/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_vs_db/peak-motifs_motifs_vs_db_footprintDB.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_vs_db/peak-motifs_motifs_vs_db_footprintDB.tab
 Program version       	1.118
 Input files
	file2 	$RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf
	file1 	$RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_vs_db/peak-motifs_motifs_vs_db_footprintDB_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_vs_db/peak-motifs_motifs_vs_db_footprintDB.tab
	html_index   	$RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_vs_db/peak-motifs_motifs_vs_db_footprintDB_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_vs_db/peak-motifs_motifs_vs_db_footprintDB_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_vs_db/peak-motifs_motifs_vs_db_footprintDB.html
	prefix       	$RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_vs_db/peak-motifs_motifs_vs_db_footprintDB
 Matrices
	file1	6 matrices	$RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	11	5	taGATCAATrw
		file1	2	11	7	TsAGGAGTAhw
		file1	3	12	3	rwAGAGGGAGws
		file1	4	20	28	wwwTTGATctadATCAAwww
		file1	5	20	28	wwwTTGAystagATCAAtww
		file1	6	11	11	ymGATCAAAtw
	file2	4196 matrices	$RSAT/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf
		file2		1		17		100		yyaymCATCAAwmwwmm
		file2		2		10		7		ACCGGAAGws
		file2		3		16		100		wwtksgTAATTACsdy
		file2		4		17		100		twrttaATTAwtaawwr
		file2		5		18		100		TCCGynnnnnnnnnCGGA
		file2		6		20		100		gwrastTTCCGGAAyrywrr
		file2		7		20		100		yrawygGyGCCGyrysackh
		file2		8		21		100		wmrmraAtmGAAGaaawawww
		file2		9		20		100		rkmkkakCACGTGmyyrvwy
		file2		10		6		1		CTATCA
		file2		11		18		66		hTTwCCwWAwwdGGhAat
		...	4186 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	logoDP       	Dot product between the logo matrices.
	8	NIcor        	Normalized Pearson correlation between the information content matrices. NIcor = Icor * Wr
	9	NSW          	Normalized Sandelin-Wasserman similarity. NSW = SW/w
	10	SSD          	sum of squared distance.
	11	NsEucl       	relative Euclidian similarity. NsEucl = (max(dEucl) - dEucl)/max(dEucl)
	12	w1           	Width of the first matrix
	13	w2           	Width of the second matrix
	14	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	15	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	16	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	17	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	18	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	19	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	20	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
	21	consensus1   	IUPAC consensus of matrix 1 (dots represent non-aligned columns)
	22	consensus2   	IUPAC consensus of matrix 2 (dots represent non-aligned columns)
	23	rcor         	Matching rank for cor
	24	rNcor        	Matching rank for Ncor
	25	rlogoDP      	Matching rank for logoDP
