peak-motifs CEBPa_ChIP-seq_in_dog_liver_test

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

rkATTGTGCAATCay

RTGATTGCACAATMY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkATTGTGCAATCay

CEBPA MA0102.3 R 11 0.7333 0.948 0.695 .kATTGTGCAAT... KRTTRTGCAAT

CEBPB MA0466.1 R 11 0.7333 0.924 0.678 ..ATTGTGCAATC.. RTKRTGCAATM

Sox17 MA0078.1 D 8 0.5000 0.861 0.431 dkATTGTG....... .hyATTGTs

Total maches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkATTGTGCAATCay

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 R 11 0.7333 0.923 0.677 .kATTGTGCAAT... KRTKGTGCAAY

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8747 (20.32%)
Max nb of predicted sites per peak: 6
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.04

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

waCAAAACaa

TTGTTTTGTW

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor waCAAAACaa

Sox5 MA0087.1 R 6 0.5455 0.766 0.418 ....AAACww WAACAA.

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor waCAAAACaa

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4902 (11.39%)
Max nb of predicted sites per peak: 8
(canFam2_chr1_60895336_60895653_+)
Mean nb of predicted sites per peak: 1.17

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

ssCTGCAGss

SSCTGCAGSS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCTGCAGss

Total maches= 0

No match

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCTGCAGss

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3672 (8.53%)
Max nb of predicted sites per peak: 6
(canFam2_chr5_17972887_17973281_+)
Mean nb of predicted sites per peak: 2.13

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

ttTTCTTTTCTty

RAAGAAAAGAAAA

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ttTTCTTTTCTty

Gata1 MA0035.3 D 11 0.8462 0.767 0.649 ..TTCTTTTCTtt tyCTTATCTsy

Gata4 MA0482.1 D 10 0.7143 0.757 0.541 ...TCTTTTCTtt yCTTATCTsy.

GATA3 MA0037.2 R 8 0.6154 0.787 0.484 ...TCTTTTCT.. TYTTATCT

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ttTTCTTTTCTty

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1882 (4.37%)
Max nb of predicted sites per peak: 10
(canFam2_chr9_18368027_18368369_+)
Mean nb of predicted sites per peak: 1.08

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

atGATTGCACAAChc

GDGTTGTGCAATCAT

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atGATTGCACAAChc

CEBPA MA0102.3 D 11 0.7333 0.936 0.687 ...ATTGCACAACw. aTTGCAyAAym

CEBPB MA0466.1 D 11 0.7333 0.887 0.650 ..GATTGCACAAC.. kATTGCAymAy

BRCA1 MA0133.1 D 7 0.4667 0.871 0.406 ........ACAACwy mCAAcms

Total maches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atGATTGCACAAChc

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.7333 0.926 0.679 ...ATTGCACAACw. rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7611 (17.68%)
Max nb of predicted sites per peak: 6
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.02

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

arAGATTGTGAAAtm

KATTTCACAATCTYT

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor arAGATTGTGAAAtm

CEBPB MA0466.1 R 11 0.7333 0.845 0.620 ....ATTGTGAAAtm RTKRTGCAATM

CEBPA MA0102.3 R 11 0.7333 0.845 0.619 ...GATTGTGAAAt. KRTTRTGCAAT

CEBPA MA0102.2 R 9 0.6000 0.835 0.501 ....ATTGTGAAA.. RTTGCRMAA

Total maches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor arAGATTGTGAAAtm

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 R 11 0.7333 0.795 0.583 ...GATTGTGAAAt. KRTKGTGCAAY

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5445 (12.65%)
Max nb of predicted sites per peak: 6
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.03

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

rkATTACGCAAGAsr

YSTCTTGCGTAATMY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkATTACGCAAGAsr

Cebpa MA0102.1 D 12 0.8000 0.760 0.608 ...TTACGCAAGArw TtkygCAAyvyb

CEBPA MA0102.2 D 9 0.6000 0.819 0.492 ...TTACGCAAG... TtkygCAAy

Total maches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkATTACGCAAGAsr

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 R 11 0.7333 0.768 0.563 .kATTACGCAAG... KRTKGTGCAAY

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4706 (10.93%)
Max nb of predicted sites per peak: 3
(canFam2_chr16_60885440_60885701_+)
Mean nb of predicted sites per peak: 1.05

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

vmAGTTGCAAAay

RTTTTGCAACTKB

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vmAGTTGCAAAay

CEBPA MA0102.3 D 10 0.7143 0.770 0.550 ...GTTGCAAAay aTTGCAyAAy.

