RSA-tools
- peak-motifs result
Analysis: FNR_original_sequences_ (05/09/2014 19:53)
Input files
motif_db_jaspar_core_vertebrates
/vh/rsat/rsat/public_html/data/motif_databases/JASPAR/jaspar_core_vertebrates_2013-11.tf
test_seq
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/peak-motifspeak_seq
Directories
output
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/
oligos_6nt_mkv3
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/
positions_6nt_m1
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_6nt_m1/
positions_6nt_m2
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_6nt_m2/
positions_7nt_m1
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_7nt_m1/
positions_7nt_m2
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_7nt_m2/
positions_7nt_m3
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_7nt_m3/
positions_7nt_m4
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_7nt_m4/
positions_7nt_m5
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_7nt_m5/
positions_8nt_m1
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_8nt_m1/
positions_8nt_m2
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_8nt_m2/
positions_8nt_m3
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_8nt_m3/
positions_8nt_m4
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_8nt_m4/
positions_8nt_m5
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/positions_8nt_m5/
Output files
1nt_test_freq
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab
1nt_test_heatmap
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_heatmap-1str-ovlp_1nt.png
1nt_test_inclusive
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_inclusive-1str-ovlp_1nt.txt
1nt_test_profiles
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab
1nt_test_profiles_graph
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.png
1nt_test_profiles_index
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_graph_index.html
1nt_test_transitions
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab
2nt_test_freq
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab
2nt_test_heatmap
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_heatmap-1str-ovlp_2nt.png
2nt_test_inclusive
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
2nt_test_profiles
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
2nt_test_profiles_graph
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.png
2nt_test_profiles_index
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20_graph_index.html
2nt_test_transitions
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab
archive
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/peak-motifs_archive.zip
links
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/reports/peak-motifs_links.html
log
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/reports/peak-motifs_log.txt
merged_sites
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/sites/peak-motifs_all_motifs_seqcoord.tab
merged_sites_bed
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/sites/peak-motifs_all_motifs_seqcoord.bed
merged_words
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/merged_words/peak-motifs_merged_words.tab
merged_words_heatmap
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/merged_words/peak-motifs_merged_words_heatmap.png
merged_words_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/merged_words/peak-motifs_merged_words.html
motifs_disco_compa
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
motifs_disco_compa_alignments_1ton
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
motifs_disco_compa_alignments_1ton_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
motifs_disco_compa_gml
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/peak-motifs_motifs_disco_compa.gml
motifs_disco_compa_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
motifs_discovered
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/peak-motifs_motifs_discovered.tf
motifs_discovered_table
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/peak-motifs_motifs_discovered_table.tab
motifs_vs_db_jaspar_core_vertebrates
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_core_vertebrates.tab
motifs_vs_db_jaspar_core_vertebrates_alignments_1ton
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_core_vertebrates_alignments_1ton.tab
motifs_vs_db_jaspar_core_vertebrates_alignments_1ton_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_core_vertebrates_alignments_1ton.html
motifs_vs_db_jaspar_core_vertebrates_gml
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_core_vertebrates.gml
motifs_vs_db_jaspar_core_vertebrates_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_core_vertebrates.html
oligos_6nt_mkv3
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3.tab
oligos_6nt_mkv3_2pssm
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_log.txt
oligos_6nt_mkv3_asmb
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm.asmb
oligos_6nt_mkv3_logo
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/peak-motifs_oligos_6nt_mkv3_logo.png
oligos_6nt_mkv3_logo_rc
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/peak-motifs_oligos_6nt_mkv3_logo_rc.png
oligos_6nt_mkv3_pssm_counts
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_count_matrices.txt
oligos_6nt_mkv3_pssm_enrichment
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/peak-motifs_oligos_6nt_mkv3_scan_mkv1_enrichment.tab
oligos_6nt_mkv3_pssm_enrichment_png
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/peak-motifs_oligos_6nt_mkv3_scan_mkv1_enrichment.png
oligos_6nt_mkv3_pssm_logo1
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_count_matrices_logo_m1.png
oligos_6nt_mkv3_pssm_logo2
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_count_matrices_logo_m2.png
oligos_6nt_mkv3_pssm_logo3
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_count_matrices_logo_m3.png
oligos_6nt_mkv3_pssm_logo4
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_count_matrices_logo_m4.png
oligos_6nt_mkv3_pssm_logo5
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_count_matrices_logo_m5.png
oligos_6nt_mkv3_pssm_logo_rc1
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_count_matrices_logo_m1_rc.png
oligos_6nt_mkv3_pssm_logo_rc2
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_count_matrices_logo_m2_rc.png
oligos_6nt_mkv3_pssm_logo_rc3
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_count_matrices_logo_m3_rc.png
oligos_6nt_mkv3_pssm_logo_rc4
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_count_matrices_logo_m4_rc.png
oligos_6nt_mkv3_pssm_logo_rc5
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_count_matrices_logo_m5_rc.png
oligos_6nt_mkv3_pssm_sig
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_sig_matrices.tf
oligos_6nt_mkv3_pssm_site_distrib
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/peak-motifs_oligos_6nt_mkv3_site_distrib.tab
oligos_6nt_mkv3_pssm_site_distrib_graph
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/peak-motifs_oligos_6nt_mkv3_site_distrib.png
oligos_6nt_mkv3_pssm_sites
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/peak-motifs_oligos_6nt_mkv3_sites.tab
oligos_6nt_mkv3_pssm_sites_per_peak
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/peak-motifs_oligos_6nt_mkv3_sites_per_peak.tab
oligos_6nt_mkv3_pssm_sites_per_peak_graph
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/peak-motifs_oligos_6nt_mkv3_sites_per_peak.png
oligos_6nt_mkv3_pssm_tf
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_count_matrices.tf
oligos_6nt_mkv3_tab
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/peak-motifs_oligos_6nt_mkv3.tab
oligos_6nt_mkv3_tf
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/peak-motifs_oligos_6nt_mkv3.tf
oligos_6nt_mkv3_vs_db_jaspar_core_vertebrates
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/peak-motifs_oligos_6nt_mkv3_vs_db_jaspar_core_vertebrates.tab
oligos_6nt_mkv3_vs_db_jaspar_core_vertebrates_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/peak-motifs_oligos_6nt_mkv3_vs_db_jaspar_core_vertebrates.html
oligos_6nt_mkv3_vs_ref
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/peak-motifs_oligos_6nt_mkv3_vs_ref.tab
oligos_6nt_mkv3_vs_ref_html
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/discovered_motifs/oligos_6nt_mkv3/peak-motifs_oligos_6nt_mkv3_vs_ref.html
oligos_7nt_mkv4
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4.tab
oligos_7nt_mkv4_2pssm
/vh/rsat/rsat/public_html/tmp/apache/2014/09/05/peak-motifs.2014-09-05.194903_2014-09-05.194903_oebJl9/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_log.txt
oligos_7nt_mkv4_asmb
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oligos_7nt_mkv4_pssm_counts
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positions_8nt_pssm_logo_rc1
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positions_8nt_pssm_logo_rc5
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test_seqlen_distrib
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timelog
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timelog_html
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timetable
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