	26	rNIcor       	Matching rank for NIcor
	27	rNsEucl      	Matching rank for NsEucl
	28	rSSD         	Matching rank for SSD
	29	rNSW         	Matching rank for NSW
	30	rank_mean    	Mean of the matching ranks on all selected metrics
	31	match_rank   	Rank of the match (sorting by rank_mean)
id1 id2 name1 name2 cor Ncor logoDP NIcor NSW SSD NsEucl w1 w2 w W Wr wr1 wr2 strand offset consensus1 consensus2 rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank
dyads_m1 3061_FNR_RegulonDB_7.5_ dyads_m1 3061_FNR_RegulonDB_7.5_ 0.948 0.663 6.730 0.655 0.971 0.8223 0.95420 20 14 14 20 0.7000 0.7000 1.0000 D 3 ...TTGATctadATCAA... tTGaTywayATCAA 2 7 39 5 1 9 2 9.2857 1
dyads_m2 3061_FNR_RegulonDB_7.5_ dyads_m2 3061_FNR_RegulonDB_7.5_ 0.915 0.641 6.428 0.637 0.962 1.0598 0.94800 20 14 14 20 0.7000 0.7000 1.0000 R 3 ...TTGAystagATCAA... TTGATRTWRATCAA 10 9 41 6 2 14 5 12.4286 2
oligos_6nt_mkv2 2784_PF0097.1_JASPAR_CORE_2009_ oligos_6nt_mkv2 2784_PF0097.1_JASPAR_CORE_2009_ 0.916 0.666 7.697 0.346 0.945 0.8854 0.91683 11 8 8 11 0.7273 0.7273 1.0000 R 2 ..GATCAATr. GATRAATR 9 6 27 59 17 11 9 19.7143 3
oligos_6nt_mkv2 7424_HBP1_f1_HOCOMOCO_v9_ oligos_6nt_mkv2 7424_HBP1_f1_HOCOMOCO_v9_ 0.939 0.433 6.895 0.434 0.967 0.4000 0.92546 11 8 6 13 0.4615 0.5455 0.7500 D 5 .....CAATrw CAATgr.. 4 56 34 31 10 2 4 20.1429 4
oligos_6nt_mkv2 6530_3a01_E_3D-footprint_20130124_ oligos_6nt_mkv2 6530_3a01_E_3D-footprint_20130124_ 0.896 0.489 7.801 0.504 0.941 0.7118 0.90057 11 6 6 11 0.5455 0.5455 1.0000 D 5 .....CAATrw CAATtA 11 36 23 21 37 5 12 20.7143 5
oligos_6nt_mkv2 5766_SOX18_full_2_HumanTF_1.0_ oligos_6nt_mkv2 5766_SOX18_full_2_HumanTF_1.0_ 0.921 0.410 10.470 0.424 0.954 0.7428 0.92382 11 15 8 18 0.4444 0.7273 0.5333 D 3 ...ATCAATrw ATCAATwk....... 7 81 3 40 13 8 8 22.8571 6
oligos_6nt_mkv2 5763_SOX15_full_2_HumanTF_1.0_ oligos_6nt_mkv2 5763_SOX15_full_2_HumanTF_1.0_ 0.925 0.411 10.378 0.414 0.954 0.7301 0.92448 11 15 8 18 0.4444 0.7273 0.5333 D 3 ...ATCAATrw ATCAATAm....... 6 78 4 49 12 7 7 23.2857 7
oligos_6nt_mkv2 1999_PB0144.1_JASPAR_CORE_2009_ oligos_6nt_mkv2 1999_PB0144.1_JASPAR_CORE_2009_ 0.818 0.562 7.711 0.585 0.914 1.8973 0.91146 11 16 11 16 0.6875 1.0000 0.6875 D -1 taGATCAATrw .wrsATCAATCr.... 32 15 26 10 20 42 31 25.1429 8
dyads_m3 2526_MA0151.1_JASPAR_CORE_2009_ dyads_m3 2526_MA0151.1_JASPAR_CORE_2009_ 0.887 0.484 8.694 0.469 0.920 0.9602 0.88452 11 6 6 11 0.5455 0.5455 1.0000 D 3 ...ATCAAA.. ATyAAA 13 39 15 26 54 12 25 26.2857 9
oligos_6nt_mkv2 5829_Sox3_DBD_2_HumanTF_1.0_ oligos_6nt_mkv2 5829_Sox3_DBD_2_HumanTF_1.0_ 0.884 0.419 10.178 0.419 0.931 1.2360 0.91265 11 17 9 19 0.4737 0.8182 0.5294 D 2 ..GATCAATrw sATCAATGt........ 15 67 7 42 19 20 15 26.4286 10
oligos_6nt_mkv2 2042_PB0188.1_JASPAR_CORE_2009_ oligos_6nt_mkv2 2042_PB0188.1_JASPAR_CORE_2009_ 0.814 0.559 7.045 0.586 0.913 1.9228 0.91086 11 16 11 16 0.6875 1.0000 0.6875 D -1 taGATCAATrw .drsWTCAATCr.... 33 16 33 9 21 43 32 26.7143 11
