; convert-matrix -v 1 -from transfac -i $RSAT/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_matrix.tf -to tab -o $RSAT/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_matrix_info.txt -bgfile $RSAT/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -bg_format inclusive -return counts,frequencies,weights,info,parameters,sites,logo -logo_format png -logo_opt '-e -M -t do560plusdo843_mmus_cebpa_liver_meme_top_m1 ' -logo_file $RSAT/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_logo ; Input files ; input /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_matrix.tf ; prior /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab ; Input format transfac ; Output files ; output /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_matrix_info.txt ; Output format tab ; pseudo-weight 1 ; Background model ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.26457 ; c 0.23303 ; g 0.23983 ; t 0.26257 a 204 0 0 35 0 259 80 300 431 1 143 c 69 0 0 0 431 48 258 130 0 169 145 g 138 0 0 365 0 85 0 0 0 78 60 t 20 431 431 31 0 39 93 1 0 183 83 // a 0.5 0.0 0.0 0.1 0.0 0.6 0.2 0.7 1.0 0.0 0.3 c 0.2 0.0 0.0 0.0 1.0 0.1 0.6 0.3 0.0 0.4 0.3 g 0.3 0.0 0.0 0.8 0.0 0.2 0.0 0.0 0.0 0.2 0.1 t 0.0 1.0 1.0 0.1 0.0 0.1 0.2 0.0 0.0 0.4 0.2 // a 0.6 -6.1 -6.1 -1.2 -6.1 0.8 -0.4 1.0 1.3 -4.5 0.2 c -0.4 -6.1 -6.1 -6.1 1.5 -0.7 0.9 0.3 -6.1 0.5 0.4 g 0.3 -6.1 -6.1 1.3 -6.1 -0.2 -6.1 -6.1 -6.1 -0.3 -0.5 t -1.7 1.3 1.3 -1.3 -6.1 -1.1 -0.2 -4.5 -6.1 0.5 -0.3 // a 0.3 -0.0 -0.0 -0.1 -0.0 0.5 -0.1 0.7 1.3 -0.0 0.1 c -0.1 -0.0 -0.0 -0.0 1.5 -0.1 0.6 0.1 -0.0 0.2 0.1 g 0.1 -0.0 -0.0 1.1 -0.0 -0.0 -0.0 -0.0 -0.0 -0.1 -0.1 t -0.1 1.3 1.3 -0.1 -0.0 -0.1 -0.0 -0.0 -0.0 0.2 -0.1 // ; Sites 431 >site_0 ATTGCACAACC >site_1 ATTGCACAACC >site_2 ATTGCACAATC >site_3 ATTGCACAATC >site_4 ATTGCACAACC >site_5 ATTGCACAACC >site_6 ATTGCACAACC >site_7 ATTGCACAATC >site_8 ATTGCACAACC >site_9 ATTGCACAACC >site_10 ATTGCACAATC >site_11 ATTGCACAACA >site_12 ATTGCACAATA >site_13 ATTGCACAATA >site_14 ATTGCACAATA >site_15 ATTGCACAACA >site_16 ATTGCACAATA >site_17 ATTGCACAACA >site_18 ATTGCACAACA >site_19 ATTGCACAACA >site_20 ATTGCACAATA >site_21 ATTGCACAACA >site_22 ATTGCACAACA >site_23 ATTGCACAACA >site_24 ATTGCACAACA >site_25 ATTGCACAATA >site_26 GTTGCACAATC >site_27 GTTGCACAATC >site_28 GTTGCACAACC >site_29 GTTGCACAATC >site_30 GTTGCACAATC >site_31 GTTGCACAACC >site_32 GTTGCACAATC >site_33 GTTGCACAATC >site_34 GTTGCACAATC >site_35 GTTGCACAACC >site_36 GTTGCACAATC >site_37 GTTGCACAATC >site_38 GTTGCACAATA >site_39 GTTGCACAACA >site_40 