peak-motifs CEBPa_ChIP-seq_in_dog

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

rkATTGTGCAATCay

RTGATTGCACAATMY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkATTGTGCAATCay

CEBPA MA0102.3 R 11 0.7333 0.948 0.695 .kATTGTGCAAT... KRTTRTGCAAT

CEBPB MA0466.1 R 11 0.7333 0.924 0.678 ..ATTGTGCAATC.. RTKRTGCAATM

Sox17 MA0078.1 D 8 0.5000 0.861 0.431 dkATTGTG....... .hyATTGTs

Total maches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8794 (20.43%)
Max nb of predicted sites per peak: 7
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

waCAAAACaa

TTGTTTTGTW

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor waCAAAACaa

Sox5 MA0087.1 R 6 0.5455 0.767 0.418 ....AAACwa WAACAA.

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5107 (11.87%)
Max nb of predicted sites per peak: 8
(canFam2_chr1_60895336_60895653_+)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

ssCTGCAGss

SSCTGCAGSS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCTGCAGss

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3779 (8.78%)
Max nb of predicted sites per peak: 6
(canFam2_chr5_68686023_68686694_+)
Mean nb of predicted sites per peak: 2.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

ttTTCTTTTCTty

RAAGAAAAGAAAA

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ttTTCTTTTCTty

Gata1 MA0035.3 D 11 0.8462 0.767 0.649 ..TTCTTTTCTtt tyCTTATCTsy

Gata4 MA0482.1 D 10 0.7143 0.757 0.541 ...TCTTTTCTtt yCTTATCTsy.

GATA3 MA0037.2 R 8 0.6154 0.787 0.484 ...TCTTTTCT.. TYTTATCT

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1925 (4.47%)
Max nb of predicted sites per peak: 10
(canFam2_chr9_18368027_18368369_+)
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

rtGATTGCACAAChc

GDGTTGTGCAATCAY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rtGATTGCACAAChc

CEBPA MA0102.3 D 11 0.7333 0.936 0.687 ...ATTGCACAACw. aTTGCAyAAym

CEBPB MA0466.1 D 11 0.7333 0.887 0.650 ..GATTGCACAAC.. kATTGCAymAy

BRCA1 MA0133.1 D 7 0.4667 0.871 0.406 ........ACAACwy mCAAcms

Total maches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7650 (17.77%)
Max nb of predicted sites per peak: 7
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.03

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

arAGATTGTGAAAtm

KATTTCACAATCTYT

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor arAGATTGTGAAAtm

CEBPB MA0466.1 R 11 0.7333 0.848 0.622 ....ATTGTGAAAtm RTKRTGCAATM

CEBPA MA0102.3 R 11 0.7333 0.847 0.621 ...GATTGTGAAAt. KRTTRTGCAAT

CEBPA MA0102.2 R 9 0.6000 0.836 0.502 ....ATTGTGAAA.. RTTGCRMAA

Total maches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5603 (13.02%)
Max nb of predicted sites per peak: 7
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

rkATTACGCAAGAsa

TSTCTTGCGTAATMY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkATTACGCAAGAsa

Cebpa MA0102.1 D 12 0.8000 0.760 0.608 ...TTACGCAAGArw TtkygCAAyvyb

CEBPA MA0102.2 D 9 0.6000 0.819 0.491 ...TTACGCAAG... TtkygCAAy

Total maches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4729 (10.99%)
Max nb of predicted sites per peak: 3
(canFam2_chr16_60885440_60885701_+)
Mean nb of predicted sites per peak: 1.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

vmAGTTGCAAAay

RTTTTGCAACTKB

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vmAGTTGCAAAay

CEBPA MA0102.3 D 10 0.7143 0.769 0.549 ...GTTGCAAAay aTTGCAyAAy.

