; convert-matrix  -v 1 -i $RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Input files
;	input	/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	13	17	18	2	0	2	26	0	6	5	16	7	25	1	0	28	26	9	9	7
c	3	2	2	0	0	0	0	3	13	3	2	5	1	0	25	0	0	0	2	5
g	5	1	0	0	0	26	0	1	3	3	4	9	2	0	0	0	0	3	2	5
t	7	8	8	26	28	0	2	24	6	17	6	7	0	27	3	0	2	16	15	11
//
a	12	8	11	1	0	3	27	0	6	6	15	5	26	2	0	28	26	4	11	9
c	4	5	4	0	1	0	0	12	9	4	3	5	1	0	26	0	2	0	2	1
g	3	3	4	1	0	25	0	3	7	3	5	14	1	0	0	0	0	5	0	5
t	9	12	9	26	27	0	1	13	6	15	5	4	0	26	2	0	0	19	15	13
//
a	2	6	0	11	0	0	11	11	11	2	4
c	3	3	0	0	0	11	0	0	0	2	1
g	2	0	11	0	0	0	0	0	0	0	0
t	4	2	0	0	11	0	0	0	0	7	6
//
; Host name	biow
; Job started	2014-09-06.011332
; Job done	2014-09-06.011332
; Seconds	0.27
;	user	0.27
;	system	0.01
;	cuser	0
;	csystem	0