GTTGCACAATA >site_41 GTTGCACAATA >site_42 GTTGCACAATA >site_43 GTTGCACAACA >site_44 GTTGCACAACA >site_45 GTTGCACAACA >site_46 GTTGCACAACA >site_47 GTTGCACAACA >site_48 ATTGCACAATT >site_49 ATTGCACAATT >site_50 ATTGCACAATT >site_51 ATTGCACAATT >site_52 ATTGCACAACT >site_53 ATTGCACAATT >site_54 ATTGCACAACT >site_55 ATTGCACAACT >site_56 ATTGCACAATT >site_57 ATTGCACAATT >site_58 ATTGCACAATT >site_59 ATTGCACAATT >site_60 ATTGCACAATT >site_61 ATTGCACAATT >site_62 ATTGCACAATT >site_63 ATTGCACAACT >site_64 ATTGCACAAGC >site_65 ATTGCACAAGC >site_66 ATTGCACCATA >site_67 GTTGCACAACT >site_68 ATTGCACAATG >site_69 GTTGCACAACT >site_70 GTTGCACAATT >site_71 GTTGCACAACT >site_72 ATTGCACAATG >site_73 GTTGCACAATT >site_74 ATTGCACAAGA >site_75 ATTGCACAAGA >site_76 ATTGCACAAGA >site_77 GTTGCACAACT >site_78 ATTGCACAAGA >site_79 ATTGCACAACG >site_80 ATTGCACCACA >site_81 ATTGCACAACG >site_82 ATTGCACAATG >site_83 ATTGCACAACG >site_84 GTTGCACAATT >site_85 ATTGCACAAGA >site_86 GTTGCACAACT >site_87 ATTGCACAAGA >site_88 GTTGCACAATT >site_89 ATTGCACAACG >site_90 CTTGCACAACC >site_91 GTTGCACAAGC >site_92 CTTGCACAATC >site_93 CTTGCACAACC >site_94 ATTGCGCAATC >site_95 CTTGCACAATC >site_96 CTTGCACAATC >site_97 ATTGCGCAATC >site_98 CTTGCACAATC >site_99 CTTGCACAATC >site_100 ATTGCGCAATC >site_101 CTTGCACAACC >site_102 CTTGCACAACC >site_103 CTTGCACAATA >site_104 ATTGCGCAATA >site_105 ATTGCGCAATA >site_106 CTTGCACAACA >site_107 GTTGCACAATG >site_108 GTTGCACAATG >site_109 GTTGCACAAGA >site_110 CTTGCACAATA >site_111 GTTGCACAACG >site_112 ATTGCGCAACA >site_113 GTTGCACAATG >site_114 GTTGCACAATG >site_115 ATTGCGCAATA >site_116 GTTGCACAATG >site_117 GTTGCACAATG >site_118 GTTGCGCAACC >site_119 GTTGCGCAATC >site_120 GTTGCGCAACC >site_121 ATTGCATAACA >site_122 ATTGCATAACA >site_123 GTTGCGCAATA >site_124 GTTGCATAACC >site_125 ATTGCAAAATC >site_126 ATTGCAAAACC >site_127 GTTGCATAATC >site_128 ATTGCACAAGT >site_129 ATTGCAAAACA >site_130 ATTGCAAAATA >site_131 GTTGCATAATA >site_132 GTTGCAAAATC >site_133 ATTGCACCATG >site_134 ATTGCACAAGG >site_135 GTTGCACAAGT >site_136 ATTGCGCAATT >site_137 ATTGCCCAATC >site_138 ATTGCACAAGG >site_139 GTTGCAAAACC >site_140 ATTGCACAAGG >site_141 GTTGCACAAGT >site_142 ATTGCCCAATA >site_143 ATTGCGCCATC >site_144 ATTGCCCAACA >site_145 ATTGCCCAACA >site_146 ATTGCGCAAGC >site_147 CTTGCACAAGC >site_148 ATTGCGCAAGC >site_149 CTTGCACAAGC >site_150 GTTGCAAAACA >site_151 CTTGCACAATG >site_152 CTTGCACAATG >site_153 ATTGCGCAAGA >site_154 ATTGCATCATC >site_155 CTTGCACAACG >site_156 ATTGCATCATC >site_157 ATTGCGCCACA >site_158 