Myb MA0100.1 D 7 0.5000 0.807 0.403 rmAGTTG...... .rCvGTTG

CEBPA MA0102.2 R 9 0.6923 0.759 0.525 ...GTTGCAAAa. RTTGCRMAA

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 596 (1.38%)
Max nb of predicted sites per peak: 2
(canFam2_chr9_62259069_62259303_+)
Mean nb of predicted sites per peak: 1.02

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

rsaTGTTGCACAACAGys

SRCTGTTGTGCAACATSY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsaTGTTGCACAACAGys

CEBPA MA0102.3 D 11 0.6111 0.830 0.507 ....GTTGCACAACA... aTTGCAyAAym

CEBPB MA0466.1 D 11 0.6111 0.788 0.482 ...TGTTGCACAAC.... kATTGCAymAy

Cebpa MA0102.1 R 12 0.6667 0.751 0.501 .vATGTTGCACAA..... VRBRTTGCRMAA

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2057 (4.78%)
Max nb of predicted sites per peak: 2
(canFam2_chrX_38314434_38314806_+)
Mean nb of predicted sites per peak: 1.01

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

TyTTTTcTTTTTTaAArwAAATms

SKATTTWYTTTAAAAAAGAAAARA

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TyTTTTcTTTTTTaAArwAAATms

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1913 (4.44%)
Max nb of predicted sites per peak: 11
(canFam2_chr1_22832108_22832501_+)
Mean nb of predicted sites per peak: 1.54

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m1

wkATTGCACAATChy

RDGATTGTGCAATMW

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wkATTGCACAATChy

CEBPB MA0466.1 D 11 0.7333 0.934 0.685 .kATTGCACAAT... kATTGCAymAy

CEBPA MA0102.3 D 11 0.7333 0.935 0.685 ..ATTGCACAATc.. aTTGCAyAAym

Cebpa MA0102.1 D 12 0.8000 0.797 0.637 ...TTGCACAATcwy TtkygCAAyvyb

Total maches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8478 (19.70%)
Max nb of predicted sites per peak: 7
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m2

tyATTTTTAArw

WYTTAAAAATRA

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tyATTTTTAArw

ARID3A MA0151.1 R 6 0.5000 0.820 0.410 .....TTTAAa. TTTRAT

MEF2C MA0497.1 R 12 0.8000 0.751 0.601 wwATTTTTAAaw ..CTATTTTTRGMH.

Total maches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2502 (5.81%)
Max nb of predicted sites per peak: 3
(canFam2_chr6_26084946_26085340_+)
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv5_m3

drTTACACAAymm

KKRTTGTGTAAYH

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor drTTACACAAymm

HLF MA0043.1 D 12 0.9231 0.788 0.727 wrTTACACAAtw. krTTACryAAth

CEBPA MA0102.3 D 11 0.8462 0.790 0.669 .rTTACACAAtw. aTTGCAyAAym

Sox17 MA0078.1 R 8 0.5714 0.799 0.456 .....CACAAtww SACAATRD.

Total maches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3340 (7.76%)
Max nb of predicted sites per peak: 3
(canFam2_chr9_62979957_62980307_+)
Mean nb of predicted sites per peak: 1.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv5_m4

aaACAAAAACaa

TTGTTTTTGTTT

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aaACAAAAACaa

SRY MA0084.1 D 7 0.5000 0.848 0.424 aaACAAA..... ..waACAAw

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1111 (2.58%)
Max nb of predicted sites per peak: 3
(canFam2_chr7_34384959_34385369_+)
Mean nb of predicted sites per peak: 1.06

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv5_m5

krTTGCTCAAym

KRTTGAGCAAYM

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krTTGCTCAAym

CEBPA MA0102.3 D 11 0.9167 0.803 0.736 .rTTGCTCAAya aTTGCAyAAym

CEBPB MA0466.1 D 11 0.9167 0.779 0.714 wrTTGCTCAAy. kATTGCAymAy

CEBPA MA0102.2 R 9 0.7500 0.784 0.588 .rTTGCTCAA.. RTTGCRMAA

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2729 (6.34%)
Max nb of predicted sites per peak: 3
(canFam2_chr3_94283072_94283480_+)
Mean nb of predicted sites per peak: 1.03