oligos_6nt_mkv2 5774_SOX2_DBD_3_HumanTF_1.0_ oligos_6nt_mkv2 5774_SOX2_DBD_3_HumanTF_1.0_ 0.886 0.420 10.258 0.408 0.933 1.2123 0.91350 11 17 9 19 0.4737 0.8182 0.5294 D 2 ..GATCAATrw rATCAATGk........ 14 65 6 52 18 18 14 26.7143 12
dyads_m3 6733_4euw_A_3D-footprint_20130124_ dyads_m3 6733_4euw_A_3D-footprint_20130124_ 0.883 0.481 7.280 0.491 0.927 0.8773 0.88961 11 6 6 11 0.5455 0.5455 1.0000 D 4 ....TCAAAt. TcAAAg 16 42 31 23 51 10 18 27.2857 13
dyads_m3 5048_ZmHOX2a_2__Athamap_20091028_ dyads_m3 5048_ZmHOX2a_2__Athamap_20091028_ 0.940 0.598 0.123 -0.161 0.967 0.4560 0.93179 11 7 7 11 0.6364 0.6364 1.0000 R 0 ymGATCA.... CMGATCA 3 10 86 84 3 3 3 27.4286 14
oligos_6nt_mkv2 5048_ZmHOX2a_2__Athamap_20091028_ oligos_6nt_mkv2 5048_ZmHOX2a_2__Athamap_20091028_ 0.926 0.589 0.139 -0.157 0.961 0.5430 0.92556 11 7 7 11 0.6364 0.6364 1.0000 R 0 taGATCA.... CMGATCA 5 11 83 82 9 4 6 28.5714 15
dyads_m3 2653_MA0434.1_JASPAR_CORE_2009_ dyads_m3 2653_MA0434.1_JASPAR_CORE_2009_ 0.862 0.464 6.479 0.443 0.928 1.0135 0.89830 11 9 7 13 0.5385 0.6364 0.7778 D -2 ymGATCA.... ..ymrATCm 21 47 40 27 40 13 17 29.2857 16
dyads_m2 1999_PB0144.1_JASPAR_CORE_2009_ dyads_m2 1999_PB0144.1_JASPAR_CORE_2009_ 0.839 0.420 5.565 0.431 0.944 1.3434 0.93170 20 16 12 24 0.5000 0.6000 0.7500 D 8 ........stagATCAAtww swrsATCAATCr.... 26 66 49 32 5 24 11 30.4286 17
oligos_6nt_mkv2 5197_CUX1_DBD_3_HumanTF_1.0_ oligos_6nt_mkv2 5197_CUX1_DBD_3_HumanTF_1.0_ 0.792 0.720 9.238 0.710 0.893 2.1482 0.89636 11 10 10 11 0.9091 0.9091 1.0000 D 1 .aGATCAATrw TrATCrATam 47 1 11 3 44 63 52 31.5714 18
dyads_m2 2042_PB0188.1_JASPAR_CORE_2009_ dyads_m2 2042_PB0188.1_JASPAR_CORE_2009_ 0.832 0.416 5.073 0.430 0.944 1.3416 0.93175 20 16 12 24 0.5000 0.6000 0.7500 D 8 ........stagATCAAtww sdrsWTCAATCr.... 27 72 50 35 4 23 10 31.5714 19
dyads_m3 1939_PB0082.1_JASPAR_CORE_2009_ dyads_m3 1939_PB0082.1_JASPAR_CORE_2009_ 0.799 0.517 8.434 0.552 0.903 2.1345 0.90608 11 17 11 17 0.6471 1.0000 0.6471 D -2 ymGATCAAAtw ..wasATCAAAGg.... 43 27 17 13 24 62 37 31.8571 20
oligos_6nt_mkv2 2653_MA0434.1_JASPAR_CORE_2009_ oligos_6nt_mkv2 2653_MA0434.1_JASPAR_CORE_2009_ 0.845 0.455 6.405 0.438 0.921 1.1002 0.89404 11 9 7 13 0.5385 0.6364 0.7778 D -2 taGATCA.... ..ymrATCm 25 48 42 30 45 16 23 32.7143 21
oligos_6nt_mkv2 5776_SOX2_full_2_HumanTF_1.0_ oligos_6nt_mkv2 5776_SOX2_full_2_HumanTF_1.0_ 0.870 0.412 9.016 0.406 0.922 1.3993 0.90706 11 17 9 19 0.4737 0.8182 0.5294 R 2 ..GATCAATrw KATCAATGK........ 17 77 12 53 22 30 22 33.2857 22
dyads_m3 7482_LEF1_f1_HOCOMOCO_v9_ dyads_m3 7482_LEF1_f1_HOCOMOCO_v9_ 0.917 0.500 2.545 0.028 0.939 0.7262 0.89957 11 6 6 11 0.5455 0.5455 1.0000 R 3 ...ATCAAA.. WWCAAA 8 34 67 68 38 6 13 33.4286 23
dyads_m3 6387_2a07_K_3D-footprint_20130124_ dyads_m3 6387_2a07_K_3D-footprint_20130124_ 0.958 0.436 0.093 -0.128 0.972 0.2820 0.92490 11 5 5 11 0.4545 0.4545 1.0000 R 5 .....CAAAt. CAAAT 1 55 88 80 11 1 1 33.8571 24