Myb MA0100.1 D 7 0.5000 0.807 0.404 rmAGTTG...... .rCvGTTG

CEBPA MA0102.2 R 9 0.6923 0.760 0.526 ...GTTGCAAAa. RTTGCRMAA

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vmAGTTGCAAAay

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 10 0.7143 0.782 0.558 ...GTTGCAAAay rTTGCacMAy.

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 586 (1.36%)
Max nb of predicted sites per peak: 2
(canFam2_chr9_62259069_62259303_+)
Mean nb of predicted sites per peak: 1.02

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

rsaTGTTGCACAACAGts

SACTGTTGTGCAACATSY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsaTGTTGCACAACAGts

CEBPA MA0102.3 D 11 0.6111 0.830 0.507 ....GTTGCACAACA... aTTGCAyAAym

CEBPB MA0466.1 D 11 0.6111 0.788 0.482 ...TGTTGCACAAC.... kATTGCAymAy

Cebpa MA0102.1 R 12 0.6667 0.751 0.500 .sATGTTGCACAA..... VRBRTTGCRMAA

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsaTGTTGCACAACAGts

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.6111 0.855 0.522 ....GTTGCACAACA... rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2012 (4.67%)
Max nb of predicted sites per peak: 2
(canFam2_chrX_38314434_38314806_+)
Mean nb of predicted sites per peak: 1.01

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

TtTTTTyTTTTTTwAArwAAATms

SKATTTWYTTWAAAAAARAAAAAA

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TtTTTTyTTTTTTwAArwAAATms

Total maches= 0

No match

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TtTTTTyTTTTTTwAArwAAATms

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1834 (4.26%)
Max nb of predicted sites per peak: 10
(canFam2_chr8_69642555_69642622_+)
Mean nb of predicted sites per peak: 1.47

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m1

tkaTTGCACAAYmc

GKRTTGTGCAATMA

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tkaTTGCACAAYmc

CEBPA MA0102.3 D 11 0.7857 0.947 0.744 ..ATTGCACAAyw. aTTGCAyAAym

CEBPB MA0466.1 D 11 0.7857 0.919 0.722 .kATTGCACAAy.. kATTGCAymAy

BRCA1 MA0133.1 D 7 0.5000 0.841 0.421 .......ACAAywh mCAAcms

Total maches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tkaTTGCACAAYmc

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.7857 0.944 0.741 ..ATTGCACAAyw. rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7533 (17.50%)
Max nb of predicted sites per peak: 6
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.06

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m2

yyATTTTTAAaw

WTTTAAAAATRR

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyATTTTTAAaw

ARID3A MA0151.1 R 6 0.5000 0.821 0.410 .....TTTAAa. TTTRAT

MEF2C MA0497.1 R 12 0.8000 0.752 0.601 wwATTTTTAAaw ..CTATTTTTRGMH.

Total maches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyATTTTTAAaw

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2413 (5.61%)
Max nb of predicted sites per peak: 3
(canFam2_chr6_26084946_26085340_+)
Mean nb of predicted sites per peak: 1.07

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv5_m3

krTTACACAAym

KRTTGTGTAAYM

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krTTACACAAym

HLF MA0043.1 D 12 1.0000 0.806 0.806 wrTTACACAAya krTTACryAAth

CEBPA MA0102.3 D 11 0.9167 0.806 0.738 .rTTACACAAya aTTGCAyAAym

SOX10 MA0442.1 R 6 0.5000 0.842 0.421 ......ACAAya ACAAWG

Total maches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krTTACACAAym

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.9167 0.795 0.729 .rTTACACAAya rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3449 (8.01%)
Max nb of predicted sites per peak: 3
(canFam2_chr9_62979957_62980307_+)
Mean nb of predicted sites per peak: 1.02

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv5_m4

aaACAAAAACaa

TTGTTTTTGTTT

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aaACAAAAACaa

SRY MA0084.1 D 7 0.5000 0.847 0.424 aaACAAA..... ..waACAAw

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aaACAAAAACaa

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1082 (2.51%)
Max nb of predicted sites per peak: 3
(canFam2_chr7_34384959_34385369_+)
Mean nb of predicted sites per peak: 1.06

