; convert-matrix -v 1 -from transfac -i $RSAT/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do798plusdo735_mmus_hnf6_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do798plusdo735_mmus_hnf6_liver_meme_top_m1_matrix.tf -to tab -o $RSAT/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do798plusdo735_mmus_hnf6_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do798plusdo735_mmus_hnf6_liver_meme_top_m1_matrix_info.txt -bgfile $RSAT/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab -bg_format inclusive -return counts,frequencies,weights,info,parameters,sites,logo -logo_format png -logo_opt '-e -M -t do798plusdo735_mmus_hnf6_liver_meme_top_m1 ' -logo_file $RSAT/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do798plusdo735_mmus_hnf6_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do798plusdo735_mmus_hnf6_liver_meme_top_m1_logo ; Input files ; input /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do798plusdo735_mmus_hnf6_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do798plusdo735_mmus_hnf6_liver_meme_top_m1_matrix.tf ; prior /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/matrix-quality_2014-09-05.2358412nt_upstream-noorf_Canis_familiaris_EnsEMBL-ovlp-1str.freq.gz_inclusive.tab ; Input format transfac ; Output files ; output /home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do798plusdo735_mmus_hnf6_liver_meme_top_m1/matrix-quality_2014-09-05.235841_do798plusdo735_mmus_hnf6_liver_meme_top_m1_matrix_info.txt ; Output format tab ; pseudo-weight 1 ; Background model ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.26457 ; c 0.23303 ; g 0.23983 ; t 0.26257 a 141 93 50 13 386 0 0 0 386 0 0 63 114 69 52 c 77 71 96 83 0 0 144 0 0 19 168 47 93 97 90 g 69 88 101 79 0 0 0 386 0 0 8 114 80 43 73 t 99 134 139 211 0 386 242 0 0 367 210 162 99 177 171 // a 0.4 0.2 0.1 0.0 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.2 0.3 0.2 0.1 c 0.2 0.2 0.2 0.2 0.0 0.0 0.4 0.0 0.0 0.0 0.4 0.1 0.2 0.3 0.2 g 0.2 0.2 0.3 0.2 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.3 0.2 0.1 0.2 t 0.3 0.3 0.4 0.5 0.0 1.0 0.6 0.0 0.0 0.9 0.5 0.4 0.3 0.5 0.4 // a 0.3 -0.1 -0.7 -2.0 1.3 -6.0 -6.0 -6.0 1.3 -6.0 -6.0 -0.5 0.1 -0.4 -0.7 c -0.2 -0.2 0.1 -0.1 -6.0 -6.0 0.5 -6.0 -6.0 -1.5 0.6 -0.6 0.0 0.1 0.0 g -0.3 -0.1 0.1 -0.2 -6.0 -6.0 -6.0 1.4 -6.0 -6.0 -2.4 0.2 -0.1 -0.8 -0.2 t -0.0 0.3 0.3 0.7 -6.0 1.3 0.9 -6.0 -6.0 1.3 0.7 0.5 -0.0 0.6 0.5 // a 0.1 -0.0 -0.1 -0.1 1.3 -0.0 -0.0 -0.0 1.3 -0.0 -0.0 -0.1 0.0 -0.1 -0.1 c -0.0 -0.0 0.0 -0.0 -0.0 -0.0 0.2 -0.0 -0.0 -0.1 0.3 -0.1 0.0 0.0 0.0 g -0.1 -0.0 0.0 -0.0 -0.0 -0.0 -0.0 1.4 -0.0 -0.0 -0.1 0.1 -0.0 -0.1 -0.0 t -0.0 0.1 0.1 0.4 -0.0 1.3 0.5 -0.0 -0.0 1.2 0.4 0.2 -0.0 0.3 0.2 // ; Sites 386 >site_0 ATTTATTGATTTATT >site_1 ATTTATTGATTTTTT >site_2 ATGTATTGATTTATT >site_3 ATTTATTGATTGATT >site_4 ATGTATTGATTGATT >site_5 TTTTATTGATTTATT >site_6 ATTTATTGATTGGTT >site_7 CTTTATTGATTTATT >site_8 ACTTATTGATTTATT >site_9 TTTTATTGATCTTTT >site_10 AAGTATTGATCTATT >site_11 TTGTATTGATTTTTT >site_12 TTTTATTGATTGATT >site_13 ATCTATTGATCTGTT >site_14 ATGTATTGATTTTCT >site_15 ATGTATTGATTTTCT >site_16 AAGTATTGATTGATT >site_17 ATTTATTGATCTTCT >site_18 ACTTATTGATTTGTT >site_19 TATTATTGATTTCTT >site_20 AGGTATTGATTGGTT >site_21 ATCTATCGATTGATT >site_22 ATTCATTGATTTATT >site_23 TTTTATCGATTGATT >site_24 CTTTATTGATCGCTT >site_25 ATTTATTGATTAATT >site_26 AGGTATTGATTTCTC >site_27 ATCTATCGATCGATT >site_28 AGGTATTGATTTCCT >site_29 GGTTATTGATTTTTT >site_30 GTCTATTGATCTATT >site_31 ATTGATTGATTGATT >site_32 ATTTATTGATTGTTG >site_33 AATTATTGATTGATC >site_34 TCTTATTGATCTTTT >site_35 ATTGATTGATTGATT >site_36 ATTGATTGATTGATT >site_37 ATTGATTGATTGATT >site_38 ATTGATTGATTGATT >site_39 AATTATTGATCTCTC >site_40 ATTGATTGATTGATT >site_41 GGCTATTGATTTATT >site_42 ATTGATTGATTGATT >site_43 ATTGATTGATTGATT >site_44 ATTGATTGATTGATT >site_45 ATTGATTGATTGATT >site_46 ATTGATTGATTGATT >site_47 ATCTATTGATCTGCT >site_48 GAGTATTGATTTTTT >site_49 ATTTATTGATTTATA >site_50 CAGTATTGATTGATT >site_51 AATTATTGATTTCTG >site_52 AGTGATTGATTTTTT >site_53 ATTGATTGATCGATT >site_54 ATTTATTGATCACTT >site_55 CCCTATTGATTTATT >site_56 TATTATTGATTGGTT >site_57 GTTTATTGATTTTTC >site_58 CTGTATTGATTTTCT >site_59 AGGTATTGATTTCTG >site_60 TTCTATTGATTGATC >site_61 TGTTATTGATCTTTC >site_62 GATTATTGATCTGTT >site_63 TTTTATTGATCGCCT >site_64 ATTGATTGATTGGTT >site_65 CTTTATTGATTTTTG >site_66 TGTTATTGATCTTTC >site_67 TCCTATTGATCTTTT >site_68 TACTATTGATTTACT >site_69 ATGTATTGATCCATT >site_70 GTTTATTGATTGCCT >site_71 GATTATTGATTTACT >site_72 ATTTATTGATCTCGT >site_73 TTTCATTGATTTGTT >site_74 TTGTATTGATCTTTG >site_75 AGTTATCGATCTGTC >site_76 ATCTATCGATCGATC >site_77 ATCGATTGATCGATT >site_78 ATGCATTGATTTATC >site_79 TTCTATTGATTAATT >site_80 AAGGATTGATTGATT >site_81 CACTATTGATCGCTT >site_82 CTGTATTGATCTCTG >site_83 TTGTATTGATCTGTG >site_84 TACTATTGATTTTTC >site_85 AGCCATTGATCTCTT >site_86 CAGTATTGATTTTCT >site_87 ACTTATTGATTACTT >site_88 CAGTATTGATTTTTC >site_89 TGCTATTGATTTCTG >site_90 TGTTATTGATCTGTG >site_91 AGGTATTGATTCCTT >site_92 GATTATTGATTGACT >site_93 TTTTATTGATTGGAT >site_94 TTTTATTGATTGGAT >site_95 TTTCATTGATCGTTT >site_96 ATTGATTGATCGATC >site_97 CTCTATTGATTTTAT >site_98 CTATATTGATTTGTT >site_99 ATTTATTGATTCTCT >site_100 AGCCATCGATTTCTT >site_101 AGTTATCGATCGAAT >site_102 AGCTATTGATTGCCC >site_103 TTATATTGATCGCTT >site_104 AGCTATCGATTTTAT >site_105 TAGCATTGATTGATT >site_106 TTTTATTGATCTTAC >site_107 CTTTATTGATTTCAC >site_108 GATTATTGATCTAAT >site_109 CAGTATTGATCGCCT >site_110 TTTGATTGATTTGTC >site_111 GCTTATTGATCTATG >site_112 TGTTATTGATTCCTT >site_113 ATCGATTGATCGATC >site_114 ATCGATTGATCGATC >site_115 GTGTATTGATTTCCG >site_116 GTGTATTGATCAGTT >site_117 GGTTATTGATTAGTT >site_118 TGGTATTGATCGACC >site_119 ATTGATCGATCGATC >site_120 ATGTATTGATTGCAG >site_121 AAGTATTGATTTTAG >site_122 ACCTATTGATTAACT >site_123 ATTTATTGATTTGGG >site_124 AGGGATCGATTTTCT >site_125 GGGTATTGATTGACC >site_126 CGTGATTGATTTCCT >site_127 CTCCATTGATTTTTC >site_128 AGGGATTGATTAATT >site_129 TGATATCGATTGATT >site_130 AGGTATTGATTCCTC >site_131 CACTATCGATCTTTC >site_132 ATCTATCGATCGGCC >site_133 GTGCATTGATTTTCT >site_134 GCCTATTGATTTCAT >site_135 GTTGATTGATTTTTG >site_136 ATCCATCGATCTATG >site_137 AGGCATTGATCTCAT >site_138 TTTCATTGATTTTCC >site_139 AATGATCGATTTGCT >site_140 GAATATTGATTGGTT >site_141 CTATATTGATTAATT >site_142 AGCGATCGATCTCTC >site_143 TCTTATTGATTGTGT >site_144 GCTTATCGATCTCTG >site_145 CATTATCGATCACTT >site_146 AACTATTGATTATTG >site_147 CTTTATTGATTGCAG >site_148 AACTATTGATCTAGC >site_149 CACTATCGATCTCTG >site_150 GTTTATCGATTGAAC >site_151 TGCTATTGATCGCTA >site_152 ACTTATTGATCTAGG >site_153 ATTTATTGATTCTGT >site_154 AATCATTGATTTTTA >site_155 CATTATTGATTTTAG >site_156 ACCGATCGATTTCTC >site_157 CGCTATTGATTATCT >site_158 TTCTATTGATCACTG >site_159 AGGGATCGATTTTAT >site_160 GTAGATTGATTTTTT >site_161 CTTGATCGATCGCCT >site_162 CATTATTGATTCCTC >site_163 CTGGATCGATTGCTC >site_164 GTGGATCGATCTCTC >site_165 CATTATTGATTTCCA >site_166 CAGTATTGATCTGAC >site_167 TAGCATTGATTGGTC >site_168 CTGTATTGATCCATG >site_169 ATCGATTGATCAATC >site_170 CTCGATTGATCGATG >site_171 AATTATTGATTTGAA >site_172 ATTCATTGATTTCCA >site_173 ACTTATTGATTGGGC >site_174 CATTATTGATCGGTA >site_175 TGGGATCGATTTGCT >site_176 ACTTATTGATTAAAC >site_177 AGATATCGATTGCAT >site_178 AGTCATTGATTCACT >site_179 ACCTATTGATTGGAG >site_180 TTGGATCGATTTTCC >site_181 AACCATTGATCCATT >site_182 CAGCATCGATTTTTC >site_183 TAGCATCGATCTTCT >site_184 AGATATCGATTTTGT >site_185 GGATATTGATTTGAT >site_186 CTCTATTGATTGGGC >site_187 GGTTATCGATCACTC >site_188 TCTCATCGATCTGCT >site_189 GAGTATTGATTATTG >site_190 TCCGATCGATTTCTC >site_191 ATCGATTGATTCCCT >site_192 ACTTATCGATCAGTG >site_193 TGTGATTGATTTGTA >site_194 ACTCATCGATCGAAT >site_195 TTCTATTGATTATGT >site_196 TATTATCGATCAGCT >site_197 CCCTATTGATCACTC >site_198 GTGGATCGATCTGTG >site_199 TCCCATTGATTTCCC >site_200 AAGGATTGATTTTAG >site_201 TTTCATTGATTATTG >site_202 TGCGATCGATCGTTC >site_203 TAATATTGATCGCAT >site_204 TACCATTGATTCATT >site_205 TTGCATTGATTTACA >site_206 CCCCATCGATTTTCT >site_207 TTGCATTGATTAGCT >site_208 TCATATCGATTGATG >site_209 TCTTATTGATTGAAA >site_210 CCGTATTGATCAGTG >site_211 TTTGATCGATCAACT >site_212 CAGTATTGATCTTGG >site_213 TTTGATTGATTTAGG >site_214 AAACATCGATTTTCT >site_215 AGGGATCGATCTGTA >site_216 CACCATCGATCGACT >site_217 TGGGATCGATTTGCC >site_218 GGTCATCGATTTCCC >site_219 GGCCATTGATTGACC >site_220 ATCGATTGATCTTGG >site_221 GGATATTGATCTTGT >site_222 TATTATCGATCCTTG >site_223 GGGGATCGATCGGCT >site_224 GATTATTGATCCCAT >site_225 CCCTATTGATCCATG >site_226 ATGGATCGATTGCAG >site_227 TCCCATCGATCTCTG >site_228 GCCCATTGATTGAAT >site_229 AAATATCGATTGAAC >site_230 GCCTATTGATCTGAG >site_231 AGCCATTGATTCATG >site_232 CGGTATTGATCATGT >site_233 GTGCATCGATCGCAT >site_234 GATTATTGATTATGT >site_235 CTCTATTGATTCCTA >site_236 CAGTATCGATCAGTG >site_237 ATCTATTGATCCTCA >site_238 CAGGATTGATTGCTA >site_239 GAGCATTGATTAATC >site_240 GGGCATCGATTAGTT >site_241 GGCCATCGATCTGTG >site_242 AGATATTGATCCTTG >site_243 TGTCATTGATTATAT >site_244 CAGTATCGATTGGAG >site_245 TACGATCGATTGCAT >site_246 ATTTATCGATCCACA >site_247 ACCTATTGATCCTTA >site_248 GCTGATCGATTATTT >site_249 CCCCATCGATCTTTG >site_250 AAACATTGATTTTTA >site_251 GCCGATCGATCGCCT >site_252 GACTATTGATCGGCA >site_253 CTGGATCGATCACCT >site_254 GGGTATCGATCAGAT >site_255 ACCCATTGATTGCAG >site_256 AGCTATTGATCAGCA >site_257 TAGCATCGATCTCTA >site_258 TAGCATTGATTTCCA >site_259 GGCCATTGATTACTC >site_260 GGCGATCGATCGCTG >site_261 ACTCATTGATTATGT >site_262 AGGTATTGATCCAGG >site_263 CAAGATCGATTTTCT >site_264 GGTTATTGATTGTGA >site_265 GCGGATCGATTGACC >site_266 CGGGATCGATTGAAC >site_267 CTCCATTGATCTGCA >site_268 AGTCATCGATCGGAG >site_269 