ATTGCATCATC >site_159 CTTGCACAATG >site_160 GTTGCACAAGG >site_161 ATTGCATCACC >site_162 GTTGCACCAGA >site_163 GTTGCACCAGA >site_164 GTTGCACCAGA >site_165 GTTGCACCATG >site_166 ATTGCATCACA >site_167 ATTGCATAAGA >site_168 CTTGCGCAACC >site_169 ATTGCAAAATT >site_170 ATTGCATCATA >site_171 ATTGCTCAACC >site_172 ATTGCATCACA >site_173 ATTGCATCACA >site_174 GTTGCGCAAGC >site_175 ATTGCATCACA >site_176 ATTGCAAAATT >site_177 GTTGCCCAACA >site_178 GTTGCCCAACA >site_179 ATTGCATAAGA >site_180 ATTGCTCAATC >site_181 ATTGCAACACC >site_182 ATTGCGTAACC >site_183 ATTGCAACATC >site_184 CTTGCATAACC >site_185 ATTGCAACACC >site_186 ATTGCAACATC >site_187 ATTGCTCAACA >site_188 ATTGCAACATC >site_189 GTTGCATCATC >site_190 GTTGCGCCACA >site_191 CTTGCGCAACA >site_192 ATTGCAACACA >site_193 GTTGCTCAATC >site_194 GTTGCTCAATC >site_195 GTTGCATCACA >site_196 GTTGCTCAATC >site_197 GTTGCTCAACC >site_198 ATTGCAACACA >site_199 GTTGCATCACA >site_200 GTTGCTCAATC >site_201 ATTGCAACACA >site_202 GTTGCATCACA >site_203 GTTGCATAATG >site_204 GTTGCAAAACT >site_205 TTTGCACAATC >site_206 TTTGCACAATC >site_207 TTTGCACAATC >site_208 GTTGCAACACC >site_209 GTTGCAACACC >site_210 ATTGCGAAATA >site_211 ATTACACAACC >site_212 ATTACACAACC >site_213 ATTACACAATC >site_214 ATTACACAATC >site_215 ATTACACAACC >site_216 GTTGCAACACA >site_217 ATTGCCCAATG >site_218 ATTGCATCACT >site_219 ATTGCCCCATA >site_220 TTTGCACAATA >site_221 ATTGCCCCACA >site_222 GTTGCAACACA >site_223 ATTGCCCAATG >site_224 CTTGCAAAACA >site_225 ATTGCCCAACG >site_226 TTTGCACAATA >site_227 GTTGCAACATA >site_228 GTTGCGTAATA >site_229 ATTTCACAACC >site_230 ATTGCTCAATT >site_231 ATTACACAACA >site_232 GTTGCACCAGG >site_233 GTTGCGAAACC >site_234 ATTACACAACA >site_235 CTTGCCCAACC >site_236 ATTGCTCAACT >site_237 ATTGCATCAGC >site_238 ATTTCACAACC >site_239 ATTTCACAACC >site_240 ATTGCGTAACT >site_241 ATTTCACAACA >site_242 GTTGCCCAAGA >site_243 ATTGCATCATG >site_244 CTTGCGCAAGC >site_245 ATTGCATCATG >site_246 ATTGCAACACT >site_247 GTTACACAACC >site_248 ATTGCAACACT >site_249 ATTGCGTAACT >site_250 GTTGCCCCACA >site_251 GTTGCCCAATG >site_252 GTTGCCCAAGA >site_253 GTTGCCCAATG >site_254 CTTGCGCCATC >site_255 GTTACACAATC >site_256 ATTTCACAACA >site_257 GTTGCCCAACG >site_258 GTTGCGAAATA >site_259 CTTGCATCATC >site_260 GTTACACAATA >site_261 CTTGCATCACC >site_262 ATTGCGTAAGC >site_263 ATTGCAACAGC >site_264 GTTGCATCAGC >site_265 CTTGCGCAAGA >site_266 GTTTCACAATC >site_267 GTTACACAACA >site_268 ATTGCTCAAGA >site_269 CTTGCATCACC >site_270 ATTGCGTCATC >site_271 CTTGCGCAACG >site_272 GTTGCTCAACT >site_273 CTTGCATCATC >site_274 CTTGCGCCACA >site_275 GTTGCAACACT >site_276 TTTGCACAACT >site_277 ATTGCAACAGA >site_278 ATTGCAACAGA >site_279 CTTGCATAATG >site_280 TTTGCACAACT >site_281 ATTGCGTCATA >site_282 GTTGCATCAGA >site_283 ATTGCGAAACT >site_284 GTTGCAACATT >site_285 GTTGCATCAGA >site_286 ATTGCGTAAGA >site_287 ATTGCAACACG >site_288 ATTGCGAAAGC >site_289 ATTGCGACACC >site_290 CTTGCGTAACC >site_291 CTTGCAACATC >site_292 GTTGCTCAAGA >site_293 ATTGCTTAACC >site_294 CTTGCTCAATA >site_295 ATTACACAACT >site_296 ATTACACAACT >site_297 CTTGCAACATC >site_298 GTTGCCTAACA >site_299 ATTGCGACACC >site_300 CTTGCGTAACA >site_301 GTTGCAACATG >site_302 CTTGCAAAACG >site_303 GTTGCAACATG >site_304 ATTGCTTAATA >site_305 ATTTCACAACT >site_306 ATTGCGACATA >site_307 ATTGCGAAATG >site_308 ATTACACCACA >site_309 ATTGCTCAAGT >site_310 GTTGCGACATC >site_311 GTTGCGACATC >site_312 GTTGCTTAACC >site_313 ATTGCTAAACC >site_314 ATTGCTAAACC >site_315 CTTGCGAAATC >site_316 CTTGCCCCACC >site_317 CTTGCCCCATC >site_318 GTTACACAACT >site_319 CTTGCCCAAGA >site_320 ATTGCCTCACC >site_321 ATTGCCTCATC >site_322 ATTTCACAATG >site_323 ATTGCATCAGG >site_324 ATTTCACAATG >site_325 ATTGCCTCATC >site_326 ATTACGCAACC >site_327 CTTGCATCATT >site_328 TTTGCGCAATA >site_329 CTTGCGAAATA >site_330 GTTGCTTAATA >site_331 GTTTCACAATT >site_332 ATTGCCAAATT >site_333 CTTACACAATA >site_334 CTTACACAATA >site_335 CTTGCTCAACT >site_336 CTTACACAATA >site_337 ATTGCGTCACG >site_338 CTTGCATCAGA >site_339 ATTGCGTAAGG >site_340 ATTGCCACATC >site_341 GTTGCCTCACC >site_342 GTTGCGTAAGT >site_343 GTTTCACAAGA >site_344 GTTTCACAAGA >site_345 GTTGCAACAGT >site_346 GTTTCACAATG >site_347 CTTGCTCAAGA >site_348 ATTGCCACACA >site_349 ATTGCCAAATG >site_350 ATTGCGACAGC >site_351 ATTGCTTCACC >site_352 ATTGCCACATA >site_353 GTTGCGTAAGG >site_354 CTTGCAACATG >site_355 ATTGCTTCACA >site_356 TTTGCGCAATT >site_357 CTTACACAATT >site_358 TTTGCGCAAGC >site_359 GTTGCGACAGC >site_360 GTTGCTTCATC >site_361 ATTTCAAAACA >site_362 GTTGCTTCATC >site_363 CTTGCGACACC >site_364 GTTACACAAGT >site_365 CTTGCTTAATC >site_366 ATTGCCTAAGT >site_367 GTTGCGACAGA >site_368 TTTGCGCAAGA >site_369 ATTACCCAACA >site_370 CTTGCGAAATG >site_371 GTTGCGACAGA >site_372 TTTGCGCAAGA >site_373 TTTGCGCAAGA >site_374 TTTGCATCATC >site_375 TTTGCGCAATG >site_376 GTTGCGACATG >site_377 TTTGCGCAAGA >site_378 ATTGCCTCACG >site_379 GTTTCAAAACA >site_380 GTTGCCTCATT >site_381 GTTGCCTCACT >site_382 CTTGCGTAAGT >site_383 CTTGCCTCATC >site_384 CTTGCGTAAGT >site_385 TTTGCGTAATC >site_386 CTTGCCTCATC >site_387 CTTGCGTCACT >site_388 ATTGCGTCAGG >site_389 