This procedure allows the installation of any genome available in a RSAT Web server or genome repository. This is usually the fastest way of getting a genome installed, as this way oligo and dyad frequencies are not computed, they are copied over instead.

To check which servers and repos are available you can:

supported-organisms-server -servers

To find out which genomes are currently available please try:

download-organism -listall

You will get a tabular output where the 1st column is the URL of the RSAT server or genome repository, the 2nd column is the genomeID, the 3rd column is the source of the genome, and the 4th column is the taxonomic classification of the organism:

https://rsat.eead.csic.es/plantsdata/   Actinidia_chinensis.Red5_PS1_1.69.0.60  ensemblgenomes  Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliopsida;eudicotyledons;Gunneridae;Pentapetalae;asterids;Ericales;Actinidiaceae;Actinidia;Actinidia chinensis
https://rsat.eead.csic.es/plantsdata/   Aegilops_tauschii.Aetv4.0.60    ensemblgenomes  Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliophyta;Liliopsida;Poales;Poaceae;BOP clade;Pooideae;Triticodae;Triticeae;Triticinae;Aegilops;Aegilops tauschii
https://rsat.eead.csic.es/plantsdata/   Amborella_trichopoda.AMTR1.0.60 ensemblgenomes  Eukaryota;Viridiplantae;Streptophyta;Embryophyta;Tracheophyta;Spermatophyta;Magnoliopsida;Amborellales;Amborellaceae;Amborella;Amborella trichopoda

You can now install a selected organsm as follows:

download-organism -org Actinidia_chinensis.Red5_PS1_1.69.0.60

The newly installed species will be added to $RSAT/data/supported_organisms.tab and should be listed with the following command-line:

supported-organisms