AAATATTGATTACTA >site_270 CCCCATCGATCTTCC >site_271 CTCAATTGATTTTTT >site_272 ACAGATCGATTTTAT >site_273 TACTATCGATCCACC >site_274 AAGCATCGATCCTTC >site_275 CCAGATCGATTTTCT >site_276 ATTCATCGATTCCCG >site_277 GTGCATCGATCCATC >site_278 GTCTATTGATTGGGA >site_279 CAATATTGATCCCCT >site_280 CCTTATCGATTACAC >site_281 AGATATTGATCTAGA >site_282 GACTATTGATCCAGT >site_283 CAGCATCGATCTGTA >site_284 GCCCATCGATCTCCC >site_285 GCCTATTGATCACTA >site_286 TCGCATTGATCGCAG >site_287 TGTGATTGATTAGTA >site_288 GAGTATCGATCGTGG >site_289 TTGTATCGATTCTGC >site_290 GAGTATTGATCATAG >site_291 CCACATCGATCTTCT >site_292 GAATATTGATTAGTG >site_293 GTCCATTGATCATCC >site_294 ATTTATTGATGGACT >site_295 CCCTATTGATTAACA >site_296 CAGTATCGATCAGTA >site_297 AGGCATCGATCAGCC >site_298 GTTCATCGATTGGGC >site_299 ACAGATCGATTTTTA >site_300 TATCATCGATCGACA >site_301 TGATATCGATTTTGG >site_302 CGTGATCGATCTGCA >site_303 GACGATTGATTGACA >site_304 CCCCATCGATCTCAC >site_305 CCCCATCGATCTCAC >site_306 CATTATTGATCAAAA >site_307 CAGCATCGATTTCCA >site_308 CTTGATCGATCCACC >site_309 CCCCATCGATCTCAC >site_310 TGTTATTGATCCAAA >site_311 AATTATTGACCTGCT >site_312 TTGTATCGATCCGCA >site_313 TGTGATCGATCGGGC >site_314 TCAGATCGATTTCCC >site_315 ACACATTGATCTTAG >site_316 GAATATTGATCACCC >site_317 TTTTATCGACCGCTT >site_318 TCATATCGATCGAAG >site_319 TCATATTGATCCTAT >site_320 CAGTATTGATGTATT >site_321 AACAATTGATTTGTC >site_322 ATGTATCGACTGACT >site_323 CCGCATTGATCCACC >site_324 AAACATCGATTAGCT >site_325 CCGCATCGATCCCTC >site_326 ACACATTGATCATTG >site_327 TACTATTGATGGATT >site_328 AATTATTGACCGATG >site_329 GCTGATCGATCTGGC >site_330 CCAGATCGATTTAGT >site_331 GGCCATCGATCATAT >site_332 AGGGATCGATTAGAG >site_333 TCCCATCGATCGCAG >site_334 TTTTATCGATTAGGA >site_335 AGGCATCGATCGTGA >site_336 CGGTATCGATTCAAA >site_337 GAACATCGATTCCTT >site_338 TAGCATCGATCGTGG >site_339 GAAGATCGATTGGCC >site_340 AGATATTGACTTACT >site_341 ATTTATTGATGTGTA >site_342 AGGAATCGATTTTCC >site_343 CCACATCGATCTAAC >site_344 GCTTATCGATCACGG >site_345 TAGGATCGATTACAG >site_346 TACAATCGATTTCCT >site_347 ATAGATCGATTCTGT >site_348 TGTTATTGATGTTAT >site_349 GCTTATCGATCCGGC >site_350 AGGAATCGATTGTAT >site_351 TCACATTGATTGGCA >site_352 TGGTATCGATCCAGA >site_353 AGTAATTGATTAAAT >site_354 TGTGATCGATCAAGG >site_355 TTCCATCGACCTTTT >site_356 GGATATTGATCCTCA >site_357 TTAAATCGATTTTCT >site_358 GTAGATTGATTAAGC >site_359 TCTTATTGATGTGAT >site_360 TCTAATCGATCTGTG >site_361 AATTATCGATGTTCG >site_362 AGTTATCGACTTCAG >site_363 TCACATCGATCAGCC >site_364 CCTAATCGATTAGTT >site_365 AGGAATCGATTCTCT >site_366 ATCCATCGACCGCTC >site_367 TCATATCGATCCTGC >site_368 CTAAATCGATCTCCT >site_369 TGCCATCGATTCAAA >site_370 GCAGATTGATCTAGA >site_371 TGATATTGATCCTGA >site_372 AAATATTGACTGTAT >site_373 TGCTATCGACCTGCC >site_374 CTCTATTGACCTCCA >site_375 TACAATCGATTTCAC >site_376 TTGGATCGATGTGCT >site_377 TCACATCGATCCCAC >site_378 AGTCATTGACTGTCA >site_379 TGGCATTGACTTGAC >site_380 CGTTATCGACCAGCC >site_381 CTGGATTGACCGGAG >site_382 AACTATCGACCCCGC >site_383 GGGTATCGACCACAG >site_384 CAGTATCGACCGAGA >site_385 TTGAATTGACCGACG ; ; Matrix parameters ; Columns 15 ; Rows 4 ; Alphabet a|c|g|t ; Prior a:0.264573486852274|c:0.233031168150323|g:0.239829744535815|t:0.262565600461588 ; program transfac ; matrix.nb 1 ; accession do798+do735_mmus_hnf6_liver_meme_top_m1 ; AC do798+do735_mmus_hnf6_liver_meme_top_m1 ; id do798+do735_mmus_hnf6_liver_meme_top_m1 ; name do798plusdo735_mmus_hnf6_liver_meme_top_m1 ; description atbtATyGATykmyt ; statistical_basis 386 sequences ; sites 386 ; min.prior 0.233031 ; alphabet.size 4 ; max.bits 2 ; total.information 8.52231 ; information.per.column 0.568154 ; max.possible.info.per.col 1.45658 ; consensus.strict atttATtGATttatt ; consensus.strict.rc AATAAATCAATAAAT ; consensus.IUPAC atbtATyGATykmyy ; consensus.IUPAC.rc RRKMRATCRATAVAT ; consensus.regexp at[cgt]tAT[ct]GAT[ct][gt][ac][ct][ct] ; consensus.regexp.rc [AG][AG][GT][AC][AG]ATC[AG]ATA[ACG]AT ; residues.content.crude.freq a:0.2361|c:0.1701|g:0.1798|t:0.4140 ; G+C.content.crude.freq 0.349914 ; residues.content.corrected.freq a:0.2362|c:0.1703|g:0.1799|t:0.4136 ; G+C.content.corrected.freq 0.350231 ; min(P(S|M)) 1.93225e-30 ; max(P(S|M)) 0.000199951 ; proba_range 0.000199951 ; Wmin -47.3 ; Wmax 11.7 ; Wrange 59 ; logo file:/home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do798plusdo735_mmus_hnf6_liver_meme_top_m1//matrix-quality_2014-09-05.235841_do798plusdo735_mmus_hnf6_liver_meme_top_m1_logo_m1.png ; logo file:/home/rsat/rsat/public_html/tmp/wwwrun/2014/09/05/matrix-quality_2014-09-05.235841_QFnNnl/do798plusdo735_mmus_hnf6_liver_meme_top_m1//matrix-quality_2014-09-05.235841_do798plusdo735_mmus_hnf6_liver_meme_top_m1_logo_m1_rc.png ; Host name rsat ; Job started 2014-09-06.002005 ; Job done 2014-09-06.002005 ; Seconds 0.31 ; user 0.31 ; system 0.02 ; cuser 0.32 ; csystem 0.01