dyads_m3 3755_UP00058_UniPROBE_20120919_ dyads_m3 3755_UP00058_UniPROBE_20120919_ 0.796 0.515 8.422 0.550 0.902 2.1652 0.90541 11 17 11 17 0.6471 1.0000 0.6471 D -2 ymGATCAAAtw ..wwsATCAAAGg.... 44 28 18 14 28 66 41 34.1429 25
dyads_m3 1940_PB0083.1_JASPAR_CORE_2009_ dyads_m3 1940_PB0083.1_JASPAR_CORE_2009_ 0.795 0.515 7.733 0.554 0.902 2.1605 0.90551 11 17 11 17 0.6471 1.0000 0.6471 D -2 ymGATCAAAtw ..wasWTCAAAGg.... 45 29 24 11 26 65 40 34.2857 26
dyads_m3 3751_UP00054_UniPROBE_20120919_ dyads_m3 3751_UP00054_UniPROBE_20120919_ 0.795 0.514 7.843 0.554 0.901 2.1670 0.90537 11 17 11 17 0.6471 1.0000 0.6471 D -2 ymGATCAAAtw ..wasWTCAAAGg.... 46 30 22 12 29 67 42 35.4286 27
dyads_m3 1795_MA0237.1_JASPAR_CORE_2009_ dyads_m3 1795_MA0237.1_JASPAR_CORE_2009_ 0.888 0.646 2.118 0.068 0.915 1.3602 0.89691 11 8 8 11 0.7273 0.7273 1.0000 R 2 ..GATCAAAt. KWTCAAAR 12 8 68 66 43 26 30 36.1429 28
dyads_m3 2329_CN0166.1_JASPAR_CORE_2009_ dyads_m3 2329_CN0166.1_JASPAR_CORE_2009_ 0.864 0.407 8.500 0.387 0.917 1.3229 0.89834 11 14 8 17 0.4706 0.7273 0.5714 D -6 ymGATCAA... ......GAGATCAA 18 84 16 56 39 22 29 37.7143 29
dyads_m2 1000_UP00185_UniPROBE_20120919_ dyads_m2 1000_UP00185_UniPROBE_20120919_ 0.765 0.466 5.022 0.471 0.925 2.1106 0.92662 20 17 14 23 0.6087 0.7000 0.8235 D 6 ......AystagATCAAtww yyaymCATCAAwmw... 65 44 51 24 6 57 19 38.0000 30
dyads_m2 7440_HNF6_f1_HOCOMOCO_v9_ dyads_m2 7440_HNF6_f1_HOCOMOCO_v9_ 0.805 0.524 0.878 -0.127 0.930 1.8206 0.92661 20 13 13 20 0.6500 0.6500 1.0000 R 7 .......ystagATCAAtww WHWAARTCAATAW 35 20 75 79 7 39 16 38.7143 31
oligos_6nt_mkv2 5199_CUX2_DBD_2_HumanTF_1.0_ oligos_6nt_mkv2 5199_CUX2_DBD_2_HumanTF_1.0_ 0.768 0.698 8.936 0.681 0.880 2.4073 0.89029 11 10 10 11 0.9091 0.9091 1.0000 D 1 .aGATCAATrw TrATCRATaa 61 3 13 4 50 80 61 38.8571 32
dyads_m3 5494_LEF1_DBD_HumanTF_1.0_ dyads_m3 5494_LEF1_DBD_HumanTF_1.0_ 0.777 0.570 11.529 0.608 0.876 2.7363 0.89367 11 15 11 15 0.7333 1.0000 0.7333 D -1 ymGATCAAAtw .AAGATCAAAGg... 55 14 1 7 47 84 65 39.0000 33
dyads_m3 5900_Tcf7_DBD_HumanTF_1.0_ dyads_m3 5900_Tcf7_DBD_HumanTF_1.0_ 0.766 0.702 11.009 0.742 0.870 2.8493 0.89149 11 12 11 12 0.9167 1.0000 0.9167 D -1 ymGATCAAAtw .AASATCAAAGg 64 2 2 1 49 86 71 39.2857 34
oligos_7nt_mkv2 5131_YufM_DBTBS_1.0_ oligos_7nt_mkv2 5131_YufM_DBTBS_1.0_ 0.786 0.572 7.999 0.589 0.872 2.0454 0.87359 11 8 8 11 0.7273 0.7273 1.0000 D 2 ..AGGAGTAh. ArGrGdws 49 13 21 8 66 51 68 39.4286 35
dyads_m2 2984_PH0134.1_JASPAR_CORE_2009_ dyads_m2 2984_PH0134.1_JASPAR_CORE_2009_ 0.764 0.465 5.021 0.471 0.924 2.1190 0.92648 20 17 14 23 0.6087 0.7000 0.8235 D 6 ......AystagATCAAtww yyaymCATCAAwmw... 69 45 52 25 8 58 20 39.5714 36
dyads_m3 3061_FNR_RegulonDB_7.5_ dyads_m3 3061_FNR_RegulonDB_7.5_ 0.863 0.406 6.313 0.409 0.924 1.2158 0.90254 11 14 8 17 0.4706 0.7273 0.5714 D -6 ymGATCAA... ......wayATCAA 20 86 46 51 35 19 21 39.7143 37
