; position-analysis -v 1 -i $RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/data/sequences/peak-motifs_test_maxlen1000_purged_ml30_mis0.fasta -format fasta -sort -return html,chi,sig,distrib,exp_occ,graphs,rank,index -max_graphs 100 -2str -noov -seqtype dna -l 6 -ci 50 -lth_occ 1 -lth_sig 0 -uth_rank 100 -img_format png -title ChIP-seq_FNR_E._coli_tunned_parameters_dyad_summits_50bps -origin center -max_graphs 20 -o $RSAT/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab
; Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010.
; Sequence file /vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/data/sequences/peak-motifs_test_maxlen1000_purged_ml30_mis0.fasta
; Sequence format fasta
; Sequence type dna
; Output file /vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab
; Oligo length 6
; Lower threshold on occurrences 1
; Occurrences counted on both strands
; Grouping reverse complements
; Background model estimation: homogeneous repartition
; Sequence statistics:
; Nb of sequences 109
; Sum of sequence lengths 11009
; Min sequence length 0
; Max sequence length 101
; Average sequence length 101
; Possible positions 20928
; Oligonucleotide statistics:
; Total occurrences 10437
; Total overlaps 27
; Position interval parameters:
; Position interval 50
; Number of windows 3
; Total positions 10464
; Degrees of freedom 2
; K-mer clustering parameters:
; Number of clusters 0
; Clustering method complete
; Position intervals:
; window [min,max] mid seq occ
; 1 -2 [-99,-50] -74.5 109 109
; 2 -1 [-49,0] -24.5 109 5450
; 3 0 [1,50] 25.5 109 4905
;
; Column headers
; 1 seq pattern sequence
; 2 id pattern identifier
; 3 occ pattern occurrences
; 4 over overlapping occurrences (discarded)
; 5 chi2 observed chi-square
; 6 df degrees of freedom
; 7 Pval P-value (probability for one word to be a false positive)
; 8 Eval E-value; expected number of false positives (Eval = Pval * nb_tests)
; 9 sig Significance (sig = -log10(Eval))
; 10 rank rank of the pattern according to sorting criterion
; 11 -74.5 occurrences in window 1 [-99,-50]
; 12 -24.5 occurrences in window 2 [-49,0]
; 13 25.5 occurrences in window 3 [1,50]
#seq id occ over chi2 df Pval Eval sig rank -74.5 -24.5 25.5
; Host name biow
; Job started 2014-09-06.011335
; Job done 2014-09-06.011335
; Seconds 0.95
; user 0.95
; system 0.03
; cuser 0
; csystem 0