; Sequence sets (name, permutations, file);	matrix_sites	0	/home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_matrix_sites.fasta
;	sequence_set1	2	/home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/sequence1.fasta
; Matrix sites before twin removal: 431/n; Matrix sites after twin removal: 269/n; Cross-validation commands
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_1.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_1.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_2.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_2.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_3.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_3.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_4.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_4.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_5.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_5.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_6.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_6.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_7.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_7.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_8.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_8.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_9.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_9.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_10.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_10.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_11.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_11.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_12.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_12.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_13.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_13.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_14.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_14.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_15.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_15.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_16.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_16.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_17.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_17.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_18.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_18.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_19.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_19.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_20.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_20.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_21.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_21.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_22.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_22.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_23.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_23.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_24.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_24.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_25.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_25.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_26.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_26.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_27.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_27.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_28.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_28.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_29.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_29.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_30.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_30.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_31.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_31.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_32.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_32.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_33.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_33.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_34.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_34.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_35.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_35.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_36.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_36.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_37.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_37.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_38.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_38.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_39.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_39.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_40.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_40.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_41.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_41.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_42.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_42.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_43.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_43.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_44.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_44.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_45.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_45.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_46.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_46.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_47.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_47.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_48.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_48.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_49.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_49.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_50.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_50.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_51.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_51.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_52.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_52.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_53.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_53.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_54.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_54.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_55.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_55.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_56.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_56.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_57.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_57.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_58.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_58.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_59.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_59.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_60.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_60.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_61.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_61.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_62.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_62.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_63.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_63.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_64.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_64.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_65.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_65.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_66.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_66.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_67.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_67.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_68.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_68.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_69.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_69.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_70.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_70.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_71.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_71.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_72.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_72.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_73.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_73.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_74.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_74.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_75.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_75.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_76.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_76.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_77.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_77.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_78.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_78.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_79.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_79.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_80.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_80.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_81.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_81.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_82.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_82.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_83.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_83.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_84.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_84.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_85.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_85.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_86.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_86.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_87.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_87.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_88.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_88.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_89.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_89.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_90.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_90.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_91.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_91.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_92.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_92.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_93.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_93.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_94.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_94.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_95.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_95.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_96.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_96.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_97.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_97.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_98.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_98.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_99.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_99.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_100.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_100.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_101.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_101.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_102.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_102.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_103.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_103.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_104.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_104.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_105.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_105.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_106.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_106.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_107.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_107.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_108.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_108.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_109.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_109.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_110.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_110.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_111.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_111.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_112.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_112.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_113.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_113.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_114.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_114.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_115.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_115.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_116.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_116.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_117.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_117.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_118.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_118.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_119.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_119.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_120.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_120.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_121.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_121.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_122.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_122.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_123.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_123.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_124.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_124.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_125.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_125.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_126.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_126.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_127.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_127.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_128.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_128.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_129.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_129.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_130.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_130.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_131.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_131.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_132.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_132.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_133.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_133.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_134.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_134.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_135.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_135.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_136.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_136.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_137.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_137.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_138.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_138.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_139.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_139.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_140.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_140.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_141.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_141.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_142.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_142.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_143.