GTTACATAACT >site_390 GTTGCCACACT >site_391 GTTTCATAATT >site_392 ATTACAACACC >site_393 GTTTCCCAACA >site_394 ATTACCCAATT >site_395 ATTGCTTCATG >site_396 CTTGCGACACT >site_397 GTTACATCATA >site_398 ATTGCTTCATG >site_399 CTTGCGTAAGG >site_400 CTTGCCACACA >site_401 TTTGCGAAACA >site_402 ATTACCCAATG >site_403 GTTGCTACATT >site_404 CTTGCTTCATA >site_405 CTTGCGACAGA >site_406 GTTACCCAAGC >site_407 ATTACTCAATT >site_408 ATTTCTCAACT >site_409 ATTTCAACACT >site_410 ATTGCACAAAC >site_411 ATTTCCTAACA >site_412 GTTACAACATT >site_413 ATTACCCAAGT >site_414 ATTACGACATC >site_415 TTTACACAAGA >site_416 ATTTCCCCAGC >site_417 ATTACTTAATA >site_418 GTTTCGTCACC >site_419 GTTTCGTCACA >site_420 CTTTCACCAGG >site_421 TTTGCGACACT >site_422 GTTGCACTATC >site_423 ATTTCGTCATT >site_424 ATTTCGTCATT >site_425 CTTTCTCAATT >site_426 ATTTCGACATT >site_427 ATTTCTTCACC >site_428 CTTTCCCAAGT >site_429 GTTTCTTCACC >site_430 GTTACTTCACT ; ; Matrix parameters ; Columns 11 ; Rows 4 ; Alphabet a|c|g|t ; Prior a:0.264573486852274|c:0.233031168150323|g:0.239829744535815|t:0.262565600461588 ; program transfac ; matrix.nb 1 ; accession do560+do843_mmus_cebpa_liver_meme_top_m1 ; AC do560+do843_mmus_cebpa_liver_meme_top_m1 ; id do560+do843_mmus_cebpa_liver_meme_top_m1 ; name do560plusdo843_mmus_cebpa_liver_meme_top_m1 ; description rTTGCacmAym ; statistical_basis 431 sequences ; sites 431 ; min.prior 0.233031 ; alphabet.size 4 ; max.bits 2 ; total.information 8.36598 ; information.per.column 0.760543 ; max.possible.info.per.col 1.45658 ; consensus.strict aTTGCacaAcc ; consensus.strict.rc GGTTGTGCAAT ; consensus.IUPAC rTTGCacmAym ; consensus.IUPAC.rc KRTKGTGCAAY ; consensus.regexp [ag]TTGCac[ac]A[ct][ac] ; consensus.regexp.rc [GT][AG]T[GT]GTGCAA[CT] ; residues.content.crude.freq a:0.3065|c:0.2637|g:0.1531|t:0.2767 ; G+C.content.crude.freq 0.41679 ; residues.content.corrected.freq a:0.3064|c:0.2636|g:0.1533|t:0.2767 ; G+C.content.corrected.freq 0.41692 ; min(P(S|M)) 2.52084e-29 ; max(P(S|M)) 0.0141185 ; proba_range 0.0141185 ; Wmin -50.4 ; Wmax 11 ; Wrange 61.4 ; logo file:/home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1//matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_logo_m1.png ; logo file:/home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do560plusdo843_mmus_cebpa_liver_meme_top_m1//matrix-quality_2014-09-05.235841_do560plusdo843_mmus_cebpa_liver_meme_top_m1_logo_m1_rc.png ; Host name rsat ; Job started 2014-09-06.000348 ; Job done 2014-09-06.000348 ; Seconds 0.34 ; user 0.34 ; system 0.01 ; cuser 0.31 ; csystem 0.01