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv5_m5

krTTGCTCAAym

KRTTGAGCAAYM

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krTTGCTCAAym

CEBPA MA0102.3 D 11 0.9167 0.803 0.736 .rTTGCTCAAya aTTGCAyAAym

CEBPB MA0466.1 D 11 0.9167 0.780 0.715 wrTTGCTCAAy. kATTGCAymAy

CEBPA MA0102.2 R 9 0.7500 0.784 0.588 .rTTGCTCAA.. RTTGCRMAA

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krTTGCTCAAym

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.9167 0.847 0.776 .rTTGCTCAAya rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2695 (6.26%)
Max nb of predicted sites per peak: 3
(canFam2_chr3_94283072_94283480_+)
Mean nb of predicted sites per peak: 1.03

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

kkATTTCACAATChy

RDGATTGTGAAATMM

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kkATTTCACAATChy

CEBPB MA0466.1 D 11 0.7333 0.862 0.632 .tATTTCACAAT... kATTGCAymAy

CEBPA MA0102.3 D 11 0.7333 0.858 0.629 ..ATTTCACAATC.. aTTGCAyAAym

Cebpa MA0102.1 D 12 0.8000 0.813 0.650 ...TTTCACAATCwy TtkygCAAyvyb

Total maches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kkATTTCACAATChy

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.7333 0.796 0.583 ..ATTTCACAATC.. rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6586 (15.30%)
Max nb of predicted sites per peak: 6
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.04

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

gvAGATTGCACAACTsy

RSAGTTGTGCAATCTBC

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gvAGATTGCACAACTsy

CEBPA MA0102.3 D 11 0.6471 0.886 0.573 ....ATTGCACAACT.. aTTGCAyAAym

CEBPB MA0466.1 D 11 0.6471 0.875 0.566 ...GATTGCACAAC... kATTGCAymAy

Cebpa MA0102.1 R 12 0.7059 0.811 0.572 .mAGATTGCACAA.... VRBRTTGCRMAA

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gvAGATTGCACAACTsy

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.6471 0.869 0.563 ....ATTGCACAACT.. rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4017 (9.33%)
Max nb of predicted sites per peak: 3
(canFam2_chrX_103730010_103730445_+)
Mean nb of predicted sites per peak: 1.01

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

rsAGATTGCGAAATva

TBATTTCGCAATCTSY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsAGATTGCGAAATva

CEBPA MA0102.2 R 9 0.5625 0.914 0.514 ....ATTGCGAAA... RTTGCRMAA

Cebpa MA0102.1 R 12 0.7500 0.876 0.657 .rAGATTGCGAAA... VRBRTTGCRMAA

CEBPA MA0102.3 D 11 0.6875 0.763 0.524 ....ATTGCGAAATr. aTTGCAyAAym

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsAGATTGCGAAATva

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.6875 0.763 0.525 ....ATTGCGAAATr. rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4000 (9.29%)
Max nb of predicted sites per peak: 3
(canFam2_chr24_45027355_45027787_+)
Mean nb of predicted sites per peak: 1.05

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

kcCTCTTGCACAACTsy

RSAGTTGTGCAAGAGGM

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kcCTCTTGCACAACTsy

CEBPA MA0102.3 D 11 0.6471 0.811 0.525 ....CTTGCACAACT.. aTTGCAyAAym

CEBPB MA0466.1 D 11 0.6471 0.791 0.512 ...TCTTGCACAAC... kATTGCAymAy

CEBPA MA0102.2 D 9 0.5294 0.774 0.410 .....TTGCACAAC... TtkygCAAy

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kcCTCTTGCACAACTsy

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.6471 0.834 0.540 ....CTTGCACAACT.. rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2618 (6.08%)
Max nb of predicted sites per peak: 3
(canFam2_chr1_35972194_35972660_+)
Mean nb of predicted sites per peak: 1.02

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

amACATTGCACAACTsy

RSAGTTGTGCAATGTKT

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor amACATTGCACAACTsy

CEBPA MA0102.3 D 11 0.6471 0.883 0.571 ....ATTGCACAACT.. aTTGCAyAAym

CEBPB MA0466.1 D 11 0.6471 0.855 0.553 ...CATTGCACAAC... kATTGCAymAy

CEBPA MA0102.2 R 9 0.5294 0.829 0.439 ....ATTGCACAA.... RTTGCRMAA

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor amACATTGCACAACTsy

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.6471 0.863 0.558 ....ATTGCACAACT.. rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3144 (7.31%)
Max nb of predicted sites per peak: 2
(canFam2_chrX_74592352_74592783_+)
Mean nb of predicted sites per peak: 1.01