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_143.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_144.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_144.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_145.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_145.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_146.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_146.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_147.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_147.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_148.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_148.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_149.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_149.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_150.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_150.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_151.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_151.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_152.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_152.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_153.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_153.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_154.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_154.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_155.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_155.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_156.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_156.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_157.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_157.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_158.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_158.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_159.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_159.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_160.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_160.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_161.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_161.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_162.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_162.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_163.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_163.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_164.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_164.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_165.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_165.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_166.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_166.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_167.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_167.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_168.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_168.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_169.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_169.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_170.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_170.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_171.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_171.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_172.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_172.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_173.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_173.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_174.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_174.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_175.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_175.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_176.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_176.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_177.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_177.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_178.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_178.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_179.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_179.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_180.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_180.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_181.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_181.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_182.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_182.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_183.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_183.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_184.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_184.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_185.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_185.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_186.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_186.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_187.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_187.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_188.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_188.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_189.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_189.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_190.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_190.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_191.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_191.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_192.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_192.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_193.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_193.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_194.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_194.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_195.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_195.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_196.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_196.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_197.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_197.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_198.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_198.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_199.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_199.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_200.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_200.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_201.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_201.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_202.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_202.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_203.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_203.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_204.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_204.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_205.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_205.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_206.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_206.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_207.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_207.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_208.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_208.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_209.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_209.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_210.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_210.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_211.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_211.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_212.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_212.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_213.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_213.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_214.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_214.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_215.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_215.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_216.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_216.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_217.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_217.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_218.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_218.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_219.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_219.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_220.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_220.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_221.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_221.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_222.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_222.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_223.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_223.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_224.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_224.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_225.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_225.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_226.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_226.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_227.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_227.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_228.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_228.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_229.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_229.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_230.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_230.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_231.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_231.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_232.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_232.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_233.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_233.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_234.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_234.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_235.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_235.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_236.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_236.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_237.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_237.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_238.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_238.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_239.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_239.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_240.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_240.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_241.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_241.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_242.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_242.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_243.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_243.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_244.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_244.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_245.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_245.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_246.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_246.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_247.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_247.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_248.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_248.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_249.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_249.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_250.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_250.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_test_sites_251.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do463plusdo466_mmus_foxa1_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do463plusdo466_mmus_foxa1_liver_meme_top_m1_partial_matrix_251.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_1.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_1.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_2.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_2.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_3.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_3.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_4.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_4.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_5.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_5.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_6.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_6.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_7.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_7.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_8.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_8.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_9.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_9.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_10.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_10.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_11.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_11.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_12.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_12.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_13.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_13.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_14.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_14.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_15.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_15.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_16.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_16.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_17.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_17.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_18.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_18.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_19.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_19.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_20.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_20.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_21.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_21.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_22.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_22.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_23.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_23.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_24.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_24.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_25.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_25.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_26.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_26.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_27.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_27.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_28.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_28.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_29.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_29.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_30.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_30.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_31.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_31.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_32.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_32.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_33.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_33.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_34.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_34.