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

kkATTTCACAATChy

RDGATTGTGAAATMM

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kkATTTCACAATChy

CEBPB MA0466.1 D 11 0.7333 0.862 0.632 .tATTTCACAAT... kATTGCAymAy

CEBPA MA0102.3 D 11 0.7333 0.858 0.629 ..ATTTCACAATC.. aTTGCAyAAym

Cebpa MA0102.1 D 12 0.8000 0.813 0.650 ...TTTCACAATCwh TtkygCAAyvyb

Total maches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6634 (15.41%)
Max nb of predicted sites per peak: 7
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

svAGATTGCACAACTsy

RSAGTTGTGCAATCTBS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor svAGATTGCACAACTsy

CEBPA MA0102.3 D 11 0.6471 0.886 0.573 ....ATTGCACAACT.. aTTGCAyAAym

CEBPB MA0466.1 D 11 0.6471 0.875 0.566 ...GATTGCACAAC... kATTGCAymAy

Cebpa MA0102.1 R 12 0.7059 0.811 0.572 .mAGATTGCACAA.... VRBRTTGCRMAA

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4033 (9.37%)
Max nb of predicted sites per peak: 3
(canFam2_chrX_103730010_103730445_+)
Mean nb of predicted sites per peak: 1.01

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

rsAGATTGCGAAATva

TBATTTCGCAATCTSY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsAGATTGCGAAATva

CEBPA MA0102.2 R 9 0.5625 0.914 0.514 ....ATTGCGAAA... RTTGCRMAA

Cebpa MA0102.1 R 12 0.7500 0.876 0.657 .rAGATTGCGAAA... VRBRTTGCRMAA

CEBPA MA0102.3 D 11 0.6875 0.763 0.524 ....ATTGCGAAATr. aTTGCAyAAym

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4024 (9.35%)
Max nb of predicted sites per peak: 3
(canFam2_chr24_45027355_45027787_+)
Mean nb of predicted sites per peak: 1.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

rrATGATGCAACCAsw

WSTGGTTGCATCATYY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrATGATGCAACCAsw

CEBPB MA0466.1 R 11 0.6875 0.804 0.553 ..ATGATGCAACC... RTKRTGCAATM

CEBPA MA0102.3 R 11 0.6875 0.776 0.534 .rATGATGCAAC.... KRTTRTGCAAT

Total maches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2957 (6.87%)
Max nb of predicted sites per peak: 4
(canFam2_chr12_9970619_9971249_+)
Mean nb of predicted sites per peak: 1.02

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

kcCTCTTGCACAACTsy

RSAGTTGTGCAAGAGGM

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kcCTCTTGCACAACTsy

CEBPA MA0102.3 D 11 0.6471 0.811 0.525 ....CTTGCACAACT.. aTTGCAyAAym

CEBPB MA0466.1 D 11 0.6471 0.791 0.512 ...TCTTGCACAAC... kATTGCAymAy

CEBPA MA0102.2 D 9 0.5294 0.774 0.410 .....TTGCACAAC... TtkygCAAy

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2639 (6.13%)
Max nb of predicted sites per peak: 3
(canFam2_chr1_35972194_35972660_+)
Mean nb of predicted sites per peak: 1.02