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 oligos_8nt_mkv6_m1

atGGTTGCACAAtmy

RKATTGTGCAACCAT

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atGGTTGCACAAtmy

CEBPA MA0102.3 D 11 0.7333 0.905 0.664 ...GTTGCACAATa. aTTGCAyAAym

CEBPB MA0466.1 D 11 0.7333 0.857 0.629 ..GGTTGCACAAT.. kATTGCAymAy

Sox17 MA0078.1 R 8 0.5000 0.854 0.427 .......CACAATah SACAATRD.

Total maches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atGGTTGCACAAtmy

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.7333 0.919 0.674 ...GTTGCACAATa. rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7012 (16.29%)
Max nb of predicted sites per peak: 6
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.03

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 22 oligos_8nt_mkv6_m2

rkaTTGTGAAATmh

DKATTTCACAATMY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkaTTGTGAAATmh

CEBPA MA0102.3 R 11 0.7857 0.879 0.691 .kATTGTGAAAT.. KRTTRTGCAAT

Sox17 MA0078.1 D 8 0.5333 0.852 0.454 wkATTGTG...... .hyATTGTs

CEBPB MA0466.1 R 11 0.7857 0.860 0.676 ..ATTGTGAAATa. RTKRTGCAATM

Total maches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkaTTGTGAAATmh

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 R 11 0.7857 0.820 0.644 .kATTGTGAAAT.. KRTKGTGCAAY

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9081 (21.10%)
Max nb of predicted sites per peak: 6
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.05

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 23 oligos_8nt_mkv6_m3

rtATTGaGCAATam

KTATTGCTCAATAY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rtATTGaGCAATam

CEBPA MA0102.3 R 11 0.7857 0.877 0.689 .tATTGAGCAAT.. KRTTRTGCAAT

CEBPB MA0466.1 R 11 0.7857 0.872 0.685 ..ATTGAGCAATa. RTKRTGCAATM

Cebpa MA0102.1 D 11 0.7333 0.829 0.608 ...TTGAGCAATaw TtkygCAAyvy.

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rtATTGaGCAATam

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 R 11 0.7857 0.881 0.692 .tATTGAGCAAT.. KRTKGTGCAAY

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8839 (20.54%)
Max nb of predicted sites per peak: 6
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.12

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 24 oligos_8nt_mkv6_m4

drTTACACAAtmy

RKATTGTGTAAYH

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor drTTACACAAtmy

HLF MA0043.1 D 12 0.9231 0.856 0.791 wrTTACACAATa. krTTACryAAth

CEBPA MA0102.3 D 11 0.8462 0.810 0.686 .rTTACACAATa. aTTGCAyAAym

Cebpa MA0102.1 D 11 0.7857 0.807 0.634 ..TTACACAATah TtkygCAAyvy.

Total maches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor drTTACACAAtmy

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.8462 0.800 0.677 .rTTACACAATa. rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4060 (9.43%)
Max nb of predicted sites per peak: 3
(canFam2_chr9_62979957_62980307_+)
Mean nb of predicted sites per peak: 1.05

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 25 oligos_8nt_mkv6_m5

yvTTGCCCAAbr

YVTTGGGCAABR

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yvTTGCCCAAbr

CEBPA MA0102.3 D 11 0.9167 0.797 0.731 .aTTGCCCAAya aTTGCAyAAym

CEBPB MA0466.1 D 11 0.9167 0.762 0.698 waTTGCCCAAy. kATTGCAymAy

CEBPA MA0102.2 R 9 0.7500 0.783 0.588 .aTTGCCCAA.. RTTGCRMAA

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yvTTGCCCAAbr

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.9167 0.848 0.777 .aTTGCCCAAya rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2505 (5.82%)
Max nb of predicted sites per peak: 3
(canFam2_chr7_82962719_82963176_+)
Mean nb of predicted sites per peak: 1.28

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 26 positions_8nt_m1

rvAGATTGCAAAAChv

BDGTTTTGCAATCTBY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvAGATTGCAAAAChv

CEBPA MA0102.3 D 11 0.6875 0.888 0.610 ....ATTGCAAAACw. aTTGCAyAAym

CEBPA MA0102.2 R 9 0.5625 0.861 0.484 ....ATTGCAAAA... RTTGCRMAA

Cebpa MA0102.1 R 12 0.7500 0.833 0.625 .mAGATTGCAAAA... VRBRTTGCRMAA

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvAGATTGCAAAAChv

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.6875 0.862 0.593 ....ATTGCAAAACw. rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4325 (10.05%)
Max nb of predicted sites per peak: 3
(canFam2_chr19_6671590_6671842_+)
Mean nb of predicted sites per peak: 1.03

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 27 positions_8nt_m2

vgTGATTGTGCAAGas

STCTTGCACAATCACB

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vgTGATTGTGCAAGas

CEBPB MA0466.1 R 11 0.6875 0.871 0.599 ....ATTGTGCAAga. RTKRTGCAATM

CEBPA MA0102.3 R 11 0.6875 0.862 0.593 ...GATTGTGCAAg.. KRTTRTGCAAT

Cebpa MA0102.1 D 11 0.6471 0.780 0.505 .....TTGTGCAAgad TtkygCAAyvy.

Total maches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vgTGATTGTGCAAGas

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 R 11 0.6875 0.872 0.599 ...GATTGTGCAAg.. KRTKGTGCAAY

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4336 (10.07%)
Max nb of predicted sites per peak: 6
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.02

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 28 positions_8nt_m3

rkaTTGCCCAAtmy

RKATTGGGCAATMY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkaTTGCCCAAtmy

CEBPA MA0102.3 D 11 0.7857 0.844 0.663 ..ATTGCCCAATa. aTTGCAyAAym

CEBPB MA0466.1 D 11 0.7857 0.829 0.651 .tATTGCCCAAT.. kATTGCAymAy

CEBPA MA0102.2 R 9 0.6429 0.826 0.531 ..ATTGCCCAA... RTTGCRMAA

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkaTTGCCCAAtmy

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.7857 0.866 0.680 ..ATTGCCCAATa. rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4912 (11.41%)
Max nb of predicted sites per peak: 6
(canFam2_chr24_40613269_40613858_+)
Mean nb of predicted sites per peak: 1.17

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 29 positions_8nt_m4

gaTGGTTGCACAAyAst

ASTRTTGTGCAACCATC

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gaTGGTTGCACAAyAst

CEBPA MA0102.3 D 11 0.6471 0.872 0.564 ....GTTGCACAAyA.. aTTGCAyAAym

CEBPB MA0466.1 D 11 0.6471 0.825 0.534 ...GGTTGCACAAy... kATTGCAymAy

Cebpa MA0102.1 D 12 0.7059 0.771 0.544 .....TTGCACAAyAwt TtkygCAAyvyb

Total maches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gaTGGTTGCACAAyAst

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.6471 0.889 0.576 ....GTTGCACAAyA.. rTTGCacMAym

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2822 (6.56%)
Max nb of predicted sites per peak: 3
(canFam2_chr17_61878241_61878691_+)
Mean nb of predicted sites per peak: 1.01

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 30 positions_8nt_m5

rkATGTTGCAATCATbc

GVATGATTGCAACATMY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkATGTTGCAATCATbc

CEBPA MA0102.3 R 11 0.6471 0.798 0.516 .wATGTTGCAAT..... KRTTRTGCAAT

CEBPB MA0466.1 R 11 0.6471 0.814 0.526 ..ATGTTGCAATC.... RTKRTGCAATM

CEBPA MA0102.2 D 9 0.5294 0.761 0.403 ...TGTTGCAAT..... TtkygCAAy

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkATGTTGCAATCATbc

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 R 11 0.6471 0.782 0.506 .wATGTTGCAAT..... KRTKGTGCAAY

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2252 (5.23%)
Max nb of predicted sites per peak: 3
(canFam2_chr5_75421920_75422121_+)
Mean nb of predicted sites per peak: 1.02

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 31 dyads_m1

wwTATtkyrmaATAww

WWTATTKYRMAATAWW

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwTATtkyrmaATAww

FOXL1 MA0033.1 D 8 0.5000 0.924 0.462 ......dhdhaATA.. wwdayATA

CEBPA MA0102.2 D 9 0.5625 0.750 0.422 ....TtdhdhaAT... TtkygCAAy

Total maches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwTATtkyrmaATAww

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3760 (8.74%)
Max nb of predicted sites per peak: 16
(canFam2_chr31_26212884_26213215_+)
Mean nb of predicted sites per peak: 2.24