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_35.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_35.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_36.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_36.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_37.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_37.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_38.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_38.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_39.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_39.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_40.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_40.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_41.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_41.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_42.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_42.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_43.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_43.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_44.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_44.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_45.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_45.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_46.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_46.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_47.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_47.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_48.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_48.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_49.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_49.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_50.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_50.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_51.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_51.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_52.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_52.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_53.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_53.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_54.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_54.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_55.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_55.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_56.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_56.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_57.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_57.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_58.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_58.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_59.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_59.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_60.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_60.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_61.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_61.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_62.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_62.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_63.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_63.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_64.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_64.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_65.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_65.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_66.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_66.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_67.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_67.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_68.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_68.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_69.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_69.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_70.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_70.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_71.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_71.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_72.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_72.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_73.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_73.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_74.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_74.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_75.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_75.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_76.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_76.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_77.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_77.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_78.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_78.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_79.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_79.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_80.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_80.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_81.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_81.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_82.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_82.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_83.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_83.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_84.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_84.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_85.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_85.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_86.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_86.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_87.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_87.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_88.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_88.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_89.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_89.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_90.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_90.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_91.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_91.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_92.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_92.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_93.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_93.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_94.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_94.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_95.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_95.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_96.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_96.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_97.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_97.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_98.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_98.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_99.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_99.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_100.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_100.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_101.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_101.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_102.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_102.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_103.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_103.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_104.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_104.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_105.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_105.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_106.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_106.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_107.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_107.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_108.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_108.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_109.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_109.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_110.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_110.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_111.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_111.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_112.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_112.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_113.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_113.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_114.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_114.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_115.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_115.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_116.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_116.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_117.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_117.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_118.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_118.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_119.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_119.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_120.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_120.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_121.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_121.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_122.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_122.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_123.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_123.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_124.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_124.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_125.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_125.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_126.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_126.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_127.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_127.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_128.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_128.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_129.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_129.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_130.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_130.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_131.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_131.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_132.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_132.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_133.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_133.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_134.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_134.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_135.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_135.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_136.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_136.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_137.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_137.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_138.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_138.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_139.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_139.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_140.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_140.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_141.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_141.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_142.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_142.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_143.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_143.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_144.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_144.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_145.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_145.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_146.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_146.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_147.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_147.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_148.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_148.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_149.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_149.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_150.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_150.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_151.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_151.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_152.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_152.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_153.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_153.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_154.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_154.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_155.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_155.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_156.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_156.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_157.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_157.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_158.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_158.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_159.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_159.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_160.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_160.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_161.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_161.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_162.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_162.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_163.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_163.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_164.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_164.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_165.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_165.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_166.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_166.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_167.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_167.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_168.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_168.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_169.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_169.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_170.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_170.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_171.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_171.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_172.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_172.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_173.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_173.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_174.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_174.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_175.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_175.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_176.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_176.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_177.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_177.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_178.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_178.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_179.