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 oligos_8nt_mkv6_m1

atGGTTGCACAACac

GTGTTGTGCAACCAT

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atGGTTGCACAACac

CEBPA MA0102.3 D 11 0.7333 0.882 0.647 ...GTTGCACAACw. aTTGCAyAAym

BRCA1 MA0133.1 D 7 0.4667 0.874 0.408 ........ACAACwh mCAAcms

CEBPB MA0466.1 D 11 0.7333 0.823 0.604 ..GGTTGCACAAC.. kATTGCAymAy

Total maches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6229 (14.47%)
Max nb of predicted sites per peak: 7
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 22 oligos_8nt_mkv6_m2

rkaTTGTGAAATmh

DKATTTCACAATMY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkaTTGTGAAATmh

CEBPA MA0102.3 R 11 0.7857 0.879 0.691 .kATTGTGAAAT.. KRTTRTGCAAT

Sox17 MA0078.1 D 8 0.5333 0.852 0.454 wkATTGTG...... .hyATTGTs

CEBPB MA0466.1 R 11 0.7857 0.860 0.676 ..ATTGTGAAATa. RTKRTGCAATM

Total maches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9103 (21.15%)
Max nb of predicted sites per peak: 7
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 23 oligos_8nt_mkv6_m3

rtATTGaGCAATay

RTATTGCTCAATAY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rtATTGaGCAATay

CEBPA MA0102.3 R 11 0.7857 0.875 0.687 .tATTGAGCAAT.. KRTTRTGCAAT

CEBPB MA0466.1 R 11 0.7857 0.870 0.683 ..ATTGAGCAATa. RTKRTGCAATM

Cebpa MA0102.1 D 11 0.7333 0.828 0.607 ...TTGAGCAATaw TtkygCAAyvy.

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8838 (20.54%)
Max nb of predicted sites per peak: 7
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 24 oligos_8nt_mkv6_m4

krTTACACAAtmy

RKATTGTGTAAYM

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krTTACACAAtmy

HLF MA0043.1 D 12 0.9231 0.859 0.793 wrTTACACAATa. krTTACryAAth

CEBPA MA0102.3 D 11 0.8462 0.809 0.685 .rTTACACAATa. aTTGCAyAAym

Cebpa MA0102.1 D 11 0.7857 0.808 0.634 ..TTACACAATah TtkygCAAyvy.

Total maches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4206 (9.77%)
Max nb of predicted sites per peak: 3
(canFam2_chr9_62979957_62980307_+)
Mean nb of predicted sites per peak: 1.06

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 25 oligos_8nt_mkv6_m5

yvTTGCCCAAbr

YVTTGGGCAABR

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yvTTGCCCAAbr

CEBPA MA0102.3 D 11 0.9167 0.797 0.730 .mTTGCCCAAya aTTGCAyAAym

CEBPB MA0466.1 D 11 0.9167 0.761 0.698 wmTTGCCCAAy. kATTGCAymAy

CEBPA MA0102.2 R 9 0.7500 0.783 0.587 .mTTGCCCAA.. RTTGCRMAA

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2529 (5.88%)
Max nb of predicted sites per peak: 3
(canFam2_chr7_82962719_82963176_+)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 26 positions_8nt_m1

rvAGATTGCAAAAChv

BDGTTTTGCAATCTBY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvAGATTGCAAAAChv

CEBPA MA0102.3 D 11 0.6875 0.888 0.610 ....ATTGCAAAACw. aTTGCAyAAym

CEBPA MA0102.2 R 9 0.5625 0.861 0.484 ....ATTGCAAAA... RTTGCRMAA

Cebpa MA0102.1 R 12 0.7500 0.833 0.624 .mAGATTGCAAAA... VRBRTTGCRMAA

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4381 (10.18%)
Max nb of predicted sites per peak: 3
(canFam2_chr19_6671590_6671842_+)
Mean nb of predicted sites per peak: 1.03

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 27 positions_8nt_m2

skGTTGaGCAATss

SSATTGCTCAACMS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor skGTTGaGCAATss

Cebpa MA0102.1 D 11 0.7333 0.825 0.605 ...TTGAGCAATmw TtkygCAAyvy.

