RSA-tools
- peak-motifs result
Analysis: ChIP-seq_FNR_E._coli_tunned_parameters_dyad_summits_50bps (06/09/2014 01:22)
Input files
motif_db_footprintDB
/vh/rsat/rsat/public_html/data/motif_databases/footprintDB/footprintDB.motif.tf
motif_db_regulonDB
/vh/rsat/rsat/public_html/data/motif_databases/REGULONDB/regulonDB_2014-04-11.tf
test_seq
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/peak-motifspeak_seq
Directories
output
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/
oligos_6nt_mkv2
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/oligos_6nt_mkv2/
oligos_7nt_mkv2
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/oligos_7nt_mkv2/
oligos_8nt_mkv2
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/oligos_8nt_mkv2/
dyads_m1
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/
dyads_m2
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/
dyads_m3
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/
Output files
1nt_test_freq
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab
1nt_test_heatmap
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/composition/peak-motifs_test_heatmap-1str-ovlp_1nt.png
1nt_test_inclusive
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/composition/peak-motifs_test_inclusive-1str-ovlp_1nt.txt
1nt_test_profiles
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab
1nt_test_profiles_graph
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.png
1nt_test_profiles_index
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_graph_index.html
1nt_test_transitions
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab
2nt_test_freq
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab
2nt_test_heatmap
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/composition/peak-motifs_test_heatmap-1str-ovlp_2nt.png
2nt_test_inclusive
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
2nt_test_profiles
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
2nt_test_profiles_graph
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.png
2nt_test_profiles_index
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20_graph_index.html
2nt_test_transitions
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab
archive
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/peak-motifs_archive.zip
dyads
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads.tab
dyads_2pssm
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_log.txt
dyads_asmb
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm.asmb
dyads_m1_logo
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_logo.png
dyads_m1_logo_rc
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_logo_rc.png
dyads_m1_pssm_enrichment
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_scan_mkv1_enrichment.tab
dyads_m1_pssm_enrichment_png
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_scan_mkv1_enrichment.png
dyads_m1_pssm_site_distrib
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_site_distrib.tab
dyads_m1_pssm_site_distrib_graph
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_site_distrib.png
dyads_m1_pssm_sites
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_sites.tab
dyads_m1_pssm_sites_per_peak
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_sites_per_peak.tab
dyads_m1_pssm_sites_per_peak_graph
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_sites_per_peak.png
dyads_m1_tab
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1.tab
dyads_m1_tf
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1.tf
dyads_m1_vs_db_footprintDB
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_footprintDB.tab
dyads_m1_vs_db_footprintDB_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_footprintDB.html
dyads_m1_vs_db_regulonDB
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_regulonDB.tab
dyads_m1_vs_db_regulonDB_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_regulonDB.html
dyads_m1_vs_ref
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_ref.tab
dyads_m1_vs_ref_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_ref.html
dyads_m2_logo
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_logo.png
dyads_m2_logo_rc
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_logo_rc.png
dyads_m2_pssm_enrichment
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_scan_mkv1_enrichment.tab
dyads_m2_pssm_enrichment_png
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_scan_mkv1_enrichment.png
dyads_m2_pssm_site_distrib
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_site_distrib.tab
dyads_m2_pssm_site_distrib_graph
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_site_distrib.png
dyads_m2_pssm_sites
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_sites.tab
dyads_m2_pssm_sites_per_peak
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_sites_per_peak.tab
dyads_m2_pssm_sites_per_peak_graph
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_sites_per_peak.png
dyads_m2_tab
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2.tab
dyads_m2_tf
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2.tf
dyads_m2_vs_db_footprintDB
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_vs_db_footprintDB.tab
dyads_m2_vs_db_footprintDB_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_vs_db_footprintDB.html
dyads_m2_vs_db_regulonDB
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_vs_db_regulonDB.tab
dyads_m2_vs_db_regulonDB_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_vs_db_regulonDB.html
dyads_m2_vs_ref
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_vs_ref.tab
dyads_m2_vs_ref_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_vs_ref.html
dyads_m3_logo
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_logo.png
dyads_m3_logo_rc
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_logo_rc.png
dyads_m3_pssm_enrichment
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_scan_mkv1_enrichment.tab
dyads_m3_pssm_enrichment_png
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_scan_mkv1_enrichment.png
dyads_m3_pssm_site_distrib
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_site_distrib.tab
dyads_m3_pssm_site_distrib_graph
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_site_distrib.png
dyads_m3_pssm_sites
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_sites.tab
dyads_m3_pssm_sites_per_peak
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_sites_per_peak.tab
dyads_m3_pssm_sites_per_peak_graph
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_sites_per_peak.png
dyads_m3_tab
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3.tab
dyads_m3_tf
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dyads_m3_vs_db_footprintDB
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_footprintDB.tab
dyads_m3_vs_db_footprintDB_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_footprintDB.html
dyads_m3_vs_db_regulonDB
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_regulonDB.tab
dyads_m3_vs_db_regulonDB_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_regulonDB.html
dyads_m3_vs_ref
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_ref.tab
dyads_m3_vs_ref_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_ref.html
dyads_pssm_counts
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
dyads_pssm_logo1
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m1.png
dyads_pssm_logo2
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m2.png
dyads_pssm_logo3
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m3.png
dyads_pssm_logo4
/vh/rsat/rsat/public_html/tmp/apache/2014/09/06/peak-motifs.2014-09-06.011249_2014-09-06.011249_H1RYPN/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m4.png
dyads_pssm_logo5
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