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_179.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_180.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_180.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_181.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_181.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_182.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_182.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_183.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_183.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_184.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_184.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_185.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_185.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_186.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_186.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_187.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_187.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_188.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_188.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_189.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_189.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_190.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_190.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_191.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_191.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_192.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_192.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_193.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_193.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_194.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_194.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_195.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_195.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_196.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_196.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_197.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_197.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_198.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_198.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_199.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_199.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_200.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_200.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_201.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_201.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_202.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_202.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_203.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_203.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_204.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_204.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_205.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_205.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_206.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_206.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_207.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_207.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_208.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_208.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_209.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_209.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_210.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_210.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_211.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_211.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_212.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_212.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_213.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_213.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_214.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_214.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_215.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_215.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_216.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_216.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_217.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_217.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_218.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_218.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_219.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_219.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_220.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_220.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_221.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_221.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_222.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_222.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_223.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_223.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_224.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_224.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_225.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_225.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_226.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_226.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_227.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_227.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_228.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_228.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_229.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_229.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_230.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_230.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_231.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_231.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_232.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_232.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_233.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_233.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_234.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_234.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_235.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_235.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_236.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_236.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_237.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_237.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_238.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_238.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_239.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_239.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_240.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_240.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_241.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_241.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_242.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_242.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_243.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_243.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_244.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_244.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_245.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_245.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_246.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_246.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_247.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_247.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_248.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_248.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_249.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_249.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_250.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_250.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_251.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_251.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_252.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_252.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_253.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_253.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_254.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_254.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_255.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_255.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_256.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_256.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_257.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_257.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_258.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_258.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_259.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_259.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_260.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_260.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_261.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_261.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_262.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_262.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_263.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_263.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_264.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_264.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_265.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_265.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_266.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_266.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_267.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_267.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_268.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_268.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_test_sites_269.fasta -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_partial_matrix_269.tab -decimals 1 -return sites -pseudo 1 -1str | grep -v '^;' | grep -v '^#'

; 2014-09-06.000901	Computing score distribution
;	Sequence type         	matrix_sites
;	Sequence file         	/home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_matrix_sites.fasta
;	Type-specific options 	 -uth rank_pm 1 -1str -uth rank_pm 1 -1str
; Command:
/home/rsat/rsat/perl-scripts/matrix-scan -v 0 -matrix_format tab -bg_format inclusive -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_matrix_sites.fasta -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_matrix.tab -pseudo 1 -decimals 1 -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -bg_pseudo 0.01  -uth rank_pm 1 -1str -uth rank_pm 1 -1str -return sites | grep -v '^;' | grep -v '^#' | cut -f 8  | /home/rsat/rsat/perl-scripts/classfreq -v 1 -ci 0.1 -min -50.4 | cut -f 1,4,5,6,9  > /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_scan_matrix_sites_score_distrib.tab


; 2014-09-06.000902	Computing score distribution
;	Sequence type         	sequence_set1
;	Sequence file         	/home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/sequence1.fasta
; Command:
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/sequence1.fasta -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_matrix.tab -pseudo 1 -decimals 1 -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -bg_pseudo 0.01 -return distrib  > /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_scan_sequence_set1_score_distrib.tab


; 2014-09-06.000908	Computing score distribution
;	Sequence type         	sequence_set1_perm_col_1
;	Sequence file         	/home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/sequence1.fasta
; Command:
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/sequence1.fasta -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_matrix_perm_col_1.tab -pseudo 1 -decimals 1 -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -bg_pseudo 0.01 -return distrib  > /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_scan_sequence_set1_perm_col_1_score_distrib.tab


; 2014-09-06.000914	Computing score distribution
;	Sequence type         	sequence_set1_perm_col_2
;	Sequence file         	/home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/sequence1.fasta
; Command:
/home/rsat/rsat/bin/matrix-scan-quick -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/sequence1.fasta -m /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_matrix_perm_col_2.tab -pseudo 1 -decimals 1 -bgfile /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -bg_pseudo 0.01 -return distrib  > /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_scan_sequence_set1_perm_col_2_score_distrib.tab

;
; XYgraph command
/home/rsat/rsat/perl-scripts/XYgraph  -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_score_distrib_compa.tab -format png -lines -pointsize 0   -xcol 1 -ycol 2,3,4,5,6 -ymin 0  -ymax 1  -xgstep1 5 -xgstep2 1 -ygstep1 0.1 -ygstep2 0.02 -gp 'set size ratio 0.5'  -title1 'do560plusdo843_mmus_cebpa_liver_meme_top_m1' -legend  -xsize 800 -ysize 400  -xleg1 'matrix score'  -yleg1 'dCDF (log scale)'    -o /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_score_distrib_compa.png
;
; XYgraph command
/home/rsat/rsat/perl-scripts/XYgraph  -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_score_distrib_compa.tab -format png -lines -pointsize 0   -xcol 1 -ycol 2,3,4,5,6 -xgstep1 5 -xgstep2 1 -ymax 1 -ylog 10 -gp 'set size ratio 0.5'  -title1 'do560plusdo843_mmus_cebpa_liver_meme_top_m1' -legend  -xsize 800 -ysize 400  -xleg1 'matrix score'  -yleg1 'dCDF (log scale)'    -o /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_score_distrib_compa_logy.png
;
; XYgraph command
/home/rsat/rsat/perl-scripts/XYgraph -xlog 10  -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_score_distrib_compa.tab -format png -lines -pointsize 0   -xcol 2 -ycol 2,3,4,5,6 -ygstep1 0.1 -ygstep2 0.02 -ymax 1  -xmax 1  -title1 'do560plusdo843_mmus_cebpa_liver_meme_top_m1' -legend  -xsize 800 -ysize 400  -xleg1 'matrix score'  -yleg1 'dCDF (log scale)'   -o /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_score_distrib_compa_roc_xlog.png -xleg1 'FPR (Reference = theor)'  -yleg1 'Site Sn + other distributions' 
;
; XYgraph command
/home/rsat/rsat/perl-scripts/XYgraph  -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_theoretical_score_distrib_compa.tab -format png -lines -pointsize 0   -xcol 1 -ycol 2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159,160,161,162,163,164,165,166,167,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187,188,189,190,191,192,193,194,195,196,197,198,199,200,201,202,203,204,205,206,207,208,209,210,211,212,213,214,215,216,217,218,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233,234,235,236,237,238,239,240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255,256,257,258,259,260,261,262,263,264,265,266,267,268,269,270,271 -ymin 0  -ymax 1  -gp 'set size ratio 0.5'  -title1 'do560plusdo843_mmus_cebpa_liver_meme_top_m1' -legend  -xsize 800 -ysize 400  -xleg1 'matrix score'  -yleg1 'dCDF (log scale)'    -o /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_theoretical_score_distrib_compa.png
;
; XYgraph command
/home/rsat/rsat/perl-scripts/XYgraph  -i /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_theoretical_score_distrib_compa.tab -format png -lines -pointsize 0   -xcol 1 -ycol 2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159,160,161,162,163,164,165,166,167,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187,188,189,190,191,192,193,194,195,196,197,198,199,200,201,202,203,204,205,206,207,208,209,210,211,212,213,214,215,216,217,218,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233,234,235,236,237,238,239,240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255,256,257,258,259,260,261,262,263,264,265,266,267,268,269,270,271 -ymax 1 -ylog 10 -gp 'set size ratio 0.5'  -title1 'do560plusdo843_mmus_cebpa_liver_meme_top_m1' -legend  -xsize 800 -ysize 400  -xleg1 'matrix score'  -yleg1 'dCDF (log scale)'    -o /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_theoretical_score_distrib_compa_logy.png