.332364e-01 1.532218e+01 -1.19 77 oligos_7nt_mkv2 2.7 2 19774 64 3.226457e-03 2.746961e-03 54.49 1.125811e-01 1.294683e+01 -1.11 78 oligos_7nt_mkv2 2.8 6 19780 58 2.923977e-03 2.637628e-03 52.32 2.331914e-01 2.681701e+01 -1.43 79 oligos_7nt_mkv2 2.9 4 19784 54 2.722323e-03 2.497294e-03 49.54 2.809750e-01 3.231213e+01 -1.51 80 oligos_7nt_mkv2 3.0 3 19787 51 2.571083e-03 2.359997e-03 46.81 2.888640e-01 3.321936e+01 -1.52 81 oligos_7nt_mkv2 3.1 3 19790 48 2.419843e-03 2.213438e-03 43.91 2.875074e-01 3.306335e+01 -1.52 82 oligos_7nt_mkv2 3.2 2 19792 46 2.319016e-03 2.072977e-03 41.12 2.426670e-01 2.790671e+01 -1.45 83 oligos_7nt_mkv2 3.3 2 19794 44 2.218189e-03 1.940196e-03 38.49 2.064742e-01 2.374453e+01 -1.38 84 oligos_7nt_mkv2 3.4 2 19796 42 2.117362e-03 1.821968e-03 36.14 1.844224e-01 2.120858e+01 -1.33 85 oligos_7nt_mkv2 3.5 1 19797 41 2.066949e-03 1.704488e-03 33.81 1.262712e-01 1.452118e+01 -1.16 86 oligos_7nt_mkv2 3.6 3 19800 38 1.915709e-03 1.571894e-03 31.18 1.300114e-01 1.495132e+01 -1.17 87 oligos_7nt_mkv2 3.7 3 19803 35 1.764469e-03 1.443275e-03 28.63 1.370435e-01 1.576001e+01 -1.20 88 oligos_7nt_mkv2 3.8 1 19804 34 1.714055e-03 1.344013e-03 26.66 9.587326e-02 1.102542e+01 -1.04 89 oligos_7nt_mkv2 3.9 2 19806 32 1.613228e-03 1.232430e-03 24.45 8.100338e-02 9.315388e+00 -0.97 90 oligos_7nt_mkv2 4.0 3 19809 29 1.461988e-03 1.137934e-03 22.57 1.088152e-01 1.251375e+01 -1.10 91 oligos_7nt_mkv2 4.1 3 19812 26 1.310748e-03 1.020056e-03 20.23 1.228011e-01 1.412212e+01 -1.15 92 oligos_7nt_mkv2 4.3 2 19814 24 1.209921e-03 8.518243e-04 16.90 5.997539e-02 6.897170e+00 -0.84 93 oligos_7nt_mkv2 4.4 1 19815 23 1.159508e-03 7.786279e-04 15.44 4.271456e-02 4.912174e+00 -0.69 94 oligos_7nt_mkv2 4.5 2 19817 21 1.058681e-03 7.042103e-04 13.97 4.695982e-02 5.400380e+00 -0.73 95 oligos_7nt_mkv2 4.7 1 19818 20 1.008268e-03 5.756263e-04 11.42 1.334854e-02 1.535082e+00 -0.19 96 oligos_7nt_mkv2 4.8 1 19819 19 9.578544e-04 5.242012e-04 10.40 1.047453e-02 1.204571e+00 -0.08 97 oligos_7nt_mkv2 4.9 1 19820 18 9.074410e-04 4.695235e-04 9.31 7.390117e-03 8.498635e-01 0.07 98 oligos_7nt_mkv2 5.4 1 19821 17 8.570276e-04 3.216286e-04 6.38 3.489634e-04 4.013079e-02 1.40 99 oligos_7nt_mkv2 5.5 1 19822 16 8.066142e-04 3.047970e-04 6.05 5.501918e-04 6.327206e-02 1.20 100 oligos_7nt_mkv2 5.8 1 19823 15 7.562008e-04 2.682659e-04 5.32 4.283693e-04 4.926247e-02 1.31 101 oligos_7nt_mkv2 6.1 1 19824 14 7.057875e-04 2.318281e-04 4.60 3.108309e-04 3.574555e-02 1.45 102 oligos_7nt_mkv2 6.2 1 19825 13 6.553741e-04 2.206998e-04 4.38 6.274980e-04 7.216227e-02 1.14 103 oligos_7nt_mkv2 6.3 1 19826 12 6.049607e-04 2.075939e-04 4.12 1.164981e-03 1.339728e-01 0.87 104 oligos_7nt_mkv2 6.7 1 19827 11 5.545473e-04 1.596900e-04 3.17 4.569467e-04 5.254887e-02 1.28 105 oligos_7nt_mkv2 7.1 1 19828 10 5.041339e-04 1.152416e-04 2.29 1.368999e-04 1.574348e-02 1.80 106 oligos_7nt_mkv2 7.2 1 19829 9 4.537205e-04 1.053486e-04 2.09 3.252916e-04 3.740853e-02 1.43 107 oligos_7nt_mkv2 7.7 1 19830 8 4.033071e-04 6.108729e-05 1.21 3.952234e-05 4.545069e-03 2.34 108 oligos_7nt_mkv2 8.0 1 19831 7 3.528937e-04 4.241181e-05 0.84 2.844836e-05 3.271561e-03 2.49 109 oligos_7nt_mkv2 9.9 1 19832 6 3.024803e-04 6.850059e-06 0.14 7.775450e-09 8.941768e-07 6.05 110 oligos_7nt_mkv2 10.1 1 19833 5 2.520669e-04 6.265419e-06 0.12 2.227001e-07 2.561052e-05 4.59 111 oligos_7nt_mkv2 11.0 1 19834 4 2.016536e-04 2.536219e-06 0.05 2.563066e-07 2.947526e-05 4.53 112 oligos_7nt_mkv2 11.4 2 19836 2 1.008268e-04 1.297803e-06 0.03 3.257083e-04 3.745646e-02 1.43 113 oligos_7nt_mkv2 11.6 1 19837 1 5.041339e-05 8.859028e-07 0.02 1.741928e-02 2.003217e+00 -0.30 114 oligos_7nt_mkv2 12.1 1 19838 0 0.000000e+00 2.321070e-07 0.00 1.000000e+00 1.150000e+02 -2.06 115 ; Number of sequences scanned 109 ; Sum of sequence lengths 11009 ; N residues 0 ; Matches per matrix ; matrix name matches scored ; 1 oligos_7nt_mkv2 19836 19836 ; TOTAL 19836 19836 ; Host name biow ; Job started 2014-09-06.012146 ; Job done 2014-09-06.012147 ; Seconds 0.74 ; user 0.74 ; system 0.03 ; cuser 0.23 ; csystem 0.02