oligos_6nt_mkv2 5195_CUX1_DBD_1_HumanTF_1.0_ oligos_6nt_mkv2 5195_CUX1_DBD_1_HumanTF_1.0_ 0.854 0.405 7.521 0.397 0.920 1.4468 0.90550 11 17 9 19 0.4737 0.8182 0.5294 D -8 taGATCAAT.. ........strATCrAT 23 87 29 55 27 32 26 39.8571 38
oligos_8nt_mkv2 6513_2v2t_A_3D-footprint_20130124_ oligos_8nt_mkv2 6513_2v2t_A_3D-footprint_20130124_ 0.860 0.430 4.825 0.409 0.908 1.1026 0.87625 12 6 6 12 0.5000 0.5000 1.0000 D 5 .....GGGAGw. GGgAnT 22 57 53 50 63 17 35 42.4286 39
oligos_6nt_mkv2 1000_UP00185_UniPROBE_20120919_ oligos_6nt_mkv2 1000_UP00185_UniPROBE_20120919_ 0.780 0.505 6.380 0.516 0.899 2.2270 0.90407 11 17 11 17 0.6471 1.0000 0.6471 D -3 taGATCAATrw ...ymCATCAAwmw... 52 32 43 19 33 72 48 42.7143 40
oligos_6nt_mkv2 2984_PH0134.1_JASPAR_CORE_2009_ oligos_6nt_mkv2 2984_PH0134.1_JASPAR_CORE_2009_ 0.780 0.505 6.380 0.516 0.899 2.2270 0.90407 11 17 11 17 0.6471 1.0000 0.6471 D -3 taGATCAATrw ...ymCATCAAwmw... 52 32 43 19 33 72 48 42.7143 41
oligos_6nt_mkv2 2329_CN0166.1_JASPAR_CORE_2009_ oligos_6nt_mkv2 2329_CN0166.1_JASPAR_CORE_2009_ 0.850 0.400 8.262 0.376 0.910 1.4456 0.89373 11 14 8 17 0.4706 0.7273 0.5714 D -6 taGATCAA... ......GAGATCAA 24 88 19 58 46 31 33 42.7143 42
dyads_m3 5863_TCF7L1_full_HumanTF_1.0_ dyads_m3 5863_TCF7L1_full_HumanTF_1.0_ 0.750 0.688 10.294 0.720 0.863 3.0152 0.88838 11 12 11 12 0.9167 1.0000 0.9167 D -1 ymGATCAAAtw .AAGATCAAAGG 87 4 5 2 53 88 72 44.4286 43
dyads_m3 3780_UP00083_UniPROBE_20120919_ dyads_m3 3780_UP00083_UniPROBE_20120919_ 0.803 0.520 3.634 0.097 0.902 2.1520 0.90570 11 17 11 17 0.6471 1.0000 0.6471 R -2 ymGATCAAAtw ..WASATCAAAGG.... 39 23 64 63 25 64 38 45.1429 44
oligos_6nt_mkv2 7440_HNF6_f1_HOCOMOCO_v9_ oligos_6nt_mkv2 7440_HNF6_f1_HOCOMOCO_v9_ 0.805 0.681 0.872 -0.173 0.905 2.0928 0.90701 11 13 11 13 0.8462 1.0000 0.8462 R -2 taGATCAATrw ..WAARTCAATAW 38 5 76 86 23 55 36 45.5714 45
dyads_m1 7440_HNF6_f1_HOCOMOCO_v9_ dyads_m1 7440_HNF6_f1_HOCOMOCO_v9_ 0.780 0.507 1.034 -0.102 0.920 2.0804 0.92155 20 13 13 20 0.6500 0.6500 1.0000 R 7 .......TctadATCAAwww WHWAARTCAATAW 51 31 72 75 14 54 24 45.8571 46
oligos_6nt_mkv2 6138_1j5n_A_3D-footprint_20130124_ oligos_6nt_mkv2 6138_1j5n_A_3D-footprint_20130124_ 0.773 0.492 9.628 0.518 0.854 2.0478 0.85545 11 7 7 11 0.6364 0.6364 1.0000 D 3 ...ATCAATr. AACAATc 58 35 9 18 77 52 75 46.2857 47
dyads_m3 3764_UP00067_UniPROBE_20120919_ dyads_m3 3764_UP00067_UniPROBE_20120919_ 0.805 0.521 3.757 0.094 0.901 2.1757 0.90518 11 17 11 17 0.6471 1.0000 0.6471 R -2 ymGATCAAAtw ..WASATCAAAGG.... 36 21 63 64 31 69 45 47.0000 48
oligos_6nt_mkv2 7627_SOX10_si_HOCOMOCO_v9_ oligos_6nt_mkv2 7627_SOX10_si_HOCOMOCO_v9_ 0.801 0.437 5.845 0.418 0.894 1.2695 0.86722 11 6 6 11 0.5455 0.5455 1.0000 D 5 .....CAATrw CAAwGr 42 54 48 43 70 21 51 47.0000 49
oligos_6nt_mkv2 3061_FNR_RegulonDB_7.5_ oligos_6nt_mkv2 3061_FNR_RegulonDB_7.5_ 0.863 0.406 6.281 0.405 0.902 1.5678 0.88933 11 14 8 17 0.4706 0.7273 0.5714 R -6 taGATCAA... ......TWRATCAA 19 85 47 54 52 35 39 47.2857 50