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 32 dyads_m2

trAaTAAATAAATAAAw

WTTTATTTATTTATTYA

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor trAaTAAATAAATAAAw

FOXI1 MA0042.1 R 12 0.7059 0.783 0.553 .....AAATAAATAAAw AWAYAAAYAHSM

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor trAaTAAATAAATAAAw

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1551 (3.60%)
Max nb of predicted sites per peak: 9
(canFam2_chr10_58563941_58564521_+)
Mean nb of predicted sites per peak: 1.59

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 33 dyads_m3

tdTTGCAAha

TDTTGCAAHA

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tdTTGCAAha

Ddit3::Cebpa MA0019.1 D 10 0.8333 0.778 0.648 wdTTGCAAhw rrrTGCAATm..

BRCA1 MA0133.1 D 6 0.5455 0.779 0.425 ....GCAAhw mCAAcm.

CEBPA MA0102.3 D 9 0.7500 0.756 0.567 .dTTGCAAhw aTTGCAyAA..

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tdTTGCAAha

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 9 0.7500 0.763 0.572 .dTTGCAAhw rTTGCacMA..

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3879 (9.01%)
Max nb of predicted sites per peak: 6
(canFam2_chrX_28082420_28082644_+)
Mean nb of predicted sites per peak: 2.09

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 34 dyads_m4

mayAAATAAATAAAwa

TWTTTATTTATTTRTK

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mayAAATAAATAAAwa

FOXI1 MA0042.1 R 12 0.7500 0.772 0.579 ...AAATAAATAAAw. AWAYAAAYAHSM

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mayAAATAAATAAAwa

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2441 (5.67%)
Max nb of predicted sites per peak: 10
(canFam2_chr10_58563941_58564521_+)
Mean nb of predicted sites per peak: 1.52

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 35 dyads_m5

tyCATTTCTbt

AVAGAAATGRA

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tyCATTTCTbt

Total maches= 0

No match

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tyCATTTCTbt

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3727 (8.66%)
Max nb of predicted sites per peak: 4
(canFam2_chr17_59641344_59641740_+)
Mean nb of predicted sites per peak: 1.06

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus jaspar_core_vertebrates database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]
Motifs versus Schmidt_CEBPa_motif database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSA-tools - peak-motifs result

Analysis: CEBPa_ChIP-seq_in_dog_liver_test_parameters (03/09/2014 19:25)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor waCAAAACaa

Sox5 MA0087.1 R 6 0.5455 0.766 0.418 ....AAACww WAACAA.

Total maches= 1

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor waCAAAACaa

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCTGCAGss

Total maches= 0

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCTGCAGss

Total maches= 0

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ttTTCTTTTCTty

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TtTTTTyTTTTTTwAArwAAATms

Total maches= 0

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TtTTTTyTTTTTTwAArwAAATms

Total maches= 0

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyATTTTTAAaw

Total maches= 0

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krTTACACAAym

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.9167 0.795 0.729 .rTTACACAAya rTTGCacMAym

Total maches= 1

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aaACAAAAACaa

SRY MA0084.1 D 7 0.5000 0.847 0.424 aaACAAA..... ..waACAAw

Total maches= 1

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aaACAAAAACaa

Total maches= 0

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krTTGCTCAAym

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.9167 0.847 0.776 .rTTGCTCAAya rTTGCacMAym

Total maches= 1

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yvTTGCCCAAbr

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.9167 0.848 0.777 .aTTGCCCAAya rTTGCacMAym

Total maches= 1

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwTATtkyrmaATAww

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor trAaTAAATAAATAAAw

FOXI1 MA0042.1 R 12 0.7059 0.783 0.553 .....AAATAAATAAAw AWAYAAAYAHSM

Total maches= 1

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor trAaTAAATAAATAAAw

Total maches= 0

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tdTTGCAAha

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 9 0.7500 0.763 0.572 .dTTGCAAhw rTTGCacMA..