BRCA1 MA0133.1 R 7 0.5000 0.857 0.428 mtGTTGA....... SKGTTGK

CEBPA MA0102.2 D 9 0.6429 0.835 0.537 ...TTGAGCAAT.. TtkygCAAy

Total maches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4612 (10.72%)
Max nb of predicted sites per peak: 3
(canFam2_chrX_74592352_74592783_+)
Mean nb of predicted sites per peak: 1.06

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 28 positions_8nt_m3

vgTGATTGTGCAAGas

STCTTGCACAATCACB

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vgTGATTGTGCAAGas

CEBPB MA0466.1 R 11 0.6875 0.870 0.598 ....ATTGTGCAAga. RTKRTGCAATM

CEBPA MA0102.3 R 11 0.6875 0.861 0.592 ...GATTGTGCAAg.. KRTTRTGCAAT

Cebpa MA0102.1 D 11 0.6471 0.780 0.505 .....TTGTGCAAgad TtkygCAAyvy.

Total maches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4387 (10.19%)
Max nb of predicted sites per peak: 7
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.02

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 29 positions_8nt_m4

rkaTTGCCCAAtmy

RKATTGGGCAATMY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkaTTGCCCAAtmy

CEBPA MA0102.3 D 11 0.7857 0.844 0.663 ..ATTGCCCAATa. aTTGCAyAAym

CEBPB MA0466.1 D 11 0.7857 0.829 0.652 .tATTGCCCAAT.. kATTGCAymAy

CEBPA MA0102.2 R 9 0.6429 0.827 0.531 ..ATTGCCCAA... RTTGCRMAA

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4932 (11.46%)
Max nb of predicted sites per peak: 7
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 30 positions_8nt_m5

gaTGGTTGCACAAyAst

ASTRTTGTGCAACCATC

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gaTGGTTGCACAAyAst

CEBPA MA0102.3 D 11 0.6471 0.872 0.564 ....GTTGCACAAyA.. aTTGCAyAAym

CEBPB MA0466.1 D 11 0.6471 0.825 0.534 ...GGTTGCACAAy... kATTGCAymAy

Cebpa MA0102.1 D 12 0.7059 0.770 0.544 .....TTGCACAAyAwt TtkygCAAyvyb

Total maches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2788 (6.48%)
Max nb of predicted sites per peak: 3
(canFam2_chr17_61878241_61878691_+)
Mean nb of predicted sites per peak: 1.01

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus jaspar_core_vertebrates database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSA-tools - peak-motifs result

Analysis: CEBPa_ChIP-seq_in_dog_liver (03/09/2014 10:36)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor waCAAAACaa

Sox5 MA0087.1 R 6 0.5455 0.767 0.418 ....AAACwa WAACAA.

Total maches= 1

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCTGCAGss

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TyTTTTcTTTTTTaAArwAAATms

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aaACAAAAACaa

SRY MA0084.1 D 7 0.5000 0.848 0.424 aaACAAA..... ..waACAAw

Total maches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSA-tools - peak-motifs result

Analysis: CEBPa_ChIP-seq_in_dog_liver (03/09/2014 10:36)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor waCAAAACaa Sox5 MA0087.1 R 6 0.5455 0.767 0.418 ....AAACwa WAACAA. Total maches= 1

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssCTGCAGss Total maches= 0

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor TyTTTTcTTTTTTaAArwAAATms Total maches= 0

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor tyATTTTTAArw ARID3A MA0151.1 R 6 0.5000 0.820 0.410 .....TTTAAa. TTTRAT MEF2C MA0497.1 R 12 0.8000 0.751 0.601 wwATTTTTAAaw ..CTATTTTTRGMH. Total maches= 2

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor aaACAAAAACaa SRY MA0084.1 D 7 0.5000 0.848 0.424 aaACAAA..... ..waACAAw Total maches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor waCAAAACaa

Sox5 MA0087.1 R 6 0.5455 0.767 0.418 ....AAACwa WAACAA.

Total maches= 1

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCTGCAGss

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TyTTTTcTTTTTTaAArwAAATms

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aaACAAAAACaa

SRY MA0084.1 D 7 0.5000 0.848 0.424 aaACAAA..... ..waACAAw

Total maches= 1