oligos_6nt_mkv2 3788_UP00091_UniPROBE_20120919_ oligos_6nt_mkv2 3788_UP00091_UniPROBE_20120919_ 0.753 0.517 7.714 0.528 0.884 2.5561 0.89723 11 16 11 16 0.6875 1.0000 0.6875 D -2 taGATCAATrw ..drgAACAATwa... 82 25 25 16 42 83 60 47.5714 51
dyads_m3 2684_PB0084.1_JASPAR_CORE_2009_ dyads_m3 2684_PB0084.1_JASPAR_CORE_2009_ 0.801 0.518 3.622 0.097 0.901 2.1747 0.90520 11 17 11 17 0.6471 1.0000 0.6471 R -2 ymGATCAAAtw ..WASATCAAAGG.... 41 24 65 62 30 68 44 47.7143 52
dyads_m3 1904_PB0040.1_JASPAR_CORE_2009_ dyads_m3 1904_PB0040.1_JASPAR_CORE_2009_ 0.805 0.521 3.773 0.092 0.901 2.1768 0.90516 11 17 11 17 0.6471 1.0000 0.6471 R -2 ymGATCAAAtw ..WASATCAAAGG.... 37 22 62 65 32 70 46 47.7143 53
oligos_6nt_mkv2 2682_PB0072.1_JASPAR_CORE_2009_ oligos_6nt_mkv2 2682_PB0072.1_JASPAR_CORE_2009_ 0.753 0.517 7.665 0.527 0.884 2.5547 0.89725 11 16 11 16 0.6875 1.0000 0.6875 D -2 taGATCAATrw ..drgAACAATwa... 83 26 28 17 41 82 59 48.0000 54
oligos_7nt_mkv2 5047_ZmHOX2a_1__Athamap_20091028_ oligos_7nt_mkv2 5047_ZmHOX2a_1__Athamap_20091028_ 0.825 0.525 0.129 -0.139 0.901 1.3824 0.88123 11 7 7 11 0.6364 0.6364 1.0000 R 0 TsAGGAG.... TTAGGAY 31 19 84 81 57 28 43 49.0000 55
oligos_6nt_mkv2 6753_6gat_A_3D-footprint_20130124_ oligos_6nt_mkv2 6753_6gat_A_3D-footprint_20130124_ 0.803 0.438 4.707 0.416 0.888 1.3459 0.86328 11 6 6 11 0.5455 0.5455 1.0000 D 1 .aGATCA.... CnATCA 40 53 58 44 72 25 54 49.4286 56
dyads_m3 6753_6gat_A_3D-footprint_20130124_ dyads_m3 6753_6gat_A_3D-footprint_20130124_ 0.805 0.439 4.748 0.415 0.885 1.3769 0.86171 11 6 6 11 0.5455 0.5455 1.0000 D 1 .mGATCA.... CnATCA 34 52 57 48 74 27 56 49.7143 57
oligos_8nt_mkv2 6322_1svc_P_3D-footprint_20130124_ oligos_8nt_mkv2 6322_1svc_P_3D-footprint_20130124_ 0.829 0.483 0.244 -0.041 0.901 1.3867 0.88105 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....GGGAGws GGGANNC 28 40 79 71 58 29 47 50.2857 58
dyads_m2 1924_PB0063.1_JASPAR_CORE_2009_ dyads_m2 1924_PB0063.1_JASPAR_CORE_2009_ 0.750 0.424 4.768 0.416 0.918 2.1235 0.92074 20 16 13 23 0.5652 0.6500 0.8125 D 7 .......ystagATCAAtww wtwrgAACAATww... 88 64 56 45 15 59 27 50.5714 59
dyads_m2 3793_UP00096_UniPROBE_20120919_ dyads_m2 3793_UP00096_UniPROBE_20120919_ 0.750 0.424 4.822 0.416 0.918 2.1307 0.92060 20 16 13 23 0.5652 0.6500 0.8125 D 7 .......ystagATCAAtww wtwrgAACAATww... 86 63 54 46 16 61 28 50.5714 60
oligos_6nt_mkv2 7634_SOX5_f1_HOCOMOCO_v9_ oligos_6nt_mkv2 7634_SOX5_f1_HOCOMOCO_v9_ 0.767 0.488 6.350 0.491 0.857 2.0035 0.85702 11 7 7 11 0.6364 0.6364 1.0000 D 3 ...ATCAATr. AACAATr 62 37 45 22 76 47 74 51.8571 61
oligos_6nt_mkv2 1741_MA0182.1_JASPAR_CORE_2009_ oligos_6nt_mkv2 1741_MA0182.1_JASPAR_CORE_2009_ 0.826 0.413 0.779 -0.103 0.909 1.0956 0.87665 11 7 6 12 0.5000 0.5455 0.8571 R 5 .....CAATrw YAATWA. 30 76 78 76 62 15 34 53.0000 62