Total maches= 1

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mayAAATAAATAAAwa

FOXI1 MA0042.1 R 12 0.7500 0.772 0.579 ...AAATAAATAAAw. AWAYAAAYAHSM

Total maches= 1

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mayAAATAAATAAAwa

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tyCATTTCTbt

Total maches= 0

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tyCATTTCTbt

Total maches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSA-tools - peak-motifs result

Analysis: CEBPa_ChIP-seq_in_dog_liver_test_parameters (03/09/2014 19:25)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor waCAAAACaa Sox5 MA0087.1 R 6 0.5455 0.766 0.418 ....AAACww WAACAA. Total maches= 1

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor waCAAAACaa Total maches= 0

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssCTGCAGss Total maches= 0

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssCTGCAGss Total maches= 0

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ttTTCTTTTCTty Total maches= 0

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor vmAGTTGCAAAay do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 10 0.7143 0.782 0.558 ...GTTGCAAAay rTTGCacMAy. Total maches= 1

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor TtTTTTyTTTTTTwAArwAAATms Total maches= 0

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor TtTTTTyTTTTTTwAArwAAATms Total maches= 0

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor yyATTTTTAAaw ARID3A MA0151.1 R 6 0.5000 0.821 0.410 .....TTTAAa. TTTRAT MEF2C MA0497.1 R 12 0.8000 0.752 0.601 wwATTTTTAAaw ..CTATTTTTRGMH. Total maches= 2

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor yyATTTTTAAaw Total maches= 0

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor krTTACACAAym do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.9167 0.795 0.729 .rTTACACAAya rTTGCacMAym Total maches= 1

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor aaACAAAAACaa SRY MA0084.1 D 7 0.5000 0.847 0.424 aaACAAA..... ..waACAAw Total maches= 1

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor aaACAAAAACaa Total maches= 0

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor krTTGCTCAAym do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.9167 0.847 0.776 .rTTGCTCAAya rTTGCacMAym Total maches= 1

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor drTTACACAAtmy do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.8462 0.800 0.677 .rTTACACAATa. rTTGCacMAym Total maches= 1

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor yvTTGCCCAAbr do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 11 0.9167 0.848 0.777 .aTTGCCCAAya rTTGCacMAym Total maches= 1

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwTATtkyrmaATAww Total maches= 0

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor trAaTAAATAAATAAAw FOXI1 MA0042.1 R 12 0.7059 0.783 0.553 .....AAATAAATAAAw AWAYAAAYAHSM Total maches= 1

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor trAaTAAATAAATAAAw Total maches= 0

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor tdTTGCAAha do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 9 0.7500 0.763 0.572 .dTTGCAAhw rTTGCacMA.. Total maches= 1

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor mayAAATAAATAAAwa FOXI1 MA0042.1 R 12 0.7500 0.772 0.579 ...AAATAAATAAAw. AWAYAAAYAHSM Total maches= 1

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor mayAAATAAATAAAwa Total maches= 0

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor tyCATTTCTbt Total maches= 0

Schmidt_CEBPa_motif name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor tyCATTTCTbt Total maches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor waCAAAACaa

Sox5 MA0087.1 R 6 0.5455 0.766 0.418 ....AAACww WAACAA.

Total maches= 1

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor waCAAAACaa

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCTGCAGss

Total maches= 0

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCTGCAGss

Total maches= 0

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ttTTCTTTTCTty

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TtTTTTyTTTTTTwAArwAAATms

Total maches= 0

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TtTTTTyTTTTTTwAArwAAATms

Total maches= 0

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyATTTTTAAaw

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aaACAAAAACaa

SRY MA0084.1 D 7 0.5000 0.847 0.424 aaACAAA..... ..waACAAw

Total maches= 1

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aaACAAAAACaa

Total maches= 0

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwTATtkyrmaATAww

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor trAaTAAATAAATAAAw

FOXI1 MA0042.1 R 12 0.7059 0.783 0.553 .....AAATAAATAAAw AWAYAAAYAHSM

Total maches= 1

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor trAaTAAATAAATAAAw

Total maches= 0

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tdTTGCAAha

do560+do843_mmus_cebpa_liver_meme_top_m1 do560+do843_mmus_cebpa_liver_meme_top_m1 D 9 0.7500 0.763 0.572 .dTTGCAAhw rTTGCacMA..

Total maches= 1

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mayAAATAAATAAAwa

FOXI1 MA0042.1 R 12 0.7500 0.772 0.579 ...AAATAAATAAAw. AWAYAAAYAHSM

Total maches= 1

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mayAAATAAATAAAwa

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tyCATTTCTbt

Total maches= 0

Schmidt_CEBPa_motif

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tyCATTTCTbt

Total maches= 0