oligos_7nt_mkv2 2780_PF0093.1_JASPAR_CORE_2009_ oligos_7nt_mkv2 2780_PF0093.1_JASPAR_CORE_2009_ 0.778 0.424 9.609 0.424 0.833 2.0000 0.83333 11 6 6 11 0.5455 0.5455 1.0000 D 3 ...GGAGTA.. GGATTA 54 62 10 39 85 46 85 54.4286 63
oligos_7nt_mkv2 3094_NarL_RegulonDB_7.5_ oligos_7nt_mkv2 3094_NarL_RegulonDB_7.5_ 0.764 0.555 4.299 0.537 0.857 2.2886 0.86628 11 8 8 11 0.7273 0.7273 1.0000 D 1 .sAGGAGTA.. wakrrkTA 71 18 60 15 71 76 73 54.8571 64
dyads_m3 7299_ARI3A_do_HOCOMOCO_v9_ dyads_m3 7299_ARI3A_do_HOCOMOCO_v9_ 0.781 0.409 4.796 0.423 0.895 2.3089 0.90232 11 21 11 21 0.5238 1.0000 0.5238 D -7 ymGATCAAAtw .......rrwATcWAAwt... 50 82 55 41 36 77 50 55.8571 65
oligos_6nt_mkv2 2872_PH0014.1_JASPAR_CORE_2009_ oligos_6nt_mkv2 2872_PH0014.1_JASPAR_CORE_2009_ 0.761 0.428 6.819 0.429 0.876 2.2370 0.88249 11 14 9 16 0.5625 0.8182 0.6429 D -5 taGATCAAT.. .....ssmATCAaw 73 58 37 37 55 74 63 56.7143 66
oligos_6nt_mkv2 3893_UP00198_UniPROBE_20120919_ oligos_6nt_mkv2 3893_UP00198_UniPROBE_20120919_ 0.761 0.428 6.819 0.429 0.876 2.2370 0.88249 11 14 9 16 0.5625 0.8182 0.6429 D -5 taGATCAAT.. .....ssmATCAaw 73 58 37 37 55 74 63 56.7143 67
oligos_7nt_mkv2 3095_NarP_RegulonDB_7.5_ oligos_7nt_mkv2 3095_NarP_RegulonDB_7.5_ 0.789 0.574 0.939 -0.161 0.872 2.0441 0.87363 11 8 8 11 0.7273 0.7273 1.0000 R 2 ..AGGAGTAh. AGRRGTAK 48 12 74 83 65 50 67 57.0000 68
dyads_m3 7604_RARG_f1_HOCOMOCO_v9_ dyads_m3 7604_RARG_f1_HOCOMOCO_v9_ 0.759 0.414 7.379 0.439 0.848 1.8216 0.84094 11 6 6 11 0.5455 0.5455 1.0000 D 1 .mGATCA.... AGKTCA 75 74 30 29 81 40 79 58.2857 69
dyads_m3 2619_MA0389.1_JASPAR_CORE_2009_ dyads_m3 2619_MA0389.1_JASPAR_CORE_2009_ 0.776 0.452 1.017 0.016 0.884 1.6212 0.87138 11 8 7 12 0.5833 0.6364 0.8750 R -1 ymGATCA.... .KAGATCT 57 49 73 69 69 38 58 59.0000 70
dyads_m3 3893_UP00198_UniPROBE_20120919_ dyads_m3 3893_UP00198_UniPROBE_20120919_ 0.758 0.426 6.826 0.431 0.871 2.3132 0.88050 11 14 9 16 0.5625 0.8182 0.6429 D -5 ymGATCAAA.. .....ssmATCAaw 79 60 35 33 59 78 69 59.0000 71
dyads_m3 2872_PH0014.1_JASPAR_CORE_2009_ dyads_m3 2872_PH0014.1_JASPAR_CORE_2009_ 0.758 0.426 6.826 0.431 0.871 2.3132 0.88050 11 14 9 16 0.5625 0.8182 0.6429 D -5 ymGATCAAA.. .....ssmATCAaw 79 60 35 33 59 78 69 59.0000 72
oligos_6nt_mkv2 2619_MA0389.1_JASPAR_CORE_2009_ oligos_6nt_mkv2 2619_MA0389.1_JASPAR_CORE_2009_ 0.771 0.450 0.785 -0.004 0.885 1.6162 0.87158 11 8 7 12 0.5833 0.6364 0.8750 R -1 taGATCA.... .KAGATCT 60 51 77 70 68 37 57 60.0000 73
dyads_m3 2760_PF0073.1_JASPAR_CORE_2009_ dyads_m3 2760_PF0073.1_JASPAR_CORE_2009_ 0.828 0.452 0.121 -0.177 0.877 1.4711 0.85706 11 6 6 11 0.5455 0.5455 1.0000 R 4 ....TCAAAt. TCAAAG 29 50 87 87 75 33 62 60.4286 74
dyads_m3 7300_ARI3A_f1_HOCOMOCO_v9_ dyads_m3 7300_ARI3A_f1_HOCOMOCO_v9_ 0.764 0.417 8.757 0.415 0.829 2.0579 0.83094 11 6 6 11 0.5455 0.5455 1.0000 D 3 ...ATCAAA.. ATTAAA 67 70 14 47 88 53 88 61.0000 75
oligos_8nt_mkv2 2711_PF0024.1_JASPAR_CORE_2009_ oligos_8nt_mkv2 2711_PF0024.1_JASPAR_CORE_2009_ 0.758 0.408 9.734 0.441 0.841 2.2222 0.84942 12 8 7 13 0.5385 0.5833 0.8750 D 5 .....GGGAGws GGGAGGr. 77 83 8 28 80 71 82 61.2857 76
oligos_6nt_mkv2 7604_RARG_f1_HOCOMOCO_v9_ oligos_6nt_mkv2 7604_RARG_f1_HOCOMOCO_v9_ 0.752 0.410 7.248 0.429 0.846 1.8446 0.83994 11 6 6 11 0.5455 0.5455 1.0000 D 1 .aGATCA.... AGKTCA 84 79 32 36 82 41 81 62.1429 77
oligos_6nt_mkv2 2559_MA0301.1_JASPAR_CORE_2009_ oligos_6nt_mkv2 2559_MA0301.1_JASPAR_CORE_2009_ 0.776 0.418 0.126 -0.106 0.890 1.5448 0.87445 11 9 7 13 0.5385 0.6364 0.7778 R -2 taGATCA.... ..TRGATCT 56 69 85 77 64 34 53 62.5714 78
dyads_m3 2255_CN0092.1_JASPAR_CORE_2009_ dyads_m3 2255_CN0092.1_JASPAR_CORE_2009_ 0.761 0.465 4.160 0.101 0.875 2.7440 0.89352 11 18 11 18 0.6111 1.0000 0.6111 R -5 ymGATCAAAtw .....CAAATCAAATT.. 72 46 61 61 48 85 66 62.7143 79
oligos_6nt_mkv2 2526_MA0151.1_JASPAR_CORE_2009_ oligos_6nt_mkv2 2526_MA0151.1_JASPAR_CORE_2009_ 0.758 0.414 8.186 0.386 0.834 1.9973 0.83345 11 6 6 11 0.5455 0.5455 1.0000 D 3 ...ATCAAT.. ATyAAA 78 75 20 57 84 45 84 63.2857 80
dyads_m3 2559_MA0301.1_JASPAR_CORE_2009_ dyads_m3 2559_MA0301.1_JASPAR_CORE_2009_ 0.773 0.416 0.195 -0.115 0.885 1.6057 0.87200 11 9 7 13 0.5385 0.6364 0.7778 R -2 ymGATCA.... ..TRGATCT 59 73 81 78 67 36 55 64.1429 81
dyads_m3 1838_MA0326.1_JASPAR_CORE_2009_ dyads_m3 1838_MA0326.1_JASPAR_CORE_2009_ 0.764 0.555 2.550 -0.043 0.847 2.4465 0.86175 11 8 8 11 0.7273 0.7273 1.0000 R 1 .mGATCAAA.. YGAGCAAA 70 17 66 72 73 81 80 65.5714 82
dyads_m3 2350_CN0187.1_JASPAR_CORE_2009_ dyads_m3 2350_CN0187.1_JASPAR_CORE_2009_ 0.755 0.472 4.329 0.067 0.854 2.9292 0.87898 11 15 10 16 0.6250 0.9091 0.6667 R -5 ymGATCAAAt. .....AAGAWCAAAG 81 43 59 67 61 87 76 67.7143 83
dyads_m3 1793_MA0235.1_JASPAR_CORE_2009_ dyads_m3 1793_MA0235.1_JASPAR_CORE_2009_ 0.764 0.486 0.204 -0.181 0.850 2.1064 0.85339 11 7 7 11 0.6364 0.6364 1.0000 R 1 .mGATCAA... HAATCAA 66 38 80 88 78 56 77 69.0000 84
oligos_7nt_mkv2 1771_MA0212.1_JASPAR_CORE_2009_ oligos_7nt_mkv2 1771_MA0212.1_JASPAR_CORE_2009_ 0.767 0.418 1.998 -0.055 0.831 2.0248 0.83230 11 6 6 11 0.5455 0.5455 1.0000 R 3 ...GGAGTA.. GGATTA 63 68 70 74 86 48 86 70.7143 85
oligos_6nt_mkv2 1793_MA0235.1_JASPAR_CORE_2009_ oligos_6nt_mkv2 1793_MA0235.1_JASPAR_CORE_2009_ 0.759 0.483 0.148 -0.170 0.848 2.1244 0.85277 11 7 7 11 0.6364 0.6364 1.0000 R 1 .aGATCAA... HAATCAA 76 41 82 85 79 60 78 71.5714 86
oligos_7nt_mkv2 1792_MA0234.1_JASPAR_CORE_2009_ oligos_7nt_mkv2 1792_MA0234.1_JASPAR_CORE_2009_ 0.764 0.417 2.075 -0.055 0.830 2.0388 0.83173 11 6 6 11 0.5455 0.5455 1.0000 R 3 ...GGAGTA.. GGATTA 68 71 69 73 87 49 87 72.0000 87
oligos_6nt_mkv2 2670_MF0011.1_JASPAR_CORE_2009_ oligos_6nt_mkv2 2670_MF0011.1_JASPAR_CORE_2009_ 0.751 0.410 1.677 0.106 0.835 1.9840 0.83400 11 6 6 11 0.5455 0.5455 1.0000 R 3 ...ATCAAT.. AACAAW 85 80 71 60 83 44 83 72.2857 88 
 Host name	biow
 Job started	2014-09-06.011812
 Job done	2014-09-06.012135
 Seconds	170.99
	user	170.99
	system	3.48
	cuser